SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1153

Length: 1364 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1153

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	WD and tetratricopeptide repeat protein, putative; K11807 WD and tetratricopeptide repeats protein 1	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	38%
Blast2go	protein	-	-	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	66%

Source	InterPros	Term	Type	Identity
Blast2go	WD40 repeat	IPR001680	-	66%
Blast2go	WD40 repeat-like-containing domain	IPR011046	-	66%
Blast2go	Tetratricopeptide-like helical	IPR011990	-	66%
Blast2go	WD40/YVTN repeat-like-containing domain	IPR015943	-	66%
Blast2go	WD40-repeat-containing domain	IPR017986	-	66%
Blast2go	WD40 repeat, subgroup	IPR019781	-	66%
Blast2go	WD40 repeat 2	IPR019782	-	66%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8L3

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 42 aas, putative chimeric sequence, No stop codon before M and low homology subject, your sequence is longer than subject: 343 - 201

Fln protein: MAIRDCNEAHKINPMSGWAHVTMAESLSQLGKHKEALDYAMQANFLDPTNHQLAEKVQYLREKLAAAEDGKNSKKNDGESKLERRPQRVRSLSELLFRTEADQSDSSQDSRRAEREDSDYDDDMDVEMEFEMSVSGDDDREAEAGLRPGSLNLRVRRRGAASRDSSQRNSSSGSPPSGMQNEEISPQMEIAIDLRQRYVGHCNVGTDIKQASFLGTKGDFVASGSDDGRWFIWQKRTGRLMKVLKGDDNVVNCVQCHPFDCAVATSGIDNTIKMWTPCAQEPSIVFGGVAGPETADIFNLMAENQRKMRSQREISLPFELLQRFRMHDVGEGTVHPFECTQS*

Protein Length: 344

Fln nts: ATGGGGTGCAACAGCTTTTTTAAAGAGATCATGGAAAAATGATGCTCAT_-_ATGGCTATACGAGATTGCAATGAGGCTCATAAAATAAACCCTATGTCTGGGTGGGCCCATGTTACGATGGCGGAATCCCTTTCGCAGCTAGGAAAACACAAAGAGGCTTTAGACTATGCCATGCAAGCCAATTTTTTGGATCCAACAAACCATCAGCTAGCTGAAAAAGTGCAATATCTTCGGGAAAAACTTGCTGCAGCTGAAGATGGGAAAAATAGTAAGAAGAATGATGGGGAGTCTAAATTGGAAAGGCGGCCTCAAAGGGTGCGGTCATTGAGTGAGTTACTTTTCAGAACAGAGGCAGATCAGAGTGACTCATCACAGGATAGCCGAAGAGCTGAAAGAGAAGATTCAGATTATGATGATGATATGGATGTAGAAATGGAGTTTGAAATGTCCGTCTCTGGTGATGATGATAGAGAGGCAGAGGCAGGACTTCGACCTGGAAGTTTGAATTTGAGGGTTCGTAGAAGAGGTGCTGCAAGCAGGGACAGTAGCCAGAGAAACAGTTCTTCAGGATCTCCACCTTCTGGAATGCAAAATGAGGAGATTTCCCCTCAGATGGAGATAGCCATAGATTTGCGACAGCGATATGTAGGGCATTGCAATGTGGGGACAGACATTAAACAAGCCAGCTTTCTAGGCACAAAAGGGGATTTTGTTGCTAGTGGGAGTGATGATGGGCGGTGGTTTATTTGGCAAAAGAGAACAGGGAGGTTGATGAAGGTGCTAAAAGGAGATGACAATGTTGTTAACTGTGTGCAGTGCCACCCTTTTGACTGCGCTGTAGCAACAAGTGGTATAGACAATACAATCAAAATGTGGACTCCTTGTGCACAAGAGCCATCCATAGTTTTCGGTGGTGTAGCAGGCCCAGAGACTGCAGATATATTCAATTTGATGGCTGAAAATCAGCGTAAAATGCGCAGTCAACGCGAAATTAGCTTGCCATTCGAACTTCTGCAACGCTTTAGAATGCATGACGTTGGTGAAGGGACCGTACATCCCTTTGAATGCACACAAAGCTAACCTTTTTTTCAAGGCTCAAAGGATATTGTAATTTTTCTATCAGAAATGAATCGTTTATCTTGAGAACGAAGTAATTTCTAAAATTTATTGATTGCCTTTCCAGGCAAATGCAAATATCCTGTAACGTATTACCATCGTCACATTGTAGTCGATCTGTGTGCTTCATGTGGTTGTAATGGATTGAAGATCCAGGGACAAAATAAAGAAAAATCTATTGCGTACTGCCCTTGAGACGCGCTGATTGCATTCATGGCATAGCCTAACCAGAAAGATAGCAAATGAAATT

Fln Alignment:

sp_v1.1_unigene1153___SPQMEIAIDLRQRYVGHCNVGTDIKQASFLGTKGDFVASGSDDGRWFIWQKRTGRLMKVLKGDDNVVNCVQCHPFDCAVATSGIDNTIKMWTPCAQEPSIVFGGVAGPETADIFNLMAENQRKMRSQREIS
D5A8L3______________SSEMSEDLEAPQVYEGHRNAQT-VKGVNFFGANTEYVVSGSDCGRIFIWKKKGGQLVHLMKGDKEVVNCLEPHPYATILATSGIEKNIKVWSPTASH--------LIPLPDNVEELMEANKRKREQHARIS

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
849	33			66	1.0
851			33	66	1.0
927		75	25		0.996473
928		75		25	0.996473
929	75	25			0.996473
931	75			25	0.996473
935		25		75	0.996473
936			75	25	0.996473
937		75		25	0.996473
938	75		25		0.996473
940	75	25			0.996473
942	75		25		0.996473
945		25		75	0.996473
985	83		16		0.994512
986	83			16	0.994512
989		83		16	0.994512
992	83	16			0.994512
993	83	16			0.994512
996	83		16		0.994512
1002		83		16	0.994512
1005		16		83	0.994512
1008	16		83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain