SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1109

Length: 1064 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1109

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Imidazoleglycerol-phosphate dehydratase n=1 Tax=Picea sitchensis RepID=A9P0A9_PICSI	-	-	92%
FL-Next	sp=Imidazoleglycerol-phosphate dehydratase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	imidazoleglycerol-phosphate dehydratase	-	-	92%

Source	ECs	Term	Type	e value	Identity
Blast2go	Imidazoleglycerol-phosphate dehydratase.	EC:4.2.1.19	-	0.0	92%

Source	KEGGs	Term	Identity
Blast2go	Histidine metabolism	00340	92%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	92%
Blast2go	Metabolic pathways	01100	92%
Blast2go	Biosynthesis of secondary metabolites	01110	92%

Source	GOs	Term	Type	Identity
Blast2go	histidine biosynthetic process	GO:0000105	Biological Process	92%
Blast2go	imidazoleglycerol-phosphate dehydratase activity	GO:0004424	Molecular Function	92%
Blast2go	cytoplasm	GO:0005737	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Blast2go	Imidazoleglycerol-phosphate dehydratase	IPR000807	-	92%
Blast2go	Imidazoleglycerol-phosphate dehydratase, conserved site	IPR020565	-	92%
Blast2go	Ribosomal protein S5 domain 2-type fold	IPR020568	-	92%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P0A9

Fln msg: your sequence is shorter than subject: 203 - 314

Fln protein: RRTKGRFGEIVRVTKETNVQVKISLDGSGVSDCNTGIPFLDHMLDQIASHGLFDVQVKACGDIHIDDHHTNEDVALALGSSLLQALGDRKGIYRFGDFSAPLDEALVHVALDLSGRPYLGYDLCIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDTRRSGSIPSSKGVLSRA*

Protein Length: 204

Fln nts: CGTCGTACAAAAGGTCGCTTTGGAGAGATTGTGCGAGTGACAAAAGAAACAAATGTTCAAGTGAAAATCAGCTTGGATGGTTCAGGAGTTTCTGACTGCAATACTGGCATACCTTTTCTGGACCACATGCTGGATCAAATTGCATCACATGGGCTCTTTGACGTACAAGTAAAGGCTTGTGGGGATATCCATATTGATGACCATCATACAAATGAAGATGTTGCTCTTGCCCTTGGAAGTTCTCTACTTCAAGCTCTTGGAGATAGAAAAGGAATCTATCGTTTCGGAGATTTTTCAGCTCCTTTAGATGAAGCTCTTGTACACGTCGCCTTGGATTTATCTGGACGCCCTTACTTGGGTTACGATCTATGCATTCCTACACAAAGAGTTGGCACATATGATACACAGCTGGTGGAGCACTTCTTTCAATCTTTGGTTAATACGTCTGGGATGACCCTGCACATTCGTCAGCTTGCAGGAAAGAACTCTCACCATATAATTGAGGCCACTTTCAAAGCATTTGCAAGAGCTCTTCGGCAAGCAACTGAATATGATACTCGCCGAAGTGGAAGCATACCAAGCTCAAAGGGTGTCCTGTCTCGTGCATAA___AGAGAGAATCATTTCTCTGAAATACTGTCGTCAGACAATGGAACTCAGAATATCTGTTGTACTTTCTACAGCGTTGGAACTCCAAAGGCATGAGATCACCCGTTTGCAAGCTGCACAGACACCCAAGTTTGAATTAAGTATTGATTATTTGAAATCAGATGGTTGCATGTTAAACATAAAGAAGTTTCTACGTGTAAGGATTTTGTATATTATTACACTTTTTTTCACAGAAGACTACTCTGCAATGTTCTAATAGAATTTTAGATAGTCTGCTAGAATTCTAATTTATATTTTTTCTCCTTGATAGTTTGTTATTTTCTCTTCACTGCTATTGTAAATTTTCAATTAGCATTTTTCTTCTTAAATTTGAGTTCTTCTATGAAAAATACTGTATATATATCTGTATCATTTCCTTCATAAAGATTTAGTGTCTTTATTGCAATGTTCTAATAGAA

Fln Alignment:

sp_v1.1_unigene1109___TKGRFGEIVRVTKETNVQVKISLDGSGVSDCNTGIPFLDHMLDQIASHGLFDVQVKACGDIHIDDHHTNEDVXXXXXXXXXXXXXDRKGIYRFGDFSAPLDEALVHVALDLSGRPYLGYDLCIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDTRRSGSIPSSKGVLSRA
A9P0A9______________TKGRFGEIVRVTKETNVQVKISLDGSGISDCNTGIPFLDHMLDQIASHGLFDMQVKACGDIHIDDHHTNEDVALALGSSLLQALGDRKGIYRFGDFSAPLDEALVHVALDLSGRPYLGYDLCIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDTRRSGRIPSSKGVLSRA

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
297	88		11		0.923564
309		11		88	0.923564
379	90			10	0.90298
381	90		10		0.90298
384	90		10		0.90298
385	90			10	0.90298
392	10		90		0.90298
395		90	10		0.90298
396	90		10		0.90298
397		10		90	0.90298
398	90	10			0.90298
513		91		8	0.999766
616	92		7		0.999602
642	91		8		1.0
646	94			5	0.998744
651	94	5			0.998744
652	94			5	0.998744
653		94	5		0.998744
657		5	94		0.998744
834		9		33	1.0
835		90		10	0.999898
960	80			20	0.995493
961	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain