SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1091

Length: 1978 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene1091
ATTGGGGATGGGGCTGGGAGATTTGATATCCTGCGTGGAAATAGTGGAGATATTAGGAGAAAAGCATTGATGGAGAGGGTCGGGGTCCTTGGAACTAAGATATGGAAGGAAGAGCTTAAAAAAATTAGTTCTAGTCCTTGCAGGGGTTATTGCAATATGTGCTCTAGTTCAAGCATGGACAACCGGGTATTCCACTGGTATTTGGTTTTCCTTCGATCGTTTCAATGGTGCTGAAACAAGCAATTACTCTATTAGTCCTCCTGCTGCTGCTATCTCACCACAGTTTAGGTATGGTGTTGTCGATCATGAAAATCACAGTATAAATAATCCGAGTTTGAGGGGTACATTTGCATTAGCTCCTGCTGGAAGCATCAATTACTCTAGTAGTCCTGCTGCTGCTATCTCACCACAGTCTAGGTATGGAGTTGTCGATCATGAACATCACAGTAAAAATAATTTGAGCTTGAGGGGTACATTTGCTTTAGCTCCTGCCGGAATTTTTCAACTTGAGATGAAAAATCAGAGTGTGATCAGTATTGCTTCGGCCAACAACTCGCTTGATTCCCATGATCTCAAGCTGAATGAGAGTGTGATCAGTGGAGACAACAGTACTACCGTCACAACGAAGGAAGAATGGGTAATAACAATCGAGCAGCAGCTGCTCTCAGCGAAATATGAAATCGAAAATGCAGCCCCTGTTCTCGACAATCCAGAGTTATACGGTCCGGTTTATCATAATGTGTCTCGTTTCAAAAGGAGCTATGAAATGATGGAGAAGGTATTGAAGGTATATGTCTATCCTGATGGAGAGAAACCCTATTTTCATGAGGGTCCCATGGTTTTCATATATGCATCAGAAGGATGGTTTATGAAACAGATGGAAGAGAATAAACAGTTTGTTACAAAGGACTTCAGGAAAGCTCACGTATATTACATGCCCTACAGTGTGTATGAGATGAGAAGAGGAATTCCTGCACCAGAACAGCATAACATGCCACAAATATCACTGTATATAAGAGACTATGTGAACACGATTGCTTCCAAGTATCCTTTTTGGAACAGAACCCATGGGCGAGATCACTTTTTTGTTGCATGCCATGATTGGGGACCTTACACAACAAAAGAGCATCCTGAACTCAGATCGAATGCTATAAAAGTTCTTTGCAATGCCGACCTATCTGAGGGCTACTTTGTATCAGGCAAGGATGGTGCTCTTCCTGAAACCAACCTGTATGGTTTACAGCAGCCACCTCGTGGTCTTGGGGGGTTGCCTATAAGAAAGCGGTCCATTCTTGCATTTTTTGCTGGAGGTAGTCATGGCAGAGTAAGGCCAGTTCTATTCAAATACTGGAAAGACAAGGACCCCAGCATGAAGATCTATGAGAACTTACCTCCAGAAATTGCAAAGGAAAAATCCTACATAAATCACATGAAGGACAGTAAATATTGCCTTTGTCCCATGGGCTATGAAGTAAGCAGTCCAAGGCTGGTGGAGGCAATTTACTATGACTGCGTCCCCGTGATAATAGCAGACCATTTTTTTCTTCCCTTCAGCGAGGTACTCAACTGGGAATCCTTTTCAATAACAGTTGCAGAGAAAGACATACCAAATTTGAAGACCATTCTTCTGGGAATTTCAGGGAGAAGGTACATGTCCATGCAATTAAGACTCAGTAAAGTTAGAAAGCATTTCTTGTGGCACAGGAATTCTCCTCAGAGATATGACATCTTTCATATGATTCTCCATTCAGTCTGGGGAAGCAGACTGAAAGAAATTGATTGTTGAGAAGTGGAAATAGTATTTATCTTTTCAAAGTCATTGAAGAGTAATATGGGAAATATTTATGAGTGCTTGATCTTCTGGCAATGCACACCATTTTATTTTGTGCTTCCTGTAAATGGTTGATGGATAACTGTAGCTCAACTAACTGAGCATTCATTCAGCAATAAAAAACACCCGAGTTTGAATTCCATAAAC

Ace file of the UniGene sp_v1.1_unigene1091

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	exostosin family protein	-	-	58%
FL-Next	sp=Probable glycosyltransferase At5g03795; Arabidopsis thaliana (Mouse-ear cress).	-	-	47%
Blast2go	exostosin family protein	-	-	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Exostosin-like	IPR004263	-	0.0	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9FFN2

Fln msg: your sequence is shorter than subject: 425 - 518

Fln protein: MKNQSVISIASANNSLDSHDLKLNESVISGDNSTTVTTKEEWVITIEQQLLSAKYEIENAAPVLDNPELYGPVYHNVSRFKRSYEMMEKVLKVYVYPDGEKPYFHEGPMVFIYASEGWFMKQMEENKQFVTKDFRKAHVYYMPYSVYEMRRGIPAPEQHNMPQISLYIRDYVNTIASKYPFWNRTHGRDHFFVACHDWGPYTTKEHPELRSNAIKVLCNADLSEGYFVSGKDGALPETNLYGLQQPPRGLGGLPIRKRSILAFFAGGSHGRVRPVLFKYWKDKDPSMKIYENLPPEIAKEKSYINHMKDSKYCLCPMGYEVSSPRLVEAIYYDCVPVIIADHFFLPFSEVLNWESFSITVAEKDIPNLKTILLGISGRRYMSMQLRLSKVRKHFLWHRNSPQRYDIFHMILHSVWGSRLKEIDC*

Protein Length: 426

Fln nts: ATTGGGGATGGGGCTGGGAGATTTGATATCCTGCGTGGAAATAGTGGAGATATTAGGAGAAAAGCATTGATGGAGAGGGTCGGGGTCCTTGGAACTAAGATATGGAAGGAAGAGCTTAAAAAAATTAGTTCTAGTCCTTGCAGGGGTTATTGCAATATGTGCTCTAGTTCAAGCATGGACAACCGGGTATTCCACTGGTATTTGGTTTTCCTTCGATCGTTTCAATGGTGCTGAAACAAGCAATTACTCTATTAGTCCTCCTGCTGCTGCTATCTCACCACAGTTTAGGTATGGTGTTGTCGATCATGAAAATCACAGTATAAATAATCCGAGTTTGAGGGGTACATTTGCATTAGCTCCTGCTGGAAGCATCAATTACTCTAGTAGTCCTGCTGCTGCTATCTCACCACAGTCTAGGTATGGAGTTGTCGATCATGAACATCACAGTAAAAATAATTTGAGCTTGAGGGGTACATTTGCTTTAGCTCCTGCCGGAATTTTTCAACTTGAG_-_ATGAAAAATCAGAGTGTGATCAGTATTGCTTCGGCCAACAACTCGCTTGATTCCCATGATCTCAAGCTGAATGAGAGTGTGATCAGTGGAGACAACAGTACTACCGTCACAACGAAGGAAGAATGGGTAATAACAATCGAGCAGCAGCTGCTCTCAGCGAAATATGAAATCGAAAATGCAGCCCCTGTTCTCGACAATCCAGAGTTATACGGTCCGGTTTATCATAATGTGTCTCGTTTCAAAAGGAGCTATGAAATGATGGAGAAGGTATTGAAGGTATATGTCTATCCTGATGGAGAGAAACCCTATTTTCATGAGGGTCCCATGGTTTTCATATATGCATCAGAAGGATGGTTTATGAAACAGATGGAAGAGAATAAACAGTTTGTTACAAAGGACTTCAGGAAAGCTCACGTATATTACATGCCCTACAGTGTGTATGAGATGAGAAGAGGAATTCCTGCACCAGAACAGCATAACATGCCACAAATATCACTGTATATAAGAGACTATGTGAACACGATTGCTTCCAAGTATCCTTTTTGGAACAGAACCCATGGGCGAGATCACTTTTTTGTTGCATGCCATGATTGGGGACCTTACACAACAAAAGAGCATCCTGAACTCAGATCGAATGCTATAAAAGTTCTTTGCAATGCCGACCTATCTGAGGGCTACTTTGTATCAGGCAAGGATGGTGCTCTTCCTGAAACCAACCTGTATGGTTTACAGCAGCCACCTCGTGGTCTTGGGGGGTTGCCTATAAGAAAGCGGTCCATTCTTGCATTTTTTGCTGGAGGTAGTCATGGCAGAGTAAGGCCAGTTCTATTCAAATACTGGAAAGACAAGGACCCCAGCATGAAGATCTATGAGAACTTACCTCCAGAAATTGCAAAGGAAAAATCCTACATAAATCACATGAAGGACAGTAAATATTGCCTTTGTCCCATGGGCTATGAAGTAAGCAGTCCAAGGCTGGTGGAGGCAATTTACTATGACTGCGTCCCCGTGATAATAGCAGACCATTTTTTTCTTCCCTTCAGCGAGGTACTCAACTGGGAATCCTTTTCAATAACAGTTGCAGAGAAAGACATACCAAATTTGAAGACCATTCTTCTGGGAATTTCAGGGAGAAGGTACATGTCCATGCAATTAAGACTCAGTAAAGTTAGAAAGCATTTCTTGTGGCACAGGAATTCTCCTCAGAGATATGACATCTTTCATATGATTCTCCATTCAGTCTGGGGAAGCAGACTGAAAGAAATTGATTGTTGA___GAAGTGGAAATAGTATTTATCTTTTCAAAGTCATTGAAGAGTAATATGGGAAATATTTATGAGTGCTTGATCTTCTGGCAATGCACACCATTTTATTTTGTGCTTCCTGTAAATGGTTGATGGATAACTGTAGCTCAACTAACTGAGCATTCATTCAGCAATAAAAAACACCCGAGTTTGAATTCCATAAAC

Fln Alignment:

sp_v1.1_unigene1091___IEQQLLSAKYEIENAA---PVLDNPELY--GPVYHNVSRFKRSYEMMEKVLKVYVYPDGEKPYFHEGPMVFIYASEGWFMKQMEENKQFVTKDFRKAHVYYMPYSVYEMRRGIPAPEQHNMPQISLYIRDYVNTIASKYPFWNRTHGRDHFFVACHDWGPYTTKEHPELRSNAIKVLCNADLSEGYFVSGKDGALPETNXXXXXXXXXXXXXXXIRKRSILAFFAGGSHGRVRPVLFKYWKDKDPSMKIYENLPPEIAKEKSYINHMKDSKYCLCPMGYEVSSPRLVEAIYYDCVPVIIADHFFLPFSEVLNWESFSITVAEKDIPNLKTILLGISGRRYMSMQLRLSKVRKHFLWHRNSP-QRYDIFHMILHSVWGSRL
Q9FFN2______________IEFKLQKARASIKAASMDDPV-DDPDYVPLGPMYWNAKVFHRSYLEMEKQFKIYVYKEGEPPLFHDGPCKSIYSMEGSFIYEIETDTRFRTNNPDKAHVFYLPFSVVKMVRYVYERNSRDFSPIRNTVKDYINLVGDKYPYWNRSIGADHFILSCHDWGPEASFSHPHLGHNSIRALCNANTSE-RFKPRKDVSIPEINLRTGSLTGLVGGPSP-SSRPILAFFAGGVHGPVRPVLLQHWENKDNDIRVHKYLP----RGTSYSDMMRNSKFCICPSGYEVASPRIVEALYSGCVPVLINSGYVPPFSDVLNWRSFSVIVSVEDIPNLKTILTSISPRQYLRMYRRVLKVRRHF--EVNSPAKRFDVFHMILHSIWVRRL

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1897	87			12	0.992554
1900	12			87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain