SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1041

Length: 2030 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene1041
ATTATGGGGACTGCACTCAGTCCAGAGCTTTGGCTTGAAGGCATAGTGGTCTTAGTTTGTGGGTCTACCCTTTTGACAATGAGGGCATTTTGTGATGTTTCCTTGGTGTTTGGGTTGTTTTTTCTGTTCTGGGTAGGGCATGCTAATGCAAATTATACTATAGAGAGCTATCAGCACTCCAAGCACCCAAAGCCCAATTTCCATGGAGCATCCCATAACTATAGAGATGCTCTCTCCAAAGCCATACTTTTCTATGAAGGCCAGCGCTCAGGCAAGCTCTCTGGCAGTCAACGTATGACTTGGAGAAGAGACTCTGCTCTGTCAGATGGGTTTTCTCAGCATGTGGACTTGGTTGGAGGATACTATGATGCAGGAGACAACGTTAAATTTGGATTTCCAATGGCATTCACCACAACGATGCTGTCATGGAGTGTTTTGGAATTCGGTGGGTTCATGGGCGGTGAGCTAGCCAACTCAAAGGATGCCATTCGCTGGGCCACGGATTACCTGCTGAAAGCAACTGCACATCCAGGCACCATATATGTCCAGGTAGGGGATCCCAACACTGATCACAAATGCTGGGAAAGGCCAGAAGATATGGACACAGCTCGCACTGTTTATAAAATTGACAGCCAACATCCTGGTTCAGATGTTGCTGCTGAAACAGCTGCAGCACTTGCTGCTGCATCACTTGTATTTCGCAAATCTGATCCTCAATATTCAAAGAGACTTATTCATACTGCCATGAGGGTATTTGATTTTGCTGATAAGCACAGAGGAGCTTATAGTGACTCCCTTAGATCTGGAGTCTGTCCATTCTATTGCTCATACTCTGGATATGAGGATGAACTACTCTGGGGAGCAGCTTGGCTGCATAAGGCAACACGCAATCCAACTTATCTAAACTATATTCAATCAAAAGGCCAGTCATTAGGAGCTGATGAATCAGACAATATATTTGGGTGGGACAATAAACATGCAGGTGCTCGAGTCCTCCTATCAAAGGAGTTCTTGTTACGAAACGTGAAGTCCCTTCATGACTACAAAGGACATGCTGACAATTATATCTGCTCTCTTCTCCCTGGAGTATCTTATTCACAAGCTAAATATACTCCAGGAGGGCTTCTTTACACAATGTCTGATAGCAATTTGCAATATGTTACATCTTCTTCCTTCTTGCTCTTCACTTATGCTAAATACCTGAGCTCCTCCAAACATGTAGTAACTTGTGGGTCGATGACTTTTAGTCCAAAGAGGCTAAGAACTATTGCAAAACGCCAGGTTGATTACATATTGGGGGATAATCCTCTCAAGATGTCATACATGGTTGGCTATGGTTCCCACTATCCAGAACGTATTCATCACAGAGCCTCTTCTCTTCCCTGCAAAGCAAATCATCCTCAGCCCATTCCATGCAACGCAGGCTTCCAATCTCTGTACAGCAATGCACCCAATCCCAACGTCTTGGTGGGAGCTGTGGTGGGAGGCCCGGACAGCATGGATCGATTTCCGGATGACCGAAATGATTACGAGCAATCAGAACCTTCTACATATATCAATGCACCTTTCGTGGGCTCCCTTGCTTATTTGGCCCATTCTACCATGTCCTGAAGTATCTTGCCCTCTGTACCTCCTTCTGTAAACCAGACAAGGAGGATGGATGGAACTATCTTCATGTTCAGCTAATTGGTTTCAATTCTGTGTTATTGTTGTGAAGTAACTGTATATCTATAGTAATGTTTTAAAAGAAGCATTCTAAGAAATCCAGCCTATCTCCTGAAGTATCTTACCCTCTGGTCCTCCTTATCTAAACCAGAGGAGGAGGATGATAGATGGAAGCACTATCTTCATGTTGTTCAGCTAGTTGGTTTCAACTCTGTATTGTAGTGAAGTAACTGTATATCATGGTAGTGCCCCTGGAACAAGTGTTTTAAGCGGGCCACAGCATAGTCTGCCATTGTATTTATTGCTAATTAATGAAATGACCAAGTCAAGACTTTGCTCGCTCACTTCGCAGTGAGTGACAGGCC

Ace file of the UniGene sp_v1.1_unigene1041

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Endo-beta-1,4-glucanase n=1 Tax=Pinus radiata RepID=O64401_PINRA	-	-	93%
FL-Next	tr=Endo-beta-1,4-glucanase; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	98%
Blast2go	endo-beta- -glucanase	-	-	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to nematode	GO:0009624	Biological Process	0.0	84%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	0.0	84%

Source	InterPros	Term	Type	Identity
Blast2go	Glycoside hydrolase, family 9	IPR001701	-	84%
Blast2go	Six-hairpin glycosidase-like	IPR008928	-	84%
Blast2go	Six-hairpin glycosidase	IPR012341	-	84%
Blast2go	Glycoside hydrolase, family 9, active site	IPR018221	-	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: O64401

Fln msg:

Fln protein: MGTALSPELWLEGIVVLVCGSTLLTMRAFCDVSLVFGLFFLFWVGHANANYTIESYQHSKHPKPNFHGASHNYRDALSKAILFYEGQRSGKLSGSQRMTWRRDSALSDGFSQHVDLVGGYYDAGDNVKFGFPMAFTTTMLSWSVLEFGGFMGGELANSKDAIRWATDYLLKATAHPGTIYVQVGDPNTDHKCWERPEDMDTARTVYKIDSQHPGSDVAAETAAALAAASLVFRKSDPQYSKRLIHTAMRVFDFADKHRGAYSDSLRSGVCPFYCSYSGYEDELLWGAAWLHKATRNPTYLNYIQSKGQSLGADESDNIFGWDNKHAGARVLLSKEFLLRNVKSLHDYKGHADNYICSLLPGVSYSQAKYTPGGLLYTMSDSNLQYVTSSSFLLFTYAKYLSSSKHVVTCGSMTFSPKRLRTIAKRQVDYILGDNPLKMSYMVGYGSHYPERIHHRASSLPCKANHPQPIPCNAGFQSLYSNAPNPNVLVGAVVGGPDSMDRFPDDRNDYEQSEPSTYINAPFVGSLAYLAHSTMS*

Protein Length: 537

Fln nts: ATT_-_ATGGGGACTGCACTCAGTCCAGAGCTTTGGCTTGAAGGCATAGTGGTCTTAGTTTGTGGGTCTACCCTTTTGACAATGAGGGCATTTTGTGATGTTTCCTTGGTGTTTGGGTTGTTTTTTCTGTTCTGGGTAGGGCATGCTAATGCAAATTATACTATAGAGAGCTATCAGCACTCCAAGCACCCAAAGCCCAATTTCCATGGAGCATCCCATAACTATAGAGATGCTCTCTCCAAAGCCATACTTTTCTATGAAGGCCAGCGCTCAGGCAAGCTCTCTGGCAGTCAACGTATGACTTGGAGAAGAGACTCTGCTCTGTCAGATGGGTTTTCTCAGCATGTGGACTTGGTTGGAGGATACTATGATGCAGGAGACAACGTTAAATTTGGATTTCCAATGGCATTCACCACAACGATGCTGTCATGGAGTGTTTTGGAATTCGGTGGGTTCATGGGCGGTGAGCTAGCCAACTCAAAGGATGCCATTCGCTGGGCCACGGATTACCTGCTGAAAGCAACTGCACATCCAGGCACCATATATGTCCAGGTAGGGGATCCCAACACTGATCACAAATGCTGGGAAAGGCCAGAAGATATGGACACAGCTCGCACTGTTTATAAAATTGACAGCCAACATCCTGGTTCAGATGTTGCTGCTGAAACAGCTGCAGCACTTGCTGCTGCATCACTTGTATTTCGCAAATCTGATCCTCAATATTCAAAGAGACTTATTCATACTGCCATGAGGGTATTTGATTTTGCTGATAAGCACAGAGGAGCTTATAGTGACTCCCTTAGATCTGGAGTCTGTCCATTCTATTGCTCATACTCTGGATATGAGGATGAACTACTCTGGGGAGCAGCTTGGCTGCATAAGGCAACACGCAATCCAACTTATCTAAACTATATTCAATCAAAAGGCCAGTCATTAGGAGCTGATGAATCAGACAATATATTTGGGTGGGACAATAAACATGCAGGTGCTCGAGTCCTCCTATCAAAGGAGTTCTTGTTACGAAACGTGAAGTCCCTTCATGACTACAAAGGACATGCTGACAATTATATCTGCTCTCTTCTCCCTGGAGTATCTTATTCACAAGCTAAATATACTCCAGGAGGGCTTCTTTACACAATGTCTGATAGCAATTTGCAATATGTTACATCTTCTTCCTTCTTGCTCTTCACTTATGCTAAATACCTGAGCTCCTCCAAACATGTAGTAACTTGTGGGTCGATGACTTTTAGTCCAAAGAGGCTAAGAACTATTGCAAAACGCCAGGTTGATTACATATTGGGGGATAATCCTCTCAAGATGTCATACATGGTTGGCTATGGTTCCCACTATCCAGAACGTATTCATCACAGAGCCTCTTCTCTTCCCTGCAAAGCAAATCATCCTCAGCCCATTCCATGCAACGCAGGCTTCCAATCTCTGTACAGCAATGCACCCAATCCCAACGTCTTGGTGGGAGCTGTGGTGGGAGGCCCGGACAGCATGGATCGATTTCCGGATGACCGAAATGATTACGAGCAATCAGAACCTTCTACATATATCAATGCACCTTTCGTGGGCTCCCTTGCTTATTTGGCCCATTCTACCATGTCCTGA___AGTATCTTGCCCTCTGTACCTCCTTCTGTAAACCAGACAAGGAGGATGGATGGAACTATCTTCATGTTCAGCTAATTGGTTTCAATTCTGTGTTATTGTTGTGAAGTAACTGTATATCTATAGTAATGTTTTAAAAGAAGCATTCTAAGAAATCCAGCCTATCTCCTGAAGTATCTTACCCTCTGGTCCTCCTTATCTAAACCAGAGGAGGAGGATGATAGATGGAAGCACTATCTTCATGTTGTTCAGCTAGTTGGTTTCAACTCTGTATTGTAGTGAAGTAACTGTATATCATGGTAGTGCCCCTGGAACAAGTGTTTTAAGCGGGCCACAGCATAGTCTGCCATTGTATTTATTGCTAATTAATGAAATGACCAAGTCAAGACTTTGCTCGCTCACTTCGCAGTGAGTGACAGGCC

Fln Alignment:

sp_v1.1_unigene1041___MRAFCDVSXXXXXXXXXXXXHANANYTIESYQHSKHPKPNFHGASHNYRDALSKAILFYEGQRSGKLSGSQRMTWRRDSALSDGFSQHVDLVGGYYDAGDNVKFGFPMAFTTTMLSWSVLEFGGFMGGELANSKDAIRWATDYLLKATAHPGTIYVQVGDPNTDHKCWERPEDMDTARTVYKIDSQHPGSDVXXXXXXXXXXXSLVFRKSDPQYSKRLIHTAMRVFDFADKHRGAYSDSLRSGVCPFYCSYSGYEDELLWGAAWLHKATRNPTYLNYIQSKGQSLGADESDNIFGWDNKHAGARVLLSKEFLLRNVKSLHDYKGHADNYICSLLPGVSYSQAKYTPGGLLYTMSDSNLQYVTSSSFLLFTYAKYLSSSKHVVTCGSMTFSPKRLRTIAKRQVDYILGDNPLKMSYMVGYGSHYPERIHHRASSLPCKANHPQPIPCNAGFQSLYSNAPNPNVLVGAVVGGPDSMDRFPDDRNDYEQSEPSTYINAPFVGSLAYLAHSTM
O64401______________MRAFCDVSLVFGLFFLFWVGHANANYTIESYQHSKHPKPNFHGASHNYRDALSKAILFYEGQRSGKLPGSQRMTWRRDSALSDGFSQHVDLVGGYYDAGDNVKFGFPMAFTTTMLSWSVLEFGGFMGGELANSKDAIRWATDYLLKATAHPGTIYVQVGDPNTDHKCWERPEDMDTARTVYKIDSQHPGSDVAAETAAALAAASLVFRKSDPQYSKRLIHTAMRVFDFADKHRGAYSDSLRSCVCPFYCSYSGYEDELLWGAAWLHKATRNPTYLNYIQSKGQSLGADESDNIFGWDNKHAGARVLLSKEFLLRNVKSLHDYKGHADNYICSLLPGVSYSQAKYTPGGLLYTLSDSNLQYVTSSSFLLFTYAKYLSSSKHVVTCGSMTFSPKRLRTIAKRQVDYILGDNPLKMSYMVGYGSHYPERIHHRGSSLPSKGNHPQAIPCNAGFQSLYSNAPNPNILVGAVVGGPDSMDRFPDDRNDYEQSEPTTYINAPFVGSLAYLAHSTM

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
4	57		42		1.0
5			42	57	1.0
9		28	57	14	1.0
48		12	87		0.992554
52		12		87	0.992554
53			12	87	0.992554
55		12	87		0.992554
56		12		87	0.992554
60			12	87	0.992554
61		12	87		0.992554
62			87	12	0.992554
70	12	87			0.992554
210	35			64	1.0
1919			25	75	1.0
2007		70		20	0.999998
2009	16	66		16	0.988813
2011		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain