SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1126

Length: 857 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1126

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	zinc finger protein, putative	-	-	4.00001e-40	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	protein	-	-	0.0	64%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	64%

Source	GOs	Term	Type	Identity
Blast2go	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	64%
Blast2go	protein ubiquitination	GO:0016567	Biological Process	64%
Blast2go	DNA methylation on cytosine	GO:0032776	Biological Process	64%
Blast2go	methyl-CpNpG binding	GO:0010428	Molecular Function	64%
Blast2go	methyl-CpNpN binding	GO:0010429	Molecular Function	64%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	64%
Blast2go	methyl-CpG binding	GO:0008327	Molecular Function	64%
Blast2go	nucleus	GO:0005634	Cellular Component	64%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	64%
Blast2go	Zinc finger, PHD-type	IPR001965	-	64%
Blast2go	Zinc finger, FYVE/PHD-type	IPR011011	-	64%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	64%
Blast2go	Zinc finger, PHD-type, conserved site	IPR019786	-	64%
Blast2go	Zinc finger, PHD-finger	IPR019787	-	64%

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
460		16		83	0.994512
553	88	11			0.923564
635		62	37		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain