SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1051

Length: 1924 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene1051 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RB66_RICCO	-	-	7.0e-33	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	dna binding	-	-	0.0	48%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMK0

Fln msg: atg_distance in limit (1-15): atg_distance = 16, W2: There is no M at the beginning,

Fln protein: PINPVQSIGELGWKGSGATSAFRPAEPREITDLQHPVFKLPISDAAGFNLIGKGNRASLDIDLNMAYEKTSEDGVITVHLSSQICEPSTSSGCRDMSGKDFISSIAEPFAPTGPCSPVKSDLDLNRTDDSGENELIKMPLGTSAENFGLTLKTATSASSLGASCVLRDLDLNNGPTFDDSRDEFLPQNFSSSSQPVADLRMKGELFNSSSWFSAGDAFQSLTIPLHFNERTDHQVITTAASASQSTWSSLPGPNLFSDDIYKGKPPFSSDPIISFSNTTSKSYPFTGFPSGSSFPLNSPSFSSGPLSYPESLGPGCFPAVPSQVVPTGSLSSSHVRPYFISPMVASGTESSSTCTWPTPNLDLNTGPEMGDISYREERLVTREPTINCPVSLEQMKAFCHGPASGMSSKRKEPEEAWDVHRSGYEQSIWR*

Protein Length: 432

Fln nts: CCAATAAATCCAGTGCAAAGCATAGGAGAACTAGGCTGGAAAGGATCTGGAGCAACAAGTGCTTTTCGTCCAGCAGAACCTAGAGAAATAACTGATCTGCAGCATCCCGTCTTCAAATTACCAATTTCAGATGCTGCTGGATTTAATTTAATTGGAAAAGGAAACAGAGCTTCATTAGATATTGATCTTAATATGGCTTATGAGAAAACATCTGAAGATGGGGTAATAACAGTGCATTTATCTTCTCAAATATGTGAACCATCAACAAGCTCTGGATGCAGAGATATGAGTGGAAAAGATTTTATATCTTCAATAGCTGAACCTTTTGCTCCTACCGGGCCTTGTAGTCCTGTGAAGTCAGATTTAGACTTGAATCGCACTGATGATAGTGGGGAGAATGAACTGATCAAAATGCCTCTTGGTACCAGTGCTGAAAATTTTGGATTGACTTTGAAGACTGCCACCAGTGCATCGTCCCTTGGAGCTTCATGTGTTCTGAGAGATCTTGATTTGAATAATGGGCCCACTTTTGATGATAGCAGGGATGAATTTCTGCCTCAGAATTTTAGCTCATCTTCCCAGCCTGTAGCTGACCTGAGAATGAAGGGCGAACTATTCAATTCATCATCTTGGTTTTCTGCTGGAGATGCCTTTCAGTCACTTACAATACCTTTGCATTTTAATGAAAGGACAGATCATCAAGTTATCACTACAGCTGCATCTGCATCTCAGTCTACTTGGAGTTCATTACCTGGTCCTAATTTGTTCAGTGATGATATATATAAAGGGAAGCCACCATTCTCTTCAGATCCTATTATTTCCTTTTCAAATACCACTAGTAAGTCATACCCATTTACTGGATTTCCTTCTGGGTCAAGTTTTCCTCTCAACTCTCCTTCTTTTTCAAGTGGTCCACTTTCCTATCCAGAATCATTAGGACCAGGATGTTTTCCTGCAGTTCCCTCTCAGGTAGTCCCCACAGGGTCACTCTCATCATCACATGTGAGACCATACTTTATAAGCCCGATGGTGGCATCTGGGACAGAGAGCAGTAGCACATGCACATGGCCTACACCAAATCTTGATTTAAATACAGGTCCTGAGATGGGTGACATCTCTTACAGGGAAGAGAGGTTAGTCACCAGGGAACCTACAATAAATTGTCCTGTTTCTTTGGAGCAGATGAAAGCATTCTGCCATGGACCAGCTTCAGGTATGTCTTCAAAGAGAAAAGAACCTGAAGAAGCTTGGGATGTGCATAGATCTGGATATGAGCAGTCTATTTGGCGGTAA___AGTTATTTTTGGCTCATGAGGTATTACATGAAATCGGCTGTCAATTGATACGCCAGACAGGCAAATTTTTGTAAACAATGTGCTTGCAAGCGATCAATTTCACTGCCATCCTCGTAATTGACTATTTGAATTCAAATGCCAGCCATTAATCAGTGCATTTTGCATCCTTTAAAGGATTTGCTGACCTGTAATACTTAACATTCTGGCACTTAGAAAAGTGACAATGTGAAAGCTTTGTCCACCAGAATTGTGTAAATCTAAACATGCACTCTGTGCTGTTTCTTTCTATGGAGTTCCATGCAATGCTAACTCTGGTTTGTGATTGCTGTAAATTTTGGAGTGTGAAAAGATGATGGTTTGTTCGTTCCTTGTCGTCTTTTAAAGGTACCTGCATTTTCCAATGACCCATTGAGAACATAGGGTTCATAAATTTAAGCAAAGCAGTGTATCTGCCTTATAGTTACAAGTAAATCTGTACAGATGTATTTGCTTCTAAATTTAGTACATATCTATATGTAGAGCACGGAACTTGGGAACAGTATTATGATGTTATCCTTTTTCTTATAACAATGTTCCGGCTTGTTTTCGTCATGCTTATGCATGATGTGGATGAGAATATATTCTAGCTTCC

Fln Alignment:

sp_v1.1_unigene1051___PINPVQSIGELGWKGSGATSAFRPAEPREITDLQHPVFKLPISDAAGFNLIGKGNRASLDIDLNMAYEKTSEDGVITVHLSSQICEPSTSSGCRDMSGKDFISSIAEPFAPTGPCSPVKSDLDLNRTDDSGENELIKMPLGTSAENFGLTLKTATSASSLGASCVLRDLDLNNGPTFDDSRDEFLPQNFSSSSQPVADLRMKGELFNSSSWFSAGDAFQSLTIPLHFNERTDHQVIXXXXXXXXXXXXSLPGPNLFSDDIYKGKXXXXXXXXXXXSNTTSKSYPFTXXXXXXXXXXXXXXXXXXXXSYPESLGPGCFPAVPSQVVPTGSLSSSHVRPYFISPMVASGTESSSTCTWPTPNLDLNTGPEMGDISYREERLVTREPTINCPVSLEQMKAFCHGPASGMSSKRKEPEEAWDVHRSGYEQSIWR
B8LMK0______________PVNPVQSIGELGWKGSAATSAFRPAEPREITELQRHVSKIPISDAAAFNSIGKGNRDSLDIDLNVAYERTSEDGVITVHLSSQTCEPSTSSGCRDMSGQDFISSIAEPFAPTGACSPVKSDLDLNRIDDSGENELTKMPLGTSAENFGLTLKSPTSASSLGASCVLRGFDLNDGPTFDDGEDELLPQNFSSSSQPVPDLRMKGELFNSSSWFSPGNAFQALTMPLHFNARTDHQVITTAASAPQSNRSSLSGPNFFSGDIYKGQTSFSPDPIISFSNTMSTSYPFTGFPFGSSFPLNSASFSGGSLSYPESLGPGCFPAVPSQTVTTGSLSSSHVRPYLISPMVPSGTESST--TWPTLNLDLNTGPEMGDISYREERLVTRQPSINDPVSLEQMRAFCHGSASGMASKRKEPEEGWDVHRSGYKQSMWR

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
1205	25		75		0.996473
1568	88	11			0.923564
1569	88	11			0.923564
1680	83	16			0.994512
1681		16		83	0.994512
1702		12		87	0.992554
1703		12	87		0.992554
1704	12			87	0.992554
1813	50			50	1.0
1819	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain