SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1142

Length: 1371 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1142

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	unknown [Picea sitchensis]	-	-	92%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LK98

Fln msg: your sequence is shorter than subject: 185 - 479

Fln protein: LNKESTSPKACSVAAAPEEGNLQQKSDGGRNSTTSSTSTSALTANAAHQLGSPAAEGISDTAQAKSMDVEVKTDLDISAYEANTNLAPPAESGSEDFVKNEPQDLQFHTWPASPEYNIWGDLDENWLNSVPALETDMTWDVLFHNPIDSYVEGVDSDHKLETQGQASPEHHSPPQQMYVWKDCK*

Protein Length: 186

Fln nts: TTTAAACAAGGAATCTACCAGCCCTAAAGCTTGTTCAGTTGCGGCAGCCCCTGAGGAAGGCAATTTGCAGCAAAAGTCTGATGGAGGAAGAAACTCTACTACAAGTAGTACCTCTACCAGCGCTTTGACTGCAAATGCTGCCCACCAATTAGGCTCCCCTGCAGCCGAAGGTATTTCAGATACAGCGCAGGCCAAATCCATGGATGTTGAGGTGAAAACTGATCTGGACATATCTGCATATGAAGCCAATACAAATTTGGCTCCTCCTGCAGAATCTGGATCTGAGGACTTTGTCAAAAATGAACCTCAGGACCTTCAATTCCATACCTGGCCTGCCTCCCCTGAATATAATATCTGGGGTGATCTGGATGAAAACTGGTTAAATAGTGTTCCTGCTTTAGAAACAGATATGACATGGGATGTTCTTTTTCACAATCCAATTGATAGCTATGTGGAAGGAGTGGACTCAGATCACAAGCTTGAGACTCAAGGACAAGCATCCCCGGAGCATCACTCTCCGCCGCAGCAGATGTATGTTTGGAAAGACTGCAAATAG___CTGGATCATGGACACTTGATTCTTGGACGCAAGGGGTTCTGTAAATCACTGCTTGTTTGTATTGCATGGGGTGTGTGCTGGATCACTGTTATGTATAGAATAGAAAACTTTAGGTCTCATCTCCTCTTTAGGCTTCCTGGTTGATTAGCTTAGTTCATTTCTAAATCATTCCCATTGCGTTATTTCGCATCTTTCTATATATAATTCTCAGGTTGCAATTTTTGAGTCAACCTGTGGATTTTTAGTAGACATTGCAGTTCTCTTAGACAACCAAGACCTCTGTCCTGAACAAGTCCCTGCGATGTTTCCAGTGCCCTTTGCACATGAACCATGGCTGGTTTTTTAAGCCATTTTCATGTCTGGCCTCTCTGGTAGAGACTGGTATAACCTGCAGCAATGCACATGCATTTTTGAATTCTAGCTTTAGTAGTTTTATTAATCTTTTAGTTATTTCCAATGGTCTTTTCAGTGATCTGGTTAACCACCCTGGCAATTTGTCTCACAAAGCAGATGATTTCTACAGTCCTCATTGCCACGTTAGAAATTTAAGGCAAGGACAATAAATCTGTAAAGTTTCTAGCTTAAGGGTGGCGAGGATGGGCTTGAATTTCAAGTCTCAGTGTAAATGTAGTTAGTAGCTGAAGCTGGTTTGCAACTTTGAAGTCATACATATATGGTAGACAGTTTTCAGTTCTGCCTAATATTACTACTTGTGATGTTGTATATGATTCAGTATGAAACATCATGCATGTATTTCATGTATTGATTTGTGTAACAGCAATCTGGTAGAAATTTTCAGTATCATGTGATTGTCA

Fln Alignment:

sp_v1.1_unigene1142___LNKESTSPKACSVAAAPEEGNLQQKSDGGRXXXXXXXXXXXXXXXXXHQLGSPAAEGISDTAQAKSMDVEVKTDLDISAYEANTNLAPPAESGSEDFVKNEPQDLQFHTWPASPEYNIWGDLDENWLNSVPALETDMTWDVLFHNPIDSYVEGVDSDHKLETQGQASPEHHSPPQQMYVWKDCK
B8LK98______________LNKGSTSPKACSVVAAPEEGNLQQKSDGGRNSTTSSTSTSALTANAAHQLGSPAAEGISDTAHAKSMDVEVKNDPEISAYEANTTLAPPAESGSEDFFKNEPQDPQFHTWPASPEYNIWGDLDENWLNSVPALETDMAWDVLFHNPFDSNVEGGDSDHKLETQGQASQELHSPPQQMYVWKDCK

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
887	83		16		0.994512
1155		16	83		0.994512
1180	16		83		0.994512
1294		50		50	1.0
1320	25		75		0.996473
1321		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain