SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1070

Length: 2329 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

>sp_v1.1_unigene1070
TGAGCTTACGGTGGCACTTCATTATGTCTTTGATGCTCCTGAGGATAAGATATTATGGGACGTTGGCCATCAGGCTTATCCTCACAAGATTCTTACTGGAAGAAGAGATAAGATGCCCACATTAAGACAGACAAATGGCCTCTCAGGCTTTACAAAACGTTCAGAGAGTGAATATGACTGCTTTGGTGCCGGTCACAGCTCTACTAGTATATCTGCTGGGCTAGGCATGGCTGTTGGTCGTGACTTGAAAGGGAAAAACAATCATGTCATCAGTGTCATTGGAGATGGAGCCATGACAGCTGGGCAAGCTTTTGAAGCTATGAACAATGCAGGATATTTGGATTCCAACATGATAGTTATTCTGAATGACAACAAACAAGTTTCTCTGCCAACAGCAAATCTTGATGGGCCTATACCACCAGTGGGTGCACTCAGCAGTGCACTGAGTAAGCTTCAATCAAGTAAACCTTTGCGTGAACTAAGAGAGGTTGCCAAGGGTGTTACCAAACAACTGGGCGCCCCCATGCATGAACTGGCAGCAAAAGTGGACGAGTATGCACGAGGTATGATCAGTGGTTCCCGTTCCACGCTGTTTGAGGAGCTGGGACTCTATTATATAGGTCCAGTTGATGGCCACAATATTGATGATCTACTCACCATTCTTCGGGACGTCAAAGCTACACACACAACTGGGCCAGTGTTGATCCATGTTGTTACTGAGAAAGGACGGGGTTACCCATATGCAGAAAGAGCAGCTGACAAGTACCATGGTGTTGTCAAGTTTGATCCCGCCACAGGCAAGCAATTCAAGGGGAAGGCTCCAACTCAAACCTACACAACTTATTTTGCCGAGGCTTTGATTTCAGAAGCTGAAGCTGACAAAAATATTGTTGCAATCCATGCTGCAATGGGTGGAGGCACTGGCCTAAATATGTTTTCCAAGCGCTTTCCTACAAGATGTTTTGATGTTGGAATAGCAGAACAACATGCTGTCACTTTTGCTGCAGGGTTGGCTTGTGAAGGCCTGAAGCCTTTTTGTGCTATATATTCCTCTTTTCTGCAAAGGGCCTATGATCAGGTTATACATGATGTAGACCTGCAGAAATTGCCTGTCAGATTTGCGATGGATAGAGCAGGGCTAGTTGGAGCAGATGGTCCAACTCATTGTGGAGCATTTGATGTGACTTATTTGGCTTGTCTTCCAAATATGGTAGTCATGGCACCTTCGAACGAGGCCGAACTATTTCACATGGTTGCAACCGCAGCTGCTATTGATGATCGCCCTAGTTGCTTCAGATTTCCACGAGGCAATGGAGTAGGTGCACAGCTGCCACCTGGTAACAAAGGAGTACCCTTAGAGATTGGGAAAGGTAGAATTTTAGTTGAAGGTGATCGAATAGCAATCTTAGGGTATGGTACTGTTGTTCAAAATTGCCTTGCTGCCAGTGCTTTACTGGAAGAGCAAGATTTATCTGTGACAGTTGCAGATGCCAGATTCTGCAAGCCACTTGATCGTGATCTAATTCGATCTCTTGCAAGGGAGCACGAGGTATTAATAACAGTCGAGGAGGGAACAATAGGAGGTTTTGGATCACATGTTGCTCATTTTCTGGCTTTAGATGGTTTCTTGGACGGGAAATTAAAGTGGAGACCAATGGTTCTTCCTGACCACTACATCGAACACGGGGCTCCAAGTGATCAAATGATTGAAGCCGGTTTGACAGCATCTCATATCGCGGCATCAGTATTGAATGTGCTGGGGCGAACAAGAGAAGCACTGCAAGTAATGTCTTGAAGATGTCAAATGATTGGATTCCAAGGTGTTAATCAGAGGGCATTTCTGAGCTGCTCTTCTTACCATCTCGAGCTGCAAGCCATAGCAGCTCATAAAGTCTGGCATATAGTGTACTTTATCGAAAAGCTGTCATCTTTCTCTATCCGATTCGGATGGCCAAATCACCATCACATTGATACAGCTGTTCCTGGTTGTTCATTGTCTGGTTTTGGTTGATTGGATGACGGGCAATTGAACTTTTTAATTTTGATTGTACAACATCCGATTATAAATGTCGAGTTCTTATGTCTGCTGTCTCAGACATATCGAGGATCTCGATATCTGTAAAAGTAATGTATTTATGTTACAGTTGCCCACTGTCATACCAGCTTTCCTTGGATTATCTCCATGAGAAGTCATTTCCTTTTTTTGCTAACAAGGCGAGACGGTTGGCCATCTTCTTATGAATGTTGCATGTCAATTTGGCATCTGACTATGGTGTTACCTTAATTATATTCTTATTATCATGCTCTCTCTCAGAGAAGCACAACTCTG

Ace file of the UniGene sp_v1.1_unigene1070

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	1-deoxy-D-xylulose 5-phosphate synthase type I n=3 Tax=Pinaceae RepID=A7LA00_PICAB	-	-	93%
FL-Next	tr=Putative 1-D-deoxyxylulose 5-phosphate synthase type 1; Pinus densiflora (Japanese red pine).	-	-	96%
Blast2go	1-deoxy-d-xylulose 5-phosphate synthase	-	-	94%

Source	InterPros	Term	Type	Identity
Blast2go	Dehydrogenase, E1 component	IPR001017	-	94%
Blast2go	Transketolase-like, pyrimidine-binding domain	IPR005475	-	94%
Blast2go	Transketolase, C-terminal	IPR005476	-	94%
Blast2go	Deoxyxylulose-5-phosphate synthase	IPR005477	-	94%
Blast2go	Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II	IPR009014	-	94%
Blast2go	Transketolase-like, C-terminal	IPR015941	-	94%
Blast2go	Transketolase binding site	IPR020826	-	94%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B9U4U6

Fln msg: your sequence is shorter than subject: 598 - 707

Fln protein: ELTVALHYVFDAPEDKILWDVGHQAYPHKILTGRRDKMPTLRQTNGLSGFTKRSESEYDCFGAGHSSTSISAGLGMAVGRDLKGKNNHVISVIGDGAMTAGQAFEAMNNAGYLDSNMIVILNDNKQVSLPTANLDGPIPPVGALSSALSKLQSSKPLRELREVAKGVTKQLGAPMHELAAKVDEYARGMISGSRSTLFEELGLYYIGPVDGHNIDDLLTILRDVKATHTTGPVLIHVVTEKGRGYPYAERAADKYHGVVKFDPATGKQFKGKAPTQTYTTYFAEALISEAEADKNIVAIHAAMGGGTGLNMFSKRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFLQRAYDQVIHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTYLACLPNMVVMAPSNEAELFHMVATAAAIDDRPSCFRFPRGNGVGAQLPPGNKGVPLEIGKGRILVEGDRIAILGYGTVVQNCLAASALLEEQDLSVTVADARFCKPLDRDLIRSLAREHEVLITVEEGTIGGFGSHVAHFLALDGFLDGKLKWRPMVLPDHYIEHGAPSDQMIEAGLTASHIAASVLNVLGRTREALQVMS*

Protein Length: 599

Fln nts: TGAGCTTACGGTGGCACTTCATTATGTCTTTGATGCTCCTGAGGATAAGATATTATGGGACGTTGGCCATCAGGCTTATCCTCACAAGATTCTTACTGGAAGAAGAGATAAGATGCCCACATTAAGACAGACAAATGGCCTCTCAGGCTTTACAAAACGTTCAGAGAGTGAATATGACTGCTTTGGTGCCGGTCACAGCTCTACTAGTATATCTGCTGGGCTAGGCATGGCTGTTGGTCGTGACTTGAAAGGGAAAAACAATCATGTCATCAGTGTCATTGGAGATGGAGCCATGACAGCTGGGCAAGCTTTTGAAGCTATGAACAATGCAGGATATTTGGATTCCAACATGATAGTTATTCTGAATGACAACAAACAAGTTTCTCTGCCAACAGCAAATCTTGATGGGCCTATACCACCAGTGGGTGCACTCAGCAGTGCACTGAGTAAGCTTCAATCAAGTAAACCTTTGCGTGAACTAAGAGAGGTTGCCAAGGGTGTTACCAAACAACTGGGCGCCCCCATGCATGAACTGGCAGCAAAAGTGGACGAGTATGCACGAGGTATGATCAGTGGTTCCCGTTCCACGCTGTTTGAGGAGCTGGGACTCTATTATATAGGTCCAGTTGATGGCCACAATATTGATGATCTACTCACCATTCTTCGGGACGTCAAAGCTACACACACAACTGGGCCAGTGTTGATCCATGTTGTTACTGAGAAAGGACGGGGTTACCCATATGCAGAAAGAGCAGCTGACAAGTACCATGGTGTTGTCAAGTTTGATCCCGCCACAGGCAAGCAATTCAAGGGGAAGGCTCCAACTCAAACCTACACAACTTATTTTGCCGAGGCTTTGATTTCAGAAGCTGAAGCTGACAAAAATATTGTTGCAATCCATGCTGCAATGGGTGGAGGCACTGGCCTAAATATGTTTTCCAAGCGCTTTCCTACAAGATGTTTTGATGTTGGAATAGCAGAACAACATGCTGTCACTTTTGCTGCAGGGTTGGCTTGTGAAGGCCTGAAGCCTTTTTGTGCTATATATTCCTCTTTTCTGCAAAGGGCCTATGATCAGGTTATACATGATGTAGACCTGCAGAAATTGCCTGTCAGATTTGCGATGGATAGAGCAGGGCTAGTTGGAGCAGATGGTCCAACTCATTGTGGAGCATTTGATGTGACTTATTTGGCTTGTCTTCCAAATATGGTAGTCATGGCACCTTCGAACGAGGCCGAACTATTTCACATGGTTGCAACCGCAGCTGCTATTGATGATCGCCCTAGTTGCTTCAGATTTCCACGAGGCAATGGAGTAGGTGCACAGCTGCCACCTGGTAACAAAGGAGTACCCTTAGAGATTGGGAAAGGTAGAATTTTAGTTGAAGGTGATCGAATAGCAATCTTAGGGTATGGTACTGTTGTTCAAAATTGCCTTGCTGCCAGTGCTTTACTGGAAGAGCAAGATTTATCTGTGACAGTTGCAGATGCCAGATTCTGCAAGCCACTTGATCGTGATCTAATTCGATCTCTTGCAAGGGAGCACGAGGTATTAATAACAGTCGAGGAGGGAACAATAGGAGGTTTTGGATCACATGTTGCTCATTTTCTGGCTTTAGATGGTTTCTTGGACGGGAAATTAAAGTGGAGACCAATGGTTCTTCCTGACCACTACATCGAACACGGGGCTCCAAGTGATCAAATGATTGAAGCCGGTTTGACAGCATCTCATATCGCGGCATCAGTATTGAATGTGCTGGGGCGAACAAGAGAAGCACTGCAAGTAATGTCTTGA___AGATGTCAAATGATTGGATTCCAAGGTGTTAATCAGAGGGCATTTCTGAGCTGCTCTTCTTACCATCTCGAGCTGCAAGCCATAGCAGCTCATAAAGTCTGGCATATAGTGTACTTTATCGAAAAGCTGTCATCTTTCTCTATCCGATTCGGATGGCCAAATCACCATCACATTGATACAGCTGTTCCTGGTTGTTCATTGTCTGGTTTTGGTTGATTGGATGACGGGCAATTGAACTTTTTAATTTTGATTGTACAACATCCGATTATAAATGTCGAGTTCTTATGTCTGCTGTCTCAGACATATCGAGGATCTCGATATCTGTAAAAGTAATGTATTTATGTTACAGTTGCCCACTGTCATACCAGCTTTCCTTGGATTATCTCCATGAGAAGTCATTTCCTTTTTTTGCTAACAAGGCGAGACGGTTGGCCATCTTCTTATGAATGTTGCATGTCAATTTGGCATCTGACTATGGTGTTACCTTAATTATATTCTTATTATCATGCTCTCTCTCAGAGAAGCACAACTCTG

Fln Alignment:

sp_v1.1_unigene1070___ELTVALHYVFDAPEDKILWDVGHQAYPHKILTGRRDKMPTLRQTNGLSGFTKRSESEYDCFGAGHSSTSISAGLGMAVGRDLKGKNNHVISVIGDGAMTAGQAFEAMNNAGYLDSNMIVILNDNKQVSLPTANLDGPIPPVGXXXXXXXXXXXXXXXRELREVAKGVTKQLGAPMHELAAKVDEYARGMISGSRSTLFEELGLYYIGPVDGHNIDDLLTILRDVKATHTTGPVLIHVVTEKGRGYPYAERAADKYHGVVKFDPATGKQFKGKAPTQTYTTYFAEALISEAEADKNIVAIHAAMGGGTGLNMFSKRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFLQRAYDQVIHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTYLACLPNMVVMAPSNEAELFHMVATAAAIDDRPSCFRFPRGNGVGAQLPPGNKGVPLEIGKGRILVEGDRIAILGYGTVVQNCLAASALLEEQDLSVTVADARFCKPLDRDLIRSLAREHEVLITVEEGTIGGFGSHVAHFLALDGFLDGKLKWRPMVLPDHYIEHGAPSDQMIEAGLTASHIAASVLNVLGRTREALQVMS
B9U4U6______________ELTVALHYVFDAPEDKILWDVGHQAYPHKILTGRRDKMPTLRQTNGLSGFTKRSESEYDCFGAGHSSTSISAGLGMAAGRDLKGKNNHVISVIGDGAMTAGQAFEAMNNARYLDSNMIVILNDNKQVSLPTANLDGPIPPVGALSKLQSSKPL----RELREVAKGVTKQLGAPMHELAAKVDEYARGMISGSRSTLFEELGLYYIGPVDGHNIDDLLTILRDVKATHTTGPVLIHVVTEKGRGYPYAERAADKYHGVVKFDPATGKQFKGKAPTQTYTTYFAEALISEAEADKNIVAVHAAMGGGTGLNMFSKRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFLQRAYDQVIHDVDLQNLPVRFAMDRAGLVGADGPTHCGAFDVTYLACLPNMVVMAPSNEAELFHMVATAAAIDDRPSCFGFPRGNGVGAQLPPGNKGVPLEIGKGRILVEGDRVALLGYGTVVQNCLAASALLEEQDLSVTVADARFCKPLDRDLVRSLAREHEVLITVEEGTIGGFGSHVAHFLALDGFLDGKLKWRPMVLPDHYIEHGAPSDQMIEAGLTASHIAASVLNMLGRTREALQVMS

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
798	71			28	1.0
857	10	90			0.90298
860			10	90	0.90298
922	87		12		0.992554
945	11		88		0.923564
954		11		88	0.923564
987	88		11		0.923564
999		12		87	0.992554
1353	85		14		0.993533
1484		20		80	0.995493
1577		85		14	0.993533
1981	12		87		0.999964
2046			88	11	0.923564
2124	88	11			0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain