SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1079

Length: 1037 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1079

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	CAND1; CAND1 (CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED); binding	-	-	77%
FL-Next	Isoform 2 of Cullin-associated NEDD8-dissociated protein 1 OS=Arabidopsis thaliana GN=CAND1	-	-	77%
Blast2go	protein	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	82%
Blast2go	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	82%
Blast2go	xylem and phloem pattern formation	GO:0010051	Biological Process	82%
Blast2go	protein binding	GO:0005515	Molecular Function	82%
Blast2go	plasma membrane	GO:0005886	Cellular Component	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Armadillo-like helical	IPR011989	-	0.0	82%
Blast2go	Armadillo-type fold	IPR016024	-	0.0	82%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8L5Y6-2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 532 aas, your sequence is shorter than subject: 345 - 1217

Fln protein: VVTLAVTHCLQ**HLVQKCF*NCIQRLVLRLIERFKEREENVKMDVFNAFIELLRQTGNVRKGSGDSDTLNSSPLWMLKQEVPKLVKSLNRQLREKSVKTKVGAFSVLKELVVVLPDCLADHIGSLVPGIEKALNDNSSNSNLKIEALIFTRLVMASHSPSVFHPYIRALSGPVLSAVSDRYYKVTAEALRVCGELVRAIRPNFEMPQIFDFKPYVHPIYNAILTRLANQDQDQEVKECAISCMGLVISTFGDKLQGELPMCLPLLVDRMGNEITRLTAVKAFAVIASSHLRIDLSCVLEHVFAELTTFLRKANRALRQASLGTLNCLVVAYGDKITSSTFEAII

Protein Length: 346

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGTCTGCAGTGATAACATCTCGTCCAGAAATGCTTTTGAAACTGTATACAGAGGCTTGTCCTAAGGTTGATTGAGAGGTTTAAAGAGCGAGAAGAAAATGTCAAGATGGATGTGTTTAATGCATTTATCGAGTTGTTACGCCAGACTGGGAATGTTAGGAAAGGATCAGGAGATAGTGATACACTAAATTCAAGCCCACTGTGGATGTTGAAGCAAGAAGTTCCTAAACTAGTAAAATCTCTGAACAGACAGCTCCGGGAAAAATCAGTGAAGACTAAGGTTGGGGCATTTTCAGTCTTGAAGGAGCTTGTGGTTGTGCTACCTGACTGCCTAGCTGATCATATAGGTTCATTGGTGCCTGGAATTGAGAAAGCACTTAATGACAACTCCTCAAACTCAAATTTGAAGATTGAAGCTCTCATATTCACAAGGCTTGTGATGGCTTCACATTCACCATCTGTTTTCCATCCCTACATCAGGGCCCTTTCTGGACCAGTGCTTTCTGCTGTCAGTGATCGATATTACAAGGTTACTGCAGAGGCACTGAGGGTGTGTGGAGAGCTGGTTAGGGCAATTCGCCCAAACTTTGAGATGCCACAGATTTTTGATTTTAAGCCATATGTTCACCCCATTTACAATGCCATATTAACACGATTGGCAAATCAAGATCAGGATCAGGAGGTTAAGGAGTGTGCAATTTCTTGCATGGGATTGGTCATTTCAACATTTGGTGATAAACTTCAGGGAGAACTACCCATGTGTTTACCTCTACTTGTTGATCGCATGGGCAATGAGATAACACGCCTTACAGCAGTGAAGGCATTTGCTGTTATTGCTAGCTCTCATCTTCGGATTGATTTGTCATGTGTACTGGAGCATGTTTTTGCAGAACTAACAACATTTTTGCGGAAGGCCAATCGTGCATTAAGGCAAGCTTCACTGGGGACTCTGAATTGTTTAGTTGTTGCTTATGGTGATAAAATCACCTCATCTACATTTGAGGCTATTATCA

Fln Alignment:

sp_v1.1_unigene1079___RLIERFKEREENVKMDVFNAFIELLRQTGNVRKGSGDSDTLNSSPLWMLKQEVPKLVKSLNRQLREKSVKTKVGAFSVLKELVVVLPDCLADHIGSLVPGIEKALNDNSSNSNLKIEALIFTRLVMASHSPSVFHPYIRALSGPVLSAVSDRYYKVTAEALRVCGELVRAIRPNFEMPQIFDFKPYVHPIYNAILTRLANQDQDQEVKECAISCMGLVISTFGDKLQGELPMCLPLLVDRMGNEITRLTAVKAFAVIASSHLRIDLSCVLEHVFAELTTFLRKANRALRQASLGTLNCLVVAYGDKITSSTFEAII
Q8L5Y6-2____________KLIDRFKEREENVKMDVFNTFIDLLRQTGNVTKGQTDTD--ESSPKWLLKQEVSKIVKSINRQLREKSVKTKVGAFSVLRELVVVLPDCLADHIGSLVPGIERALNDKSSTSNLKIEALVFTKLVLASHAPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVVRPS-TAGMGFDFKPFVHPIYNAIMSRLTNQDQDQEVKECAITCMGLVISTFGDQLRAELPSCLPVLVDRMGNEITRLTAVKAFSVIATSPLHINLSCVLDHLIAELTGFLRKANRVLRQATLITMNTLVTAYGDKIGSEAYEVIL

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
384	11		88		0.923564
387		88	11		0.923564
388		88	11		0.923564
436	90		10		0.90298
506		88	11		0.923564
507	88		11		0.923564
613	85		14		0.993533
721		20		80	0.995493
726	80		20		0.995493
727	80			20	0.995493
728			20	80	0.995493
729	20			80	0.995493
730		20		80	0.995493
735		80	20		0.995493
736	80	20			0.995493
739			80	20	0.995493
740		20	80		0.995493
742		20		80	0.995493
900	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain