SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1039

Length: 1730 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1039

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	1.0e-26	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	unknown [Picea sitchensis]	-	-	2.09002e-26	94%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMZ5

Fln msg:

Fln protein: MDSQDLNKAPQPCVKASMSLGSEQYVFTGFEHDGLLSDRLVKLKEQCMSTFKDHLIRHNAPTDVPDEVRESSSEEEDSKPSQLPKRSKKLK*

Protein Length: 93

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTGAAGTAAATTTCTAGAGGATAACCATTTTGAGGATCGATTTGTGAAGGCCACGTGTTTCCTTGGGTGTTGGTATTTGTTACACCTCCTGAGCAACTATTGGAGGAACTTTTCTCAATTTTGAACAGGAGTGTGCAAAATCTGAAGCCATTCTTACAGTTGAAGAACCGCGAGAATCTCTCCCAGTTTTGTTGGGTAGAACAAGTTCAGGGGATCTGGGGCGCGAGTTTCATCCTTGTGGAGGAGTTTGTGTCTCTGCAGGTGCCTGTGCGAGTATCTATTGCGCCCTGACCAAAACTGTCAGCCCACTTTTTGTTTGCTGGTGCGTTGAATAGGACGCTAAAACCGATACCAGTGCAGAACAGACTTCAAAAAGAGGTTAACTCTCACCCATTGTTGACAGAGCAGGCCCAAGACGCCTGATGCTATTGACAACATAATGTTGCACGTTGGTGGTGAAATTGCGGAAGCCGAGCAGTACATTGCACCGTAATAAAGGTTTGCTTGAAAATGTTCGAAAGGAACTGAGTTTGAATCGGAGGAGCAACTAATATATCCAGAATTCCGGATTTGAAGGCACTCCTTTTTCCTACCTGCAGCAGCTCGTTGAAAGGAGACAACTCGTTATGATGTTGGTTGTGTTAATGTCCCTTTAATCTGAGCGTTTTCTGGGCTTGAGACATTGTATTATTTTTCTCTATGTTGAGAGAGCAATATAGCAAGGGCCATATCTGCTTCTGAAGGCTGAGTTTTCTACTGGGGACGAACGCGGAAATACTGGACTATTTCACTCCAGAAACTGATCTCAACCAACTGCATCGACACAGCATATTTGCCCACTCACATATAAGCAATAGCTGTGTGCTACTACTCTTGATGCA_-_ATGGACAGTCAGGATTTAAATAAGGCACCCCAACCGTGTGTTAAAGCTAGTATGTCACTTGGCTCAGAGCAGTATGTTTTCACTGGTTTTGAGCATGATGGATTGCTTTCAGATAGGCTTGTTAAACTCAAAGAACAGTGCATGAGTACATTTAAGGATCATCTGATTCGTCATAATGCTCCAACAGATGTACCTGATGAAGTCCGAGAGAGCTCATCTGAAGAAGAAGATTCAAAGCCCAGTCAACTTCCTAAAAGATCAAAGAAGCTCAAATAG___AATTGTCGTAATAGTCTTAATAGTATCAGAGTTTTCCTTGTCTCTTGTTTATGGATAGCTGTCAAAGTTACAGATACAGGCTGACTTTACTTTGTTGCAATTTCGGTTTCTTTCCTTTCCAGAACAGAAAGACTATAAACTTGGTTCCTTAGTCTTTTTTGGTTACTTCATAGCCTTTTCTCAAATTCATTCTATCGGATAGCATATTTAGTTTTTAATATGCACATTGTCCTTGTGATGGCAACAAGTTCCCAACATTGTGCAAAAGATATTTGGTGACACATTTAAAATATAAATCACACACCAGAAATTTCATGTTGATTTGCATGGTAGATGAATTACTTCAGCATGACTCTTGCCAAGATGAATGAGAAAGTAATGCATTGCATTAAAAAGGGCAGAGCTAGTTGCATACATTGCAAGAGAATTGGTGTAGAGTTCAGCTTGGGCCATAACGAATGGCAGTATCGTGAAATTGTGTTCTATGCTGCAGTGCTCATGCAGTTTATGGATTCTCTTTATAATGATTTAGTACAATAAATAATGGAT

Fln Alignment:

sp_v1.1_unigene1039___MDSQDLNKAPQPCVKASMSLGSEQYVFTGFEHDGLLSDRLVKLKEQCMSTFKDHLIRHNAPTXXXXXXXXXXXXXXXXXXXQLPKRSKKLK
A9NMZ5______________MDGQGLNKAPQPCVKASLSLGSEQYDFTGFEHDGLLSDRLVKLKEQCMTTFKDYLVRHNVPADVPDEVQQSSSEEEDSKPSKLPKRSKKLK

SNPs (tot: 49)

Position	A %	C %	G %	T %	Probability
431	85	14			0.993533
605		20		80	0.995493
717	60			40	1.0
718	40			60	1.0
735	75		25		0.996473
743	25		75		0.996473
761			75	25	0.996473
827		33		66	0.997452
851	33		66		1.0
959		20		80	0.995493
987		16		83	0.994512
989		83		16	0.994512
1035		83		16	0.994512
1050	88		11		0.999952
1053	88	11			0.999952
1058	88	11			0.999952
1061			11	88	0.999952
1062	88		11		0.999952
1063	88	11			0.999952
1064			88	11	0.999952
1073		11	88		0.999952
1286	10			90	0.90298
1287		10		90	0.90298
1288		80		20	0.999996
1289	10		90		0.90298
1349	25			75	0.996473
1354	83	16			0.994512
1386	80		20		0.995493
1414			57	42	1.0
1425		62	37		1.0
1426		37		62	1.0
1445		62		37	1.0
1452	57		42		1.0
1459			42	57	1.0
1505	66	33			1.0
1530	70			30	1.0
1577	62		37		1.0
1586	62	37			1.0
1593			37	62	1.0
1639	66		33		1.0
1646			66	33	1.0
1650		33		66	1.0
1654			66	33	1.0
1686		60	40		1.0
1688			75	25	0.996473
1690			33	66	0.997452
1691	33			66	0.997452
1693	33			66	0.997452
1694	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain