SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1064

Length: 3468 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene1064
AGTTTCATTTCAGTGTTCAACGAGAACAANNNCNNNANCNNNGCTTCACTCAACAGGCAGCTGCTCTCCAGATCCCTCTCTGCACCACACAGCGCCACTCGACGAAAACTGCCTGAGGACGATCAGTCTGCGTGGAGGGGAAATACGCCAAAATAATCTGTTATTCAAAGACCCGTGGTATCATGGAAAGGCCACAGGGGGGCAGCGTTGAGGAATCAACATCGGCTGATCTGCTCGTATTCTGCGCAGCTAGGGCTTTATCCTCCGGCTTCTAGCGGTCTTCGACGCGGTTTTATATTAATTACTTAATATTTTTGATTTCCAGTTATGCAGTCAATAGCCGAAGTCAGGGTTTGATTCATCCGCGTGATCCTTTTAACGGAGGCCAGGGTTTGATTCGTCCACGTGATCTTCATAAATACCGCGCTTTTGAAAGAGAAAATGAGTTTTGGTACTGTTGTTATCTTCATCGGTGTCCTTGAAGGACAAGGAAGAAGCGTGCGGTGACGGGAGCGACCGTGGACAAGAATTGGGGGAGCAGGTGCTCGGCTTTCCTTGCACATATATGCTGCCCCGAATTGTTATCATTATCAGTATTATTATCTTCTCCCAACGGCGACAGAATGACGGATATATCTTCTCTTCTTCCTACGTCCGTGCTCCGAAATCTGGCGGACAAGCTCTACGAGAAGCGCAAAAACGCGGCCTTGGAGGTTGAAGGAGTTGTCAGAACATTGACTGCTGCTGGTGACCATGAAAAGATATCGGCAATAATCAATGTGCTGACGCATGAATTTGCCTTGTCTCCTCAAGCAAATCATCGAAAAGGTGGTTTAATAGGGTTGGCTGCGGCAACTGTTGGTTTGGCATCAGAAGCTGCTCAGCATCTGGAGCAAATTGTTCCACCTGTTCTCAACTCTTTTTCTGATCAAGATAGCAGAGTCCGTTATTATGCCTGTGAAGCCCTCTATAACATTGCAAAGGTTGCAAGAGGGGAACGTCGTGACCTTGGCTGTCACTCAATTTTTGATGCGCTATGCAAACTTTCAGCAGATTCAGATGCTAATGTTCAAAGCGCTGCACATCTTTTAGATCGCCTGGTTAAGGACATTGTTACAGAAAGTGACCAGTTCAGCATCGAGGAGTTTATACCACTTTTAAGGGAGCGCATGAATGTTCTCAACCCTTATGTACGCCAATTCTTAGTGGGATGGATTACTGTTTTGGACAGTGTTCCTGACATTGATATGCTGGGCTTCTTGCCAGACTTTCTTGATGGCCTCTTCAATATGCTTAGTGATTCTAGCCATGAGATACGGCAACAGGCAGATTCTGCACTTTCTGAATTCTTACAAGAGATAAAGAACTCTCCGTCGGTAGACTATGGGCGCATGGCTGAGATATTAGTGCTAAGGGCTAGCTCTACAGATGAGTTTACTCGGTTGACATCCATCACATGGATGAATGAATTTGTTAAGCTTGGTGGAGACCAGCTGGTTCCTTATTATGCTGATATTTTGGGAGCAATTTTGCCATGCATCTCTGACAAAGAAGAGAAAATAAGAGTGGTTGCTCGTGAAACCAATGAAGAGCTTCGTGCAATTAAGGCTGGGCCTACTGAGGGATTTGATATTGGAGCAGTGCTTACCATTGCTAGGAGAGAACTGTCAAATGAATGCGAAGCTACAAGGATTGAGGCATTACATTGGATGGCAGTTCTTCTAGAGAAACATCGAAAAGAGGTCATATCATTTCTTGATGATATTTTTCCTGCACTTCTTGATGCTCTCTCAGATCCGTCTGAAGATGTAGTGTTGCTAGTTCTAGAAGTCCATGCTTGCATAGCAAGAGATGCACCACATTTTCGCCATCTTGTTGTCTTCCTTGTGCATCATTTCCGGATGGACCATTCACTTCTTGAGAAGCGGGGAACATTGATACTACGGAGGCTATGCATTCTTTTAGATGCTGAACGAGTGTATCGAGAGTTATCGACTATCTTGGAAGGAGAAGCCGATTTAGATTTTGCCTCAGTCATGGTTCAGGCACTTAATTTAATCCTTCTTAATTCCTCCGAGTTGGCTGAACTTCGAGCACTGATAAAGCAATCTTTGTCCAACCCTTCTGGACGAGATTTATTTAATGCCTTGTACTCTTCCTGGTGTCATTCACCAATGGCAACAATAAGTCTCTGCCTATTGGCTCAGGCATATCAACATGCCAGTGCTGTAATTCAATCACTAGTAGAGGAAGACATTAATGTGAAGTTTCTGGTGCAACTGGACAAGCTTGTTCGTCTACTTGAGACACCAATCTTCACATATTTGAGACTGCAGCTTTTAGATCCTGGACGATATACATGGTTGCTGAAAACTCTTTATGGTCTTTTGATGCTACTTCCTCAGCAAAGTGCTGCATTCAAGATTCTAAGGACACGATTGAAGACAGTTCCAGCATACACCTTCAGTGGTGAACTTCCAAACATTAGTGCTAATGCAATTAGGCGAACGGCTTCAGGAAATCCCTATTCACAAATCTTGTCTCATATTCCTTCCCTTCCAAGTGGCTCACAGAATGTTGAAGATGGAGACAGAAACACAGATATCAGCAATGGAACTAATGGAATCAATTTTACCATGAGGTTGCAGCAGTTTGAGCACATGCAACGCCAGCATCGCTTACATTGCAAATCACAATCACAGATGACCAGGCAGACACGACAATCTAATTCATCAGGCACTGCACAGGAGGCGCAAAGATCAGATGAACCCCGAAGATCATCACTGCCAGCAGCAGATTCAAGTCGACCACCTTCAAGATCGTCATGGCGATCTTAGTGCTAAATTAAGATTCTAGCTTTCTCCATTTTTTGTGTGCATCATTCGACTCCTGGGGCAAGCTTTTGAGGCACGTGTAATTTTATTGTCTTTCAAGGAGTGTTATTTATGCAGCTGCCCACTGCAAATACTAGATACTATTTACTGCTTTCTTGTGAGAGCATACATCCACCAACATCTGGTTCTCTTCTCTTCTAGGCATTGTAAAATGTAAATGCTTTTGTCAAAACGAATTTTGATGCAGATAGCTGTATAACAGTTCCAAAGTAGAATAAGGTGGTCGAGCAATCACCTATATTAATTGTAGATGCTAGATTCCAGTTTTATTCAAAAGCCCAATAAAGATCATGGGCTATTCTTTACTCCGAGAGTGCCCTTGTGTGGTTTTATTTTAGCTGACCATCTGGGCCAAAGTAATTGTCAAATATTCATCTTTAATTCCAATATATTGTCACCTTTACAAGCCAATGAACACAGAGTATTTGGTATTGTGTGGCTGTGTTTGTGTACCAAAATACCCGGACTGGATGTTAATGTTTAATACTGGAAGTTCAATGTTGCTGTCAGGTTCTGGATGTTCAAGAGACCTTTGGTGCCGTAGCTGGTTTTATGATATGAATGATGCTTGACC

Ace file of the UniGene sp_v1.1_unigene1064

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	binding	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	82%
Blast2go	protein	-	-	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9SJ28

Fln msg:

Fln protein: MTDISSLLPTSVLRNLADKLYEKRKNAALEVEGVVRTLTAAGDHEKISAIINVLTHEFALSPQANHRKGGLIGLAAATVGLASEAAQHLEQIVPPVLNSFSDQDSRVRYYACEALYNIAKVARGERRDLGCHSIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALSEFLQEIKNSPSVDYGRMAEILVLRASSTDEFTRLTSITWMNEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKAGPTEGFDIGAVLTIARRELSNECEATRIEALHWMAVLLEKHRKEVISFLDDIFPALLDALSDPSEDVVLLVLEVHACIARDAPHFRHLVVFLVHHFRMDHSLLEKRGTLILRRLCILLDAERVYRELSTILEGEADLDFASVMVQALNLILLNSSELAELRALIKQSLSNPSGRDLFNALYSSWCHSPMATISLCLLAQAYQHASAVIQSLVEEDINVKFLVQLDKLVRLLETPIFTYLRLQLLDPGRYTWLLKTLYGLLMLLPQQSAAFKILRTRLKTVPAYTFSGELPNISANAIRRTASGNPYSQILSHIPSLPSGSQNVEDGDRNTDISNGTNGINFTMRLQQFEHMQRQHRLHCKSQSQMTRQTRQSNSSGTAQEAQRSDEPRRSSLPAADSSRPPSRSSWRS*

Protein Length: 739

Fln nts: AGTTTCATTTCAGTGTTCAACGAGAACAAactCgacAtCgacGCTTCACTCAACAGGCAGCTGCTCTCCAGATCCCTCTCTGCACCACACAGCGCCACTCGACGAAAACTGCCTGAGGACGATCAGTCTGCGTGGAGGGGAAATACGCCAAAATAATCTGTTATTCAAAGACCCGTGGTATCATGGAAAGGCCACAGGGGGGCAGCGTTGAGGAATCAACATCGGCTGATCTGCTCGTATTCTGCGCAGCTAGGGCTTTATCCTCCGGCTTCTAGCGGTCTTCGACGCGGTTTTATATTAATTACTTAATATTTTTGATTTCCAGTTATGCAGTCAATAGCCGAAGTCAGGGTTTGATTCATCCGCGTGATCCTTTTAACGGAGGCCAGGGTTTGATTCGTCCACGTGATCTTCATAAATACCGCGCTTTTGAAAGAGAAAATGAGTTTTGGTACTGTTGTTATCTTCATCGGTGTCCTTGAAGGACAAGGAAGAAGCGTGCGGTGACGGGAGCGACCGTGGACAAGAATTGGGGGAGCAGGTGCTCGGCTTTCCTTGCACATATATGCTGCCCCGAATTGTTATCATTATCAGTATTATTATCTTCTCCCAACGGCGACAGA_-_ATGACGGATATATCTTCTCTTCTTCCTACGTCCGTGCTCCGAAATCTGGCGGACAAGCTCTACGAGAAGCGCAAAAACGCGGCCTTGGAGGTTGAAGGAGTTGTCAGAACATTGACTGCTGCTGGTGACCATGAAAAGATATCGGCAATAATCAATGTGCTGACGCATGAATTTGCCTTGTCTCCTCAAGCAAATCATCGAAAAGGTGGTTTAATAGGGTTGGCTGCGGCAACTGTTGGTTTGGCATCAGAAGCTGCTCAGCATCTGGAGCAAATTGTTCCACCTGTTCTCAACTCTTTTTCTGATCAAGATAGCAGAGTCCGTTATTATGCCTGTGAAGCCCTCTATAACATTGCAAAGGTTGCAAGAGGGGAACGTCGTGACCTTGGCTGTCACTCAATTTTTGATGCGCTATGCAAACTTTCAGCAGATTCAGATGCTAATGTTCAAAGCGCTGCACATCTTTTAGATCGCCTGGTTAAGGACATTGTTACAGAAAGTGACCAGTTCAGCATCGAGGAGTTTATACCACTTTTAAGGGAGCGCATGAATGTTCTCAACCCTTATGTACGCCAATTCTTAGTGGGATGGATTACTGTTTTGGACAGTGTTCCTGACATTGATATGCTGGGCTTCTTGCCAGACTTTCTTGATGGCCTCTTCAATATGCTTAGTGATTCTAGCCATGAGATACGGCAACAGGCAGATTCTGCACTTTCTGAATTCTTACAAGAGATAAAGAACTCTCCGTCGGTAGACTATGGGCGCATGGCTGAGATATTAGTGCTAAGGGCTAGCTCTACAGATGAGTTTACTCGGTTGACATCCATCACATGGATGAATGAATTTGTTAAGCTTGGTGGAGACCAGCTGGTTCCTTATTATGCTGATATTTTGGGAGCAATTTTGCCATGCATCTCTGACAAAGAAGAGAAAATAAGAGTGGTTGCTCGTGAAACCAATGAAGAGCTTCGTGCAATTAAGGCTGGGCCTACTGAGGGATTTGATATTGGAGCAGTGCTTACCATTGCTAGGAGAGAACTGTCAAATGAATGCGAAGCTACAAGGATTGAGGCATTACATTGGATGGCAGTTCTTCTAGAGAAACATCGAAAAGAGGTCATATCATTTCTTGATGATATTTTTCCTGCACTTCTTGATGCTCTCTCAGATCCGTCTGAAGATGTAGTGTTGCTAGTTCTAGAAGTCCATGCTTGCATAGCAAGAGATGCACCACATTTTCGCCATCTTGTTGTCTTCCTTGTGCATCATTTCCGGATGGACCATTCACTTCTTGAGAAGCGGGGAACATTGATACTACGGAGGCTATGCATTCTTTTAGATGCTGAACGAGTGTATCGAGAGTTATCGACTATCTTGGAAGGAGAAGCCGATTTAGATTTTGCCTCAGTCATGGTTCAGGCACTTAATTTAATCCTTCTTAATTCCTCCGAGTTGGCTGAACTTCGAGCACTGATAAAGCAATCTTTGTCCAACCCTTCTGGACGAGATTTATTTAATGCCTTGTACTCTTCCTGGTGTCATTCACCAATGGCAACAATAAGTCTCTGCCTATTGGCTCAGGCATATCAACATGCCAGTGCTGTAATTCAATCACTAGTAGAGGAAGACATTAATGTGAAGTTTCTGGTGCAACTGGACAAGCTTGTTCGTCTACTTGAGACACCAATCTTCACATATTTGAGACTGCAGCTTTTAGATCCTGGACGATATACATGGTTGCTGAAAACTCTTTATGGTCTTTTGATGCTACTTCCTCAGCAAAGTGCTGCATTCAAGATTCTAAGGACACGATTGAAGACAGTTCCAGCATACACCTTCAGTGGTGAACTTCCAAACATTAGTGCTAATGCAATTAGGCGAACGGCTTCAGGAAATCCCTATTCACAAATCTTGTCTCATATTCCTTCCCTTCCAAGTGGCTCACAGAATGTTGAAGATGGAGACAGAAACACAGATATCAGCAATGGAACTAATGGAATCAATTTTACCATGAGGTTGCAGCAGTTTGAGCACATGCAACGCCAGCATCGCTTACATTGCAAATCACAATCACAGATGACCAGGCAGACACGACAATCTAATTCATCAGGCACTGCACAGGAGGCGCAAAGATCAGATGAACCCCGAAGATCATCACTGCCAGCAGCAGATTCAAGTCGACCACCTTCAAGATCGTCATGGCGATCTTAG___TGCTAAATTAAGATTCTAGCTTTCTCCATTTTTTGTGTGCATCATTCGACTCCTGGGGCAAGCTTTTGAGGCACGTGTAATTTTATTGTCTTTCAAGGAGTGTTATTTATGCAGCTGCCCACTGCAAATACTAGATACTATTTACTGCTTTCTTGTGAGAGCATACATCCACCAACATCTGGTTCTCTTCTCTTCTAGGCATTGTAAAATGTAAATGCTTTTGTCAAAACGAATTTTGATGCAGATAGCTGTATAACAGTTCCAAAGTAGAATAAGGTGGTCGAGCAATCACCTATATTAATTGTAGATGCTAGATTCCAGTTTTATTCAAAAGCCCAATAAAGATCATGGGCTATTCTTTACTCCGAGAGTGCCCTTGTGTGGTTTTATTTTAGCTGACCATCTGGGCCAAAGTAATTGTCAAATATTCATCTTTAATTCCAATATATTGTCACCTTTACAAGCCAATGAACACAGAGTATTTGGTATTGTGTGGCTGTGTTTGTGTACCAAAATACCCGGACTGGATGTTAATGTTTAATACTGGAAGTTCAATGTTGCTGTCAGGTTCTGGATGTTCAAGAGACCTTTGGTGCCGTAGCTGGTTTTATGATATGAATGATGCTTGACC

Fln Alignment:

sp_v1.1_unigene1064___MTDISSLLPTSVLRNLADKLYEKRKNAALEVEGVVRTLTAAGDHEKISAIINVLTHEFALSPQANHRKGGLIGLAAATVGLASEAAQHLEQIVPPVLNSFSDQDSRVRYYACEALYNIAKVARGERRDLGCHSIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMXXXXXXXXXXXXNMLSDSSHEIRQQADSALSEFLQEIKNSPSVDYGRMAEILVLRASSTDEFTRLTSITWMNEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKAGPTEGFDIGAVLTIARRELSNECEATRIEALHWMAVLLEKHRKEVISFLDDIFPALLDALSDPSEDVVLLVLEVHACIARDAPXXXXXXXXXXXXXXMDHSLLEKRGTLILRRLCILLDAERVYRELSTILEGEADLDFASVMVQALNLILLNSSELAELRALIKQSLSNPSGRDLFNALYSSWCHSPMATISLCLLAQAYQHASAVIQSLVEEDINVKFLVQLDKLVRLLETPIFTYLRLQLLDPGRYTWXXXXXXXXXXXXPQQSAAFKILRTRLKTVPAYTFSGELPNISANAIRRTASGNPYSQILSHIPSLPSGSQNVEDGDRNTDISNGT--NGINFTMRLQQFEHMQRQHRLHCK
B9SJ28______________MADALSVIPASVLRNLSDKLYEKRKNAALEVEGIVKQLAAAGDHDKISAVINLLTTEFTYSPQANHRKGGLIGLAAATVGLTTEAAQHLEQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFI-VFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALSEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPAEGFVVGPILSIARRQLSSEWEATRIEALHWISNLLNRHRSEVLCFLNDIFDTLLKALSDPSDEVVLLVLEIHACIAKDPLHFRQLVVFLVHNFRIDISLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFASIMVQALNLILLTSSELAELRNLLKQSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYQHASVVIQSLVEEDINVKFLVQLDKLIRLLETPIFAYLRLQLLEPGRYTWLLKALNGLLMLLPQKSAAFKILRTRLKTVPSYSFNGD-------QIKRTPSGNPYSQILHHI---PSGSQTSEDGDVNQDTGNSSFHNGINFSSRLQQFEQMQQQHRMHAK

SNPs (tot: 69)

Position	A %	C %	G %	T %	Probability
325	50		50		1.0
344			66	33	1.0
385			85	14	0.993533
388		85	14		0.993533
389	85		14		0.993533
441	87		12		0.992554
442	87		12		0.992554
443	87		12		0.992554
444			12	87	0.992554
469		87		12	0.992554
578	87	12			0.992554
579	87		12		0.992554
581		12		87	0.992554
584			12	87	0.992554
588	87	12			0.992554
591	87		12		0.992554
592			12	87	0.992554
594	87			12	0.992554
599	14			85	0.993533
664	14	85			0.993533
667	85			14	0.993533
668	85			14	0.993533
671			14	85	0.993533
792	16	16			0.988813
1191		33		66	0.997452
1192	66			33	0.997452
1563	75		25		0.996473
1564	75		25		0.996473
1565	75		25		0.996473
1623		80	20		0.995493
1624			20	80	0.995493
1626	80		20		0.995493
1790	12		87		0.992554
1914	87		12		0.992554
1916		12		87	0.992554
1917		87	12		0.992554
1918	87			12	0.992554
1919		87	12		0.992554
1920	12			87	0.992554
1921		12		87	0.992554
1928	85	14			0.993533
1929	85			14	0.993533
1932		14	85		0.993533
1933			85	14	0.993533
1934		14	85		0.993533
1935	14		85		0.993533
2113	25		75		0.996473
2144		25		75	0.996473
2146		75		25	0.996473
2164	75	25			0.996473
2184		80		20	0.995493
2258	11		88		0.923564
2356	85			14	0.993533
2369		14		85	0.993533
2370		14		85	0.993533
2371	14		85		0.993533
2419		37		62	1.0
2676	90	10			0.90298
2677	10		90		0.90298
2713		90	10		0.90298
2763			88	11	0.923564
2764	88		11		0.923564
2765			11	88	0.923564
2766		88	11		0.923564
2989			90	10	0.90298
3008	30	70			1.0
3099		87		12	0.992554
3309	75			25	0.996473
3311			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain