SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1170

Length: 2083 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene1170
GTTAAATTCTGGTTTCAGAATCGTCGAACACAATTGAAAGCTACTCAAGAGCGACATGAAAACTCGCTTTGAGGCAGAAATCGAACAGCTTCGATCAGAGAATGTGTCCCTCAGAGAATCACTAAGAAATCCAGTCTGTTCAATCTGTGGAGGACGAGGACTTAATGGGGATCTCATGTCATTCGATGAACAGCAGCTACGGCATGAGAATGCTCGCCTGAAAGATGAGCTGGACAGGGTTTGTGCTTTGGTGGAGAAGTTGTCCGGTCGACCAAATTCATCCATAGCACCTGCCTCCAATTCTTCGCTGGACCTCACAGTGGGCTTAAGTGGACTGCATTCGCCTGCCATGAATAGTGTTAACCAGCGTGCCATGGTGCTGATGGGTATAGAAAGATCTAAAGTTACAGAACTAGCATTAGCTGCCATGGATGAGCTGATGAAAATGAGTCAAACTGAGGAACCTCTGTGGGTGAAAAACCCCGAAGCAGGCATGGAAACTTTGGACCATGAAGAATACTCACGAGAATTTCCAAGGCTTATTGGACCAAAACCGATCGGTCACAAGACTGAAGCTACCAGGCATACAGACATAGTGGTCATGAAGAGCTCCACAATAGTTGACACACTTATCAATGCTAACCGGTGGATGGAAACATTCCCATGCATAATATCAAGGGCTACTACGGTGGATGTGATTTCCAACGGTGTGGGTGGCACTAGGAATGGAGCGCTACAATTGATGTATGCCGAGTTACAAGTTCTATCACCTCTTCTTCCAACNCGNGAGNTTTNTTTCGTCAGATTTAGCAAGCAGCATGCTGATGGCCTGTGGGGAGTAGTGGATGTATCTGTTGACAGCTTATTGGACAATCCAGATCCATCTTTAACTAAATGCAGGAAACGCCCATCTGGTTGTCTGTTGCGAGATATGCCTAATAACCGCTCCAAGGTGACATGGGTGGAGCATTTGGAGTATGATAATGTTGGAGTGCACAGGATTTTTCGTTCTATAATAAGCAGTGGAATGGCATTTGGAGCTCAACGTTGGGTTGCAACTCTGCAGCGCCAATGTCAAAGGATTGCCTTTCTCATGTCAACAAACGGTCCTACGGGAGATCTTGCAGCTGTTCCAACACCCAGCGGACGCCGAAGCCTTATGAAACTTGCAGAACGTATGACAAATAAGTTTTGTAGTGGAGTGAGTGCATCGAGTAGGCATACATGGACTAAGCTATCTCAGGGAACTGGCGACGATGATGTCCGGGTGATGTCAAGAAAGAACGTGGACGATCCTGGAGAGCCTCCCGGAGTAGTTCTGAGTGCAGCAACATCTCTCTGGCTTCCAGTTTCTCCAACCCGCTTATTTGACTTCTTAAGAGACCAGAGTTTTAGAAACGAGTGGGATATACTGTCCAATGGAGGCCCAATAGAAGAAGTAACTCACATATCAAACGGAAAGGATCGTGGCAACAGGGTTTCTGTTCTTAGCGCCAAAAACTCTAGTCAGAGCAACACGTTGATCTTGCAAGAGAGCTGTGCAGACACGTACGGATCGATGGTGGTTTATGCTCCAGTGGAAATCTCAGCAATTCATCAAGTTATGAACGGCAATGACTCAATTAATGTCGCTCTCCTTCCTTCGGGTTTTGTCATTCTTCCAGAGGGACCACCTGAGAGCCGATCAGTAATTGACAATCGACAGGTCGAAGGATCGATCCTGACCATTGCATTTCAGATACTTGTTAACGATCTCCCATCGGCAAAGCTGACGCTGGAGTCTGTTGAGACTGTCAACAATCTCATTTCATGCACTGCACAGAGAATCAAAGCTGCTCTACAGAAAGTCGAGGATGTTTGATGTTCAGAGATCGGTCGCAAGCTAACTTAAATATCTCTTCAATTATTTTTTTACCAAAACAATAAATATTATTTATCAGTGTTGATCAACACCACCATTTTATTCTCGAGTTTTGGGATTGTATATTATCAGTTTGAAAGCGTGAGTGCAATTTGATAACCGACTATAGGGATGAAAGGAAAACTGCATCGAAATCCACACGAAGCAATGAAACCTGCACCA

Ace file of the UniGene sp_v1.1_unigene1170

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	TPA_inf: class IV HD-Zip protein HDZ41 [Physcomitrella patens]	-	-	56%
FL-Next	tr=Homeodomain protein HB2; Picea abies (Norway spruce) (Picea excelsa).	-	-	60%
Blast2go	tpa_inf: class iv hd-zip protein hdz41	-	-	72%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q8S555

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 620 - 708

Fln protein: LNSGFRIVEHN*KLLKSDMKTRFEAEIEQLRSENVSLRESLRNPVCSICGGRGLNGDLMSFDEQQLRHENARLKDELDRVCALVEKLSGRPNSSIAPASNSSLDLTVGLSGLHSPAMNSVNQRAMVLMGIERSKVTELALAAMDELMKMSQTEEPLWVKNPEAGMETLDHEEYSREFPRLIGPKPIGHKTEATRHTDIVVMKSSTIVDTLINANRWMETFPCIISRATTVDVISNGVGGTRNGALQLMYAELQVLSPLLPTREFCFVRFSKQHADGLWGVVDVSVDSLLDNPDPSLTKCRKRPSGCLLRDMPNNRSKVTWVEHLEYDNVGVHRIFRSIISSGMAFGAQRWVATLQRQCQRIAFLMSTNGPTGDLAAVPTPSGRRSLMKLAERMTNKFCSGVSASSRHTWTKLSQGTGDDDVRVMSRKNVDDPGEPPGVVLSAATSLWLPVSPTRLFDFLRDQSFRNEWDILSNGGPIEEVTHISNGKDRGNRVSVLSAKNSSQSNTLILQESCADTYGSMVVYAPVEISAIHQVMNGNDSINVALLPSGFVILPEGPPESRSVIDNRQVEGSILTIAFQILVNDLPSAKLTLESVETVNNLISCTAQRIKAALQKVEDV*

Protein Length: 621

Fln nts: GTTAAATTCTGGTTTCAGAATCGTCGAACACAATTGAAAGCTACTCAAGAGCGACATGAAAACTCGCTTTGAGGCAGAAATCGAACAGCTTCGATCAGAGAATGTGTCCCTCAGAGAATCACTAAGAAATCCAGTCTGTTCAATCTGTGGAGGACGAGGACTTAATGGGGATCTCATGTCATTCGATGAACAGCAGCTACGGCATGAGAATGCTCGCCTGAAAGATGAGCTGGACAGGGTTTGTGCTTTGGTGGAGAAGTTGTCCGGTCGACCAAATTCATCCATAGCACCTGCCTCCAATTCTTCGCTGGACCTCACAGTGGGCTTAAGTGGACTGCATTCGCCTGCCATGAATAGTGTTAACCAGCGTGCCATGGTGCTGATGGGTATAGAAAGATCTAAAGTTACAGAACTAGCATTAGCTGCCATGGATGAGCTGATGAAAATGAGTCAAACTGAGGAACCTCTGTGGGTGAAAAACCCCGAAGCAGGCATGGAAACTTTGGACCATGAAGAATACTCACGAGAATTTCCAAGGCTTATTGGACCAAAACCGATCGGTCACAAGACTGAAGCTACCAGGCATACAGACATAGTGGTCATGAAGAGCTCCACAATAGTTGACACACTTATCAATGCTAACCGGTGGATGGAAACATTCCCATGCATAATATCAAGGGCTACTACGGTGGATGTGATTTCCAACGGTGTGGGTGGCACTAGGAATGGAGCGCTACAATTGATGTATGCCGAGTTACAAGTTCTATCACCTCTTCTTCCAACaCGcGAGtTTTgTTTCGTCAGATTTAGCAAGCAGCATGCTGATGGCCTGTGGGGAGTAGTGGATGTATCTGTTGACAGCTTATTGGACAATCCAGATCCATCTTTAACTAAATGCAGGAAACGCCCATCTGGTTGTCTGTTGCGAGATATGCCTAATAACCGCTCCAAGGTGACATGGGTGGAGCATTTGGAGTATGATAATGTTGGAGTGCACAGGATTTTTCGTTCTATAATAAGCAGTGGAATGGCATTTGGAGCTCAACGTTGGGTTGCAACTCTGCAGCGCCAATGTCAAAGGATTGCCTTTCTCATGTCAACAAACGGTCCTACGGGAGATCTTGCAGCTGTTCCAACACCCAGCGGACGCCGAAGCCTTATGAAACTTGCAGAACGTATGACAAATAAGTTTTGTAGTGGAGTGAGTGCATCGAGTAGGCATACATGGACTAAGCTATCTCAGGGAACTGGCGACGATGATGTCCGGGTGATGTCAAGAAAGAACGTGGACGATCCTGGAGAGCCTCCCGGAGTAGTTCTGAGTGCAGCAACATCTCTCTGGCTTCCAGTTTCTCCAACCCGCTTATTTGACTTCTTAAGAGACCAGAGTTTTAGAAACGAGTGGGATATACTGTCCAATGGAGGCCCAATAGAAGAAGTAACTCACATATCAAACGGAAAGGATCGTGGCAACAGGGTTTCTGTTCTTAGCGCCAAAAACTCTAGTCAGAGCAACACGTTGATCTTGCAAGAGAGCTGTGCAGACACGTACGGATCGATGGTGGTTTATGCTCCAGTGGAAATCTCAGCAATTCATCAAGTTATGAACGGCAATGACTCAATTAATGTCGCTCTCCTTCCTTCGGGTTTTGTCATTCTTCCAGAGGGACCACCTGAGAGCCGATCAGTAATTGACAATCGACAGGTCGAAGGATCGATCCTGACCATTGCATTTCAGATACTTGTTAACGATCTCCCATCGGCAAAGCTGACGCTGGAGTCTGTTGAGACTGTCAACAATCTCATTTCATGCACTGCACAGAGAATCAAAGCTGCTCTACAGAAAGTCGAGGATGTTTGA___TGTTCAGAGATCGGTCGCAAGCTAACTTAAATATCTCTTCAATTATTTTTTTACCAAAACAATAAATATTATTTATCAGTGTTGATCAACACCACCATTTTATTCTCGAGTTTTGGGATTGTATATTATCAGTTTGAAAGCGTGAGTGCAATTTGATAACCGACTATAGGGATGAAAGGAAAACTGCATCGAAATCCACACGAAGCAATGAAACCTGCACCA

Fln Alignment:

sp_v1.1_unigene1170___KSDMKTRFEA--------EIEQLRSENVSLRESLRNPVCSICGGRGLNGDLMSFDEQQLRHENARLKDELDRVCALVEKLSGRXXXXXXXXXXXX---LDLTVG------LSG----LHSPAMNSVNQRAMVLMGIERSKVTELALAAMDELMKMSQTEEPLWVKNPEAGMETLDHEEYSREFPRLIGPKPIGHKTEATRHTDIVVMKSSTIVDTLINANRWMETFPCIISRATTVDVISNGVGGTRNGALQLMYAELQVLSPLLPTREFCFVRFSKQHAXXXXXXXXXXXXXXXXNPDPSLTKCRKRPSGCLLRDMPNNRSKVTWVEHLEYDNVGVHRIFRSIISSGMAFGAQRWVATLQRQCQRIAFLMSTNGPTG-DLAAVPTPSGRRSLMKLAERMTNKFCSGVSASSRHTWTKLSQGTGDDDVRVMSRKNVDDPGEPPGVVLSAATSLWLPVSPTRLFDFLRDQSFRNEWDILSNGGPIEEVTHISNGKDRGNRVSVL--SAKNSSQSNT-LILQESCADTYGSMVVYAPVEISAIHQVMNGNDSINVALLPSGFVILPEGP--------PESRSV-IDNRQVEGSILTIAFQILVNDLPSAKLTLESVETVNNLISCTAQRIKAAL
Q8S555______________RTQMKTQLERHENSILRQENEKLRSENLSIRDAMRNPICTNCGGPAVLGE-MSFEEQQLRIENARLKKELDRLCALAGKFFGRPVPSMPSVPLMPKSSLDLGVGGMPTSLPSGCADLMHGPA----GGRTGNIIGIERSMLAELALASMDELFKMAQADETLWIPNLDAGKETLNYEEYMRQFPSTITPKLIGLATEATRETGMVITNSLNLVETLMDVDRWKEMFPCMISRAAMVDVISSGMSGTRNGALQLMYAELQVLSPLVPAREVYFLRFCKQHAEGVWAVVDVSVDSLRDNSPAGFMKCRRLPSGCLIQDMPNGYSKVTWVEHAEYDDRGVHRLYRSLLNSGMAFGAQRWLATLQRQCECLAILMATANVTARDPTAIRTPNGRRSMLRLAQRMTDNFCAGVSASTVHTWNKLS-GNIDDDVRVMTRKSVDDPGEPPGVVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIPKGQDPGNCVSLLKASAMNSNQSSSMLILQKTCTNASGSLVVYAPVDIPAMHVVMSGGDPPYVALLPSGFAILPNGPKCRPLALNPSGNGVGVNSPRVGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAAL

SNPs (tot: 3)

Position	A %	C %	T %	Probability
538	66	33		0.997452
860	14		85	0.993533
1684		20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain