SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1067

Length: 1616 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1067

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ankyrin repeat domain protein, putative n=1 Tax=Ricinus communis RepID=B9RF69_RICCO	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	43%
Blast2go	ankyrin repeat domain	-	-	68%

Source	ECs	Term	Type	e value	Identity
Blast2go	Chlorophyllide-a oxygenase.	EC:1.13.12.14	-	0.0	68%

Source	KEGGs	Term	Identity
Blast2go	Porphyrin and chlorophyll metabolism	00860	68%
Blast2go	Metabolic pathways	01100	68%
Blast2go	Biosynthesis of secondary metabolites	01110	68%

Source	GOs	Term	Type	Identity
Blast2go	chlorophyll biosynthetic process	GO:0015995	Biological Process	68%
Blast2go	response to high light intensity	GO:0009644	Biological Process	68%
Blast2go	chlorophyllide a oxygenase [overall] activity	GO:0010277	Molecular Function	68%
Blast2go	identical protein binding	GO:0042802	Molecular Function	68%
Blast2go	signal recognition particle, chloroplast targeting	GO:0080085	Cellular Component	68%
Blast2go	chloroplast inner membrane	GO:0009706	Cellular Component	68%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	68%

Source	InterPros	Term	Type	Identity
Blast2go	Chromo domain/shadow	IPR000953	-	68%
Blast2go	Ankyrin repeat	IPR002110	-	68%
Blast2go	Chromo domain-like	IPR016197	-	68%
Blast2go	Ankyrin repeat-containing domain	IPR020683	-	68%
Blast2go	Chromo domain	IPR023780	-	68%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLM1

Fln msg: your sequence is longer than subject: 304 - 270

Fln protein: GTVKKIIGSRAVGGNMQYLIEWEDGHRPTWVPSANIARDVVEEYEGPWWAAVKKADENNLRKLLEDVERDVDAVDENGRTALLFAAGLGSENCIRLLADAGADLDKQDNEGFTALHIAAGYVKQGAVRTLVELGADPEIEDSQGRNPIVLVRDLLSKTSRSNPLQFARRLALEGVIKVLEDSVFENVEVEQVLDKRTGVGGKVEYLVKWKDGAPEEWLAAESIGEDLVKDYEAGLEYGIAENILERREENGMIEYLVKWADIELPTWEPLENVAPDLVAEFENVSVKDVEDRLVTQDNNIDSS*

Protein Length: 305

Fln nts: TGGAACAGTTAAAAAGATAATTGGGAGCAGGGCTGTTGGGGGGAACATGCAGTATTTGATAGAATGGGAGGATGGGCATAGGCCTACGTGGGTTCCCTCTGCAAACATTGCTAGGGATGTTGTAGAAGAGTATGAAGGTCCATGGTGGGCAGCTGTTAAGAAAGCTGACGAGAACAATCTTAGAAAGCTTTTGGAAGATGTGGAAAGGGATGTGGATGCTGTAGATGAGAATGGGAGAACAGCTCTGCTGTTTGCAGCTGGATTGGGATCTGAAAATTGTATTAGGTTGCTGGCCGATGCCGGCGCAGACCTTGATAAACAAGACAATGAAGGTTTCACTGCCCTGCATATTGCTGCTGGATATGTGAAGCAAGGGGCAGTAAGAACTCTTGTGGAACTGGGTGCTGATCCAGAAATTGAGGATTCTCAGGGAAGAAATCCTATTGTACTTGTACGGGATCTTTTGTCAAAAACCTCGAGATCCAATCCTCTTCAGTTCGCGAGGCGGTTGGCCTTAGAAGGTGTGATTAAGGTCCTCGAAGATTCAGTTTTTGAAAATGTAGAGGTTGAGCAGGTTCTCGACAAGCGCACTGGGGTGGGAGGCAAGGTGGAATATTTGGTGAAGTGGAAGGATGGTGCTCCTGAGGAGTGGTTGGCAGCAGAGTCCATTGGGGAGGACTTGGTGAAGGATTATGAGGCTGGGTTGGAATATGGGATAGCTGAAAATATTTTGGAGAGGAGAGAGGAGAATGGAATGATAGAGTATTTGGTAAAATGGGCTGATATTGAGTTGCCCACATGGGAGCCTCTAGAGAATGTGGCTCCAGATCTTGTTGCTGAATTTGAAAATGTCTCAGTAAAAGACGTGGAGGACAGACTGGTTACACAAGACAACAATATTGATTCATCTTGA___CACAGTTTGCTATTACGGCATCACGCTTTTGCATAAAGCAGGGATAGTAGTCTTCTTTTTTCTATGCAGAGAAGTTGGCATAGTCTCTGTGAAGACCAATTTGGAGGTATCTTTAAAATTTTAAATAGTTACTGGAGAGAATGGCATTCGTTCCTTTATCAATCCACTGGGGGATTAATGAAGTTTGTTTGTCACGCATGGAAGGGTTCTGATTTAATTGCTGTTTAACACTTTGATATGGCATACAAATCTTTATATGTGCGTTGTCAATTTAGAAGATGATTTGTTCTTCACCTTGTCTCGGGTTTCAATAGTACAGTCTGACCATTTATTACTATACAGGAGAACTGGAGTTTTACCCTACAGGTTTTCTGTTTTCAGGCTAATCCTCTCTTAAGAGTTGAATTTTACTGGTTTGGACGAGAACAAGTCTGGGAACACGACAGACAACTCCAGTCCTAGGGAAATCAAGTGTTGTTTGTATATATTCTGTTGGTTGCATCTTAGGTTGATGGTATAGCATTCTCTGTTATGGTTGCTATCTTAGGTTGATGGTATAGCATTCTCTGTTATGGTTGCATCAGATGTAAACGTTTGAGCAGTTTCTGTTATGGTTTCTAGGTTTCAACCTTCCCAGGGATTGTTTATTTCCAACAAATTATATTTGAATTTATCCTTTGGTGGATTTGCTTTGAGTTTCAAG

Fln Alignment:

sp_v1.1_unigene1067___GRTALLFAAGLGSENCIRLLADAGADLDKQDNEGFTALHIAAGYVKQGAVRTLVELGADPEIEDSQGRNPI
B8LLM1______________GRTALHFACGYGEVKCAEILLEAGAAVDALDKNKNTALHYAAGYGRKECVELLLKHGAAVTLQNLDGKTPI

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
540	20	80			0.995493
615	80		20		0.995493
625	80		20		0.995493
702		16		83	0.994512
795	16		83		0.994512
896	71		28		1.0
903		12		87	0.992554
905	87			12	0.992554
906		12		87	0.992554
908		87	12		0.992554
910		12		87	0.992554
915	87		12		0.992554
917	87			12	0.992554
920		12	87		0.992554
922		12		87	0.992554
923	12			87	0.992554
1015			20	80	0.995493
1021			80	20	0.995493
1102		12		87	0.992554
1105		12		87	0.992554
1109		87	12		0.992554
1114	87			12	0.992554
1118	85	14			0.993533
1119	85			14	0.993533
1121			85	14	0.993533
1122		14	85		0.993533
1123	14			85	0.993533
1127		14	85		0.993533
1138		14		85	0.993533
1145	16	83			0.994512
1247	75		25		1.0
1332			25	75	1.0
1416		87		12	0.992554
1521		85		14	0.993533
1544	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain