SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1174

Length: 941 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1174

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pco077147; LOC100282679; K03686 molecular chaperone DnaJ	-	-	9.0e-35	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Blast2go	chaperone protein	-	-	0.0	67%

Source	GOs	Term	Type	Identity
Blast2go	embryo sac cellularization	GO:0009558	Biological Process	67%
Blast2go	chaperone mediated protein folding requiring cofactor	GO:0051085	Biological Process	67%
Blast2go	polar nucleus fusion	GO:0010197	Biological Process	67%
Blast2go	nuclear membrane fusion	GO:0000740	Biological Process	67%
Blast2go	synergid death	GO:0010198	Biological Process	67%
Blast2go	mitochondrion	GO:0005739	Cellular Component	67%

Source	InterPros	Term	Type	Identity
Blast2go	Heat shock protein DnaJ, N-terminal	IPR001623	-	67%
Blast2go	Heat shock protein DnaJ	IPR003095	-	67%
Blast2go	Heat shock protein DnaJ, conserved site	IPR018253	-	67%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVQ6

Fln msg: Distance to subject end: 208 aas, your sequence is shorter than subject: 294 - 463

Fln protein: MHRAGAVASSRCCREGIIIYCCRHGKINSCRVSGLVQMARSSFIRHVLRFTRGARNNSVGRRSRAETPELKSSFQANLHVPAFGICSFAGQFKDSFFQHSISGYGRADLCSKIFGFGSVKRRFHATGTLGMAARDLYDILGISKDAGQGEIKKAYYALAKKHHPDVNKADPDAEKKFQEIQHAYEVLKDDEKRSLYDQMGPEAFEQASAGGAPGGQGGPGFGGFGGFGGFDFGDIFGGGLNEALKNMFHQKSFGGQDIKITMELSFMEAVQGCSKNLSYDADVRCSACDGTGMP

Protein Length: 295

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGAAAATCATACTTAAGTAAATATAAAAGTAGCAA_-_ATGCATAGAGCAGGGGCAGTGGCAAGTAGCAGGTGCTGCCGAGAAGGTATCATCATCTATTGCTGCAGGCACGGGAAAATAAACAGCTGCAGAGTGTCGGGGCTCGTTCAAATGGCACGTTCAAGTTTCATTAGGCATGTCTTGCGTTTTACAAGAGGAGCACGTAACAATTCTGTCGGACGCCGAAGCAGGGCCGAAACACCAGAACTGAAGTCTTCATTCCAAGCAAATCTACACGTTCCTGCGTTTGGAATCTGTTCCTTTGCTGGGCAGTTTAAAGACTCCTTTTTCCAGCACTCTATCTCAGGTTATGGAAGGGCTGATCTGTGTAGCAAAATATTTGGATTTGGATCAGTTAAGAGGAGATTTCATGCCACAGGCACCCTGGGCATGGCTGCAAGAGACCTGTATGATATTCTTGGAATAAGTAAGGATGCAGGTCAAGGAGAAATCAAGAAGGCCTACTATGCACTTGCTAAGAAGCATCATCCCGATGTAAATAAAGCGGATCCAGATGCAGAGAAAAAATTTCAGGAAATTCAACATGCTTATGAGGTATTGAAAGATGATGAAAAACGATCACTATATGACCAGATGGGTCCTGAGGCCTTTGAACAGGCATCAGCAGGTGGTGCACCAGGTGGTCAGGGAGGTCCAGGATTTGGTGGGTTTGGCGGATTTGGTGGATTTGACTTTGGTGATATTTTTGGAGGTGGTCTAAATGAGGCCTTGAAGAACATGTTTCATCAAAAGTCCTTTGGAGGCCAGGATATCAAGATAACAATGGAATTGTCTTTCATGGAAGCAGTTCAAGGATGCAGTAAGAACCTTTCTTATGACGCTGATGTGCGTTGTTCAGCATGCGATGGGACTGGAATGCCTG

Fln Alignment:

sp_v1.1_unigene1174___MARSSFIRHVLRFTRGARNNSVGRRSRAETPELKSSFQANLHVPAFGICSFAGQFKDSFFQHSISGYGRADLCSKIFGFGSVKRRFHATGTLGMAARDLYDILGISKDAGQGEIXXXXXXXXXXHHPDVNKADPDAEKKFQEIQHAYEVLKDDEKRSLYDQMGPEAFEQASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNEALKNMFHQKSFGGQDIKITMELSFMEAVQGCSKNLSYDADVRCSACDGTGMP
A9NVQ6______________MARSSGIKHILRVARGSRNNSVGRRSRAETPEPKASVQANLYVPAFGICSFAGQFKDSLFQHPISGYGRVDLCNKIFRFESAKRRFHATGTLGMAARDLYDILGISKDAGQGEIKKAYYALAKKHHPDVNKGDPDAEKKFQEIQRAYEVLKDDEKRSLYDRVGPEGFAQAE--AGGGAGGPGSGDFGFGYGGFGFEDMFGGGMNEALRNMFNQGSFGGGDVKMTLELSFMEAVQGCTKNLSFQTSVTCTSCNGSGVP

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
93	33		66		0.997452
98	33	66			0.997452
128		85		14	0.993533
129	85			14	0.993533
132			85	14	0.993533
136	85	14			0.993533
137	85	14			0.993533
139	85			14	0.993533
140	85		14		0.993533
141	85		14		0.993533
143	85			14	0.993533
146		14		85	0.993533
147			85	14	0.993533
161		85		14	0.993533
222	14		85		0.993533
546	75		25		0.996473
560	75		25		0.996473
628		16		83	0.994512
641		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain