SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1138

Length: 1844 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1138

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	55%
Blast2go	protein	-	-	65%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9SR29

Fln msg: your sequence is shorter than subject: 333 - 1206

Fln protein: VVTLAVTQCGFIIVLERLLLRCQLSVLDDHELDQGVADREFRLDGSDSSYIQEKANAVIGLMNAALSQIFLANETNRINILKMCDLLFSQLCLRISPSMASSIYSNAYIRYNTAFDSLSNSYIGYDRHDNLLFVTEQGDTHYGDDKHANRSVLGSGLIPSNCNSTSMAALLLRGYAAAPRQLVNCTPTALLYWPLIQLAGAATDDMALGNAVGSKGRGNIPGGASDTRAALLLLLIGKCATNQAAFQDVGGEEFFRSLLDDTDARVAYYTSAFLLKRMMTEEPDNYQRMLHNLVFKAQQSNNEKLLENPYLQMRGILQLSSELGSQLSFQEC*

Protein Length: 334

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGTGGATTTATTATTGTTTTGGAAAGGCTTCTTCTGCGATGTCAGCTGTCAGTGTTGGATGACCATGAACTTGACCAAGGAGTAGCTGACAGAGAATTTAGGCTGGATGGCAGTGACAGCTCATATATCCAGGAAAAAGCAAATGCTGTTATTGGCTTAATGAATGCAGCATTGTCACAAATATTTCTGGCAAACGAGACTAATCGTATCAATATTTTGAAGATGTGTGACCTGCTTTTTTCTCAGCTTTGTTTGAGAATATCTCCATCAATGGCATCTTCTATTTACAGTAATGCATATATAAGATATAACACAGCCTTTGATAGTCTCAGCAATAGTTACATTGGCTATGATAGACATGATAATTTACTGTTTGTTACCGAGCAAGGGGATACACATTACGGAGATGATAAACATGCAAATAGATCTGTATTGGGGAGTGGTTTAATACCTTCTAATTGTAATTCAACATCAATGGCAGCATTACTACTAAGGGGTTATGCTGCAGCCCCTAGGCAACTAGTAAATTGCACTCCTACGGCTCTTTTGTATTGGCCTTTGATTCAACTGGCTGGGGCAGCAACTGATGATATGGCATTAGGCAATGCTGTTGGTAGCAAGGGAAGAGGAAATATACCTGGTGGTGCTTCTGATACACGGGCAGCACTTCTATTGTTACTAATTGGTAAATGTGCTACAAACCAAGCTGCATTTCAAGATGTTGGAGGTGAAGAATTTTTTAGGTCTTTATTAGATGATACAGATGCACGTGTTGCATATTATACCTCTGCATTTCTCTTGAAGAGAATGATGACTGAAGAGCCTGACAACTACCAGCGTATGCTTCATAATCTTGTCTTTAAGGCTCAACAGAGCAACAATGAAAAATTGTTAGAGAATCCATATCTTCAAATGCGTGGTATACTTCAATTATCCAGTGAATTAGGGAGCCAATTGTCATTCCAGGAATGTTGA___TTCTTGCAAACTGGGTATCTTGACCCATATTGGTTCATCATAAAAGGGACGATAATCCTGTTACATTAACTTCAGCTGGTATCTCTTATGATTTCTACAACCCAAGGTACCCTTTGACCATATCTATGAAATCAGGCAGATTGGCCAGAAGATTCCAGCGGATGGTAGAAATTACAGGGCCAAATAACAATCAATTTGAATGCAGCAAGGCACAGAAATTAGAGTTTGGGATTCATGTTTGTAGATTAATACTTTTCTACAAGTCTATTCAAGACGAAGCTATTGGAGCAGTCTGAATGGATTATTTGATTTATCTTGTAAATCGTCATTGCAACCACCAAGGGTTGTACAGATTAAATTTCCTTTTTCAGGCAAGAGGAGCTAGAATCTAGTGACGAACCTATGAAGGAATGGCAGTCCTCAGTTTTTCTCTCATAACAATTTTTCAAATGTGAAGGCAGTGCTCGTGAACACCTTTCCTTGAGCTGTTGTGCAAGGTTATTTCCAGATTTAATAAATTTGATTGGCTGGATGGTTCAATGACGTGACTAGGTTGCTACAGCAGTCAACTTTATTCATACAAAATTTTGCGATAAAATTTGAGTCACATTGTATTAAACCGGCTTTCATAACATAAAGCTGTAATTATCATGTTGTAGATTTGTACAAATATTTTGTTCCCAATGAGTCTTATTTGTAAATTATAGCTTTTTCGCTAAAGCGATCTTTAAGCAAAAGCTCTTTGTCAAATTGGTCAACAGTGCCCTTCTCCTACTTGATAAGTTGCTGGAGTACAAGGTCATGTGAATTTTTGTCTCTTATCGTTGTAATTTATTGCTATGAT

Fln Alignment:

sp_v1.1_unigene1138___GFIIVLERLLLRCQLSVLDDHELDQGVADREFRLDGSD-----SSYIQEKANAVIGLMNAALSQIFLANETNRINILKMCDLLFSQLCLRISPSMA-----SSIYSNAY--IRYNTAFDSLSN-SYIGYDRHDNLLFVTEQGDTHYGDDKHANRSVLGSGLIPSNCNSTSMAALLLRGYAAAPRQLVNCTPTALLYWPLIQLAGAATDDMALGNAVGSKGRGNIPGGASDTRAALLLLLIGKCATNQAAFQDVGGEEFFRSLLDDTDARVAYYTSAFLLKRMMTEEPDNYQRMLHNLVFKAQQSNNEKLLENPYLQMRGI
B9SR29______________GFLFVLERLLMRCKF-LLDENEMQQ--------VNGSNVGQEHTDHRLRKANAVIDIMSSALSLVTQITETDPINILKMCDILFSQLCLKVFPSTMIQYGENTQQSKAYGGIDENKKFDGPERTSQLENSLHDGFLDETDGRSSHSINASDTRGTV-------------SMAAMLLQGQAIVPMQLVARVPAALFYWPLIQLAGAATDDIALGVAVGSKGRGNLPGAASDIRATLLLLLVGKCTADPSAFQEVGGEEFFRELLDDTDSRVAYYSSAFLLKRMMTEKPDEYQHMLQNLVFKAQQSNNEKLLENPYLQMRGI

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
1391	85		14		0.993533
1392	85		14		0.993533
1546		12		87	0.992554
1548	87			12	0.992554
1556	87			12	0.992554
1559		12		87	0.992554
1626		88		11	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain