SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1152

Length: 1031 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene1152 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cyclic nucleotide gated channel n=1 Tax=Malus x domestica RepID=A9CRE4_MALDO	-	-	61%
FL-Next	sp=Probable cyclic nucleotide-gated ion channel 20, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	61%
Blast2go	cyclic nucleotide-binding transporter 1	-	-	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to nematode	GO:0009624	Biological Process	0.0	73%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9LD37

Fln msg: Overlapping hits, possible frame ERROR between 266 and 262, your sequence is shorter than subject: 187 - 764

Fln protein: DLQREIRRRLCLDLVKKVRIFTVMDDQVLDAICERLRQRLYIGGSEILRIGYPIDKMIFIVRGKLESTGKDGSVDLSGGDICGEELxxxWCLEHTPLQNNSKRFRRTGIRAISSRTVRCAGSVEAFSLQAADLEEVTRLFSRLLRNPRVQGAIRYESPYWRTWAASCIQVAWKYRKKRQQRSATTE*

Protein Length: 188

Fln nts: AGGACTTACAAAGGGAAATTCGACGCCGTCTTTGTTTAGATCTTGTCAAAAAGGTGCGCATTTTTACTGTTATGGATGATCAAGTACTGGATGCTATTTGTGAACGGTTAAGGCAGCGCCTTTATATAGGTGGAAGTGAAATTCTAAGGATAGGCTATCCTATAGATAAAATGATCTTTATTGTGCGAGGAAAATTGGAAAGCACTGGCAAAGATGGCTCAGTTGATCTTTCTGGAGGTGACATATGTGGTGAAGAACTGxxxxxxxxxTGGTGCCTCGAGCACACTCCACTACAGAATAACAGCAAGAGGTTCAGACGAACTGGCATAAGAGCAATTTCTAGTAGAACAGTCCGTTGTGCCGGCAGTGTAGAAGCATTTTCTCTTCAGGCAGCTGACTTGGAAGAGGTCACGAGACTTTTCAGCCGCCTACTACGGAATCCACGAGTCCAAGGAGCTATAAGATACGAGTCACCTTACTGGAGGACGTGGGCAGCAAGTTGCATACAAGTAGCTTGGAAATACCGTAAGAAGAGGCAACAGAGAAGTGCTACAACTGAATGAAGAGTACTATCTGTGAGAGAGTCCTTCAGTCTAATGACTTGTCATTTGAGGCAGAGTCCATTCCAAGTGACAGTTCTGGGGTCCATCCTAACGCAAGCAGAAGAAAAGACGAAAATTCTGTGTATATTTTGTATCAGTTTTATTGGAAGAAGTATGTAGTGAAGTTGGGGTTCTCCTTCATAGTCTTATTGACTCTATGCTCTTTGGTTTTTTAAACTTGCTGTCTGGTTTCTCTGTGTAGCGAATATGATAACTTTTTCATTGTTAACAGATCTAAATCTTAGCAAGCTTATAGCAAAATTTTCCCTTTCTGTGATAGTAGATTACTTCGTGTAATGAATCAGTGGCTCTCTTTGCCTCTCTATCGTTTTGGTTTGCGCTTACGCTTTCGTGGAACGTAAGCAAATATGTAATAATACTCATTAAGGATAATTTTTCGTACTAAAAAAACAATGCAAGTAAACATTACC

Fln Alignment:

sp_v1.1_unigene1152___DLQREIRRRLCLDLVKKVRIFTVMDDQVLDAICERLRQRLYIGGSEILRIGYPIDKMIFIVRGKLESTGKDGSV-DLSGGDICGEELxxWCLEHTPLQNNSKRFRRTGIRAISSRTVRCAGSVEAFSLQAADLEEVTRLFSRLLRNPRVQGAIRYESPYWRTWAASCIQVAWKYRKKRQQRSATTE
Q9LD37______________DLQRDIRRHL-FKFLKKVRIFSLMDEPILDAIRERLKQRTYIGSSTVLHRGGLVEKMVFIVRGEMESIGEDGSVLPLYEGDVCGEELxxWCLERSSVNPDGTRIRMPSKGLLSSRNVRCVTNVEAFSLSVADLEDVTSLFSRFLRSHRVQGAIRYDSPYWRLRAARQIQVAWRYRRRRLHRLCTPQ

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
318		33		66	0.997452
391	33	66			0.997452
396	33		66		0.997452
476		25		75	0.996473
824			20	80	0.995493
828	80			20	0.995493
833	20			80	0.995493
834		20		80	0.995493
839	80	20			0.995493
841			20	80	0.995493
842		20		80	0.995493
843			20	80	0.995493
844	20	80			0.995493
858	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain