SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1065

Length: 1383 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1065

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	D-lactate dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9SDP2_RICCO	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	fad linked oxidase family protein	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	D-lactate dehydrogenase.	EC:1.1.1.28	-	0.0	83%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Pyruvate metabolism	00620		0.0	83%
Blast2go	Glycolate dehydrogenase.	EC:1.1.99.14	-	0.0	83%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glyoxylate and dicarboxylate metabolism	00630		0.0	83%
Blast2go	Metabolic pathways	01100		0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	glycolate oxidase activity	GO:0008891	Molecular Function	83%
Blast2go	D-lactate dehydrogenase activity	GO:0008720	Molecular Function	83%
Blast2go	ATP binding	GO:0005524	Molecular Function	83%
Blast2go	glycolate dehydrogenase activity	GO:0019154	Molecular Function	83%
Blast2go	mitochondrion	GO:0005739	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Blast2go	FAD-linked oxidase, C-terminal	IPR004113	-	83%
Blast2go	FAD linked oxidase, N-terminal	IPR006094	-	83%
Blast2go	FAD-linked oxidase-like, C-terminal	IPR016164	-	83%
Blast2go	FAD-binding, type 2	IPR016166	-	83%
Blast2go	FAD-binding, type 2, subdomain 1	IPR016167	-	83%
Blast2go	FAD-linked oxidase, FAD-binding, subdomain 2	IPR016168	-	83%
Blast2go	Vanillyl-alcohol oxidase, C-terminal subdomain 2	IPR016171	-	83%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWI6

Fln msg: your sequence is shorter than subject: 407 - 580

Fln protein: VKACNKYKIPIVPYGGATSIEGHTLAPHGGLCIDMTSMKNVKALHLEDMDVVVEPGIGWIELNEYLLPYGLFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVINLQVVLANGDVVKTASRARKSAAGYDLTRLLIGSEGTLGVITQVTLRLQKIPESTVVAMCNFPTIKDAADVAIATMHSGIQVSRVELLDEVQVHALNNANGKDLPEFPTLMFELVGTEAYAREQTLRVQNISKEHHGFDFVFVETPEEKEKLWKMRKEALWANLAMEPECEAMTTDVCVPLSHLAEVIARSKAEIDSSPLTCPVIAHAGDGNFHTIILFNPEIEEHRQEAERLNNFMVNAALLLEGTCTGEHGVGTGKMKYLEKELGSEALKTMAMIKHAVDPNNIMNPGKLIPPHVCF*

Protein Length: 408

Fln nts: GTCAAGGCATGCAATAAATACAAGATTCCTATTGTACCATATGGTGGGGCTACCTCAATTGAAGGACACACTTTAGCTCCCCATGGAGGATTGTGCATTGACATGACATCAATGAAGAATGTCAAAGCATTGCATCTTGAAGATATGGATGTTGTAGTTGAGCCAGGCATTGGATGGATAGAGCTAAATGAATATTTATTACCCTATGGTCTATTCTTCCCTCTGGATCCTGGACCTGGAGCTACAATTGGAGGCATGTGCGCAACACGTTGCTCTGGCTCTCTTGCAGTAAGATATGGAACTATGCGTGATAATGTTATTAATCTCCAGGTGGTTCTAGCAAATGGGGATGTTGTTAAGACGGCATCCCGTGCACGCAAGAGTGCAGCCGGATATGATTTAACACGGCTACTCATTGGAAGTGAAGGGACGCTAGGTGTAATAACACAAGTAACATTGCGTCTACAGAAGATTCCAGAATCAACTGTGGTTGCAATGTGCAATTTTCCTACTATAAAAGATGCAGCTGATGTGGCTATTGCTACCATGCATTCAGGTATTCAGGTTTCAAGAGTGGAACTTTTAGATGAAGTTCAAGTACATGCTCTCAACAATGCAAATGGAAAGGACCTACCTGAATTTCCAACATTAATGTTTGAGCTTGTTGGGACAGAAGCTTATGCCCGTGAGCAAACACTCCGTGTGCAAAACATTTCCAAAGAGCATCATGGATTTGACTTTGTATTTGTTGAAACCCCCGAGGAGAAAGAGAAGTTATGGAAGATGAGAAAGGAGGCACTTTGGGCCAACTTGGCAATGGAGCCTGAATGTGAAGCAATGACAACGGATGTTTGTGTCCCATTATCTCATCTTGCGGAAGTTATTGCGAGAAGTAAAGCAGAAATTGACTCTTCACCTCTAACATGTCCAGTTATAGCCCATGCTGGTGATGGGAATTTCCACACTATAATATTATTTAATCCTGAGATAGAAGAACATAGACAAGAAGCGGAACGCTTGAATAATTTTATGGTCAATGCTGCATTATTGTTGGAAGGTACCTGCACTGGCGAGCACGGTGTAGGAACGGGTAAAATGAAGTATCTTGAAAAGGAGCTAGGTAGTGAGGCACTGAAAACAATGGCGATGATAAAGCATGCAGTGGATCCCAACAATATTATGAACCCGGGAAAGCTTATCCCTCCTCATGTTTGTTTCTAA___AAGAATGTATAAATTGAAATCAAATTAAGGATAATAGATAAGTGTTTCATTTGGTAACAGTGCTCACGGATTAGATCCAAAGAACATCTTGATCTGAGTATATGATATTGTACAGCGCCAAAAGGATTCGTTCTTATCAGCAACGTCATATGGTATAACATT

Fln Alignment:

sp_v1.1_unigene1065___VKACNKYKIPIVPYGGATSIEGHTLAPHGGLCIDMTSMKNVKALHLEDMDVVVEPGIGWIELNEYLLPYGLFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVINLQVVLANGDVVKTASRARKSAAGYDLTRLLIGSEGTLGVITQVTLRLQKIPESTVVAMCNFPTIKDAADVAIATMHSGIQVSRVELLDEVQVHALNNANGKDLPEFPTLMFELVGTEAYAREQTLRVQNISKEHHGFDFVFVETPEEKEKLWKMRKEALWANLAMEPECEAMTTDVCVPLSHLAEVIARSKAEIDSSPLTCPVIAHAGDGNFHTIILFNPEIEEHRQEAERLNNFMVNAALLLEGTCTGEHGVGTGKMKYLEKELGSEALKTMAMIKHAVDPNNIMNPGKLIPPHVCF
A9NWI6______________VKACNKYKIPIVPYGGATSIEGHTLAPHGGLCIDMTSMKNVKALHLEDMDVVVEPGIGWIELNEYLLPYGLFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVINLQVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGVITQVTLRLQKIPESTVVAMCNFPTIKDAADVAIATMHSGIQVSRVELLDEVQVHAINNANGKDLPEFPTLMFEFVGTEAYAREQTVRVQNISVEHHGFDFVFVETPEEKEKLWKMRKEALWANLALEPECEAMTTDVCVPLSHLAEVIARSKAEIDSSPLTCPVIAHAGDGNFHTVILFNPEKEEHRQEAERLNNFMVHAALLMEGTCSGEHGVGTGKMKYLEKELGIEALRTMALIKHAVDPNNIMNPGKLIPPHVCF

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
109	87		12		0.992554
110			12	87	0.992554
224	16	83			0.994512
248	83		16		0.994512
478	77		22		0.999999
479			77	22	0.999999
480	77	22			0.999999
481	77		22		0.999999
483		77	22		0.999999
485	77	22			0.999999
492		22		77	0.999999
495		77		22	0.999999
496	77	22			0.999999
499		22	77		0.999999
501		22	77		0.999999
502	22	77			0.999999
968	80			20	0.995493
1049		16		83	0.999991
1137	70		30		1.0
1157	30	70			1.0
1210		28		71	1.0
1211	42		57		1.0
1216		14		71	0.984337
1295	85		14		0.993533
1316	28	71			1.0
1317		14		85	0.993533
1329	87		12		0.992554
1330			12	87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain