SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1101

Length: 1444 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1101

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein transport protein SFT2, putative	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	66%
Blast2go	protein transport protein	-	-	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Vesicle transport protein, Got1/SFT2-like	IPR007305	-	0.0	80%
Blast2go	Vesicle transport protein, SFT2-like	IPR011691	-	0.0	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NM62

Fln msg:

Fln protein: MQRTAQAWFMGGPSSTDQQKSPSLLADWNAYAASKSEDADLEAAVPESFAPLIRTANDTVMGTFNIVSKGVRDMPGNFQSAASTVPSGKSIMYFGLFLATGIFFIFISFTMFLPVMVVMPQKFAICFTLGCIFIIASFFALKGVRNQFAHMSSKERLPFTLGFIGSMAATIYVSMVLHSYILSVIFSGVQVLALSYYIISYFPGGSAGMRFLSSTLTSMVMKCFGR*

Protein Length: 228

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTTCTGATTAAAACATAGAATACGAGGGGTTAAAAGAACTATCAGCGCAACTTCTAATCTGACCGTGTCTTTCACTGGTCTAGAATTTGTGTGCATCTGCCAATAGGAACAGGAAGGACACAGAGACAGGAAGGACAGCGGGATTGCAGCATCTTCGATTGCTCGAAAAA_-_ATGCAGAGGACGGCGCAGGCGTGGTTTATGGGAGGACCCAGTAGCACCGACCAGCAAAAATCGCCTTCCCTGCTGGCAGATTGGAATGCCTATGCTGCCTCCAAGTCGGAAGATGCAGATCTGGAAGCCGCGGTGCCTGAATCCTTTGCCCCTTTGATCAGAACTGCAAATGATACAGTTATGGGCACCTTCAACATTGTGTCAAAAGGAGTGCGGGATATGCCTGGAAATTTTCAGTCAGCTGCCAGCACCGTGCCTTCAGGAAAATCCATTATGTACTTTGGATTGTTTTTGGCCACAGGCATCTTCTTCATTTTTATTTCTTTCACCATGTTCCTCCCAGTCATGGTGGTGATGCCTCAGAAGTTTGCAATATGCTTTACTCTTGGTTGCATATTTATCATAGCATCTTTTTTTGCTTTAAAAGGTGTGAGGAATCAGTTCGCCCACATGAGTTCCAAAGAGAGGCTTCCATTCACCTTGGGATTTATTGGGAGCATGGCAGCTACAATTTATGTGTCAATGGTGCTTCATAGCTATATACTATCAGTTATTTTCTCTGGCGTTCAGGTGTTGGCCCTGTCATACTATATTATCTCATACTTCCCTGGAGGGTCTGCTGGCATGAGGTTTCTCTCGTCAACACTCACGTCTATGGTGATGAAGTGTTTTGGGCGGTGA___TATGACTAGTGTCTGGATTTTCAGCCTCAGACCTTAGCTTCATTTCTCACAATTATTAACTGATACCTGCGAGGAATGCGCAACTTCAAACCAGATTCTTTGCACGGTGCTTACCAGTAATAACTAAATATGTATTATACTTCTCTGACCGGCCTTGTGTTTAATGATGTTTATTTGTTCCTAATGAAGAAAAACATCTCCCCAAGGAGTTCCGTGAGGCACATCTGTAACAGAATGTGCTAGGATTTGTATGAGTTATCTGCACGATGCTGGCTTTTTCCCAAGTAGGAATGGCAGTTCAAGCTGCTAGAGGCAGCACAAAACTTGCTCAAAGGTCTTACATGACTTCATGATCTTGAATTTTATGGTGTTTGCAGGTCATTTTTGGTCTTTATTACTGAGGCTTTTTGAAGTTTCTATATTTGCAGTTTTGTATATTTCTCAGATTCCCAACTCATTATTGTAATCTTCACTTTTCTTAAATTTAGCTTTAGTTGTTGTTGTCCAACTTAAGTGCAGAATAGAGCAATGCAAGAAAATTTGCTGTCCTGAATATTTGTACTCCCC

Fln Alignment:

sp_v1.1_unigene1101___MQRTAQAWFMGGPSSTDQQKSP-----SLLADWNAY----------AASKSEDADLEAA-VPESFAPLIRTANDTVMGTFNIVSKGVRDMPGNFQSAASTVPSGKSIMYFGLFLATGIFFIFISFTMFLPVMVVMPQKFAICFTLGCIFIIASFFALKGVRNQFAHMSSKERLPFTLGFIGSMAATIYVSMVLHSYILSVIFSGVQVLALSYYIISYFPGGSAGMRFLSSTLTSMVMKCFGR
A9NM62______________MQERVRSWFTGAHANDNDEQQPKQPSASLLAEWKAYTGASSSRPDGSASSQTGLDLEASSVPESLAPLFRSANETLLGTFNIVSKGVRDLPGNVQSAASSLPSGKALLYFGMLLATGIFFIFIALIMFLPVMVVMPRKFAICFTLGCLFIILSFFALKGPKNQLLHMASKERLPLTIGFVASMAATIYVSMVLRSYLLSVIFSGVQVLALLYYVVSYFPGGSAGMKFLLSRITSSVMKCFGQ

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
610		14		85	0.993533
633	12		87		0.992554
635			88	11	0.923564
637	88		11		0.923564
638	88		11		0.923564
677		12		87	0.992554
687	88		11		0.923564
1032		91		8	0.999807
1208		10		90	0.90298
1217	10		90		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain