SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1015

Length: 2016 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene1015
ATTGGGGTCTGTTAAAACGTCGTGACCTTGGCTGTCACTCAATTGTCTTTACTCAGGATTTGGAACACGAGGCCTTTGAAGTCGGGGAAGGCAAGATTCGGAGATAAATGCGAGTGCTTTAATGCAAATCCTGCAAAGATTTGATAGATCTATTTTCCGGTGTCCGACCGTCTCTCTCCCTTCCCCATTTTCATTCTCTCTGGGCAGGGTAAGGGCATACAACAATACACAGGAAGCAGAGAAAACAATGGCCTCTCATGCCAAGCTTGCCAGGCGGCTATTGGAAACAGACACGCCTGTCATGATACAGATGCAAGAATTGCTCCGCAGTGTCAAAGATTGCATGTCACTTGCCCAGGGTGTAGTTCATTGGCCACCACCAGACCAAGCCCTAGAAAAAACTAGGATGCCATCTGGCAACCTTCAACTAGCAATTATGGTCCAGATGAAGGACTACCAGACCTTCGAGAGGCGCTGGTTGAAAAGTTAAGGCGGGAAAATAAGTTATGCAAATCTTCAGTCATGGTCACTGCTGGTGCGAACCAGGCATTTGTGAACCTTGTGCTTGCATTATGCGATGCAGGCGATTCAGTGGTCATGTTTGCACCATATTATTTCAATGCATACATGTCCTTCCAAATGACAGGAATCACAAACATATTGGTTGGCCCTTGTGATCCCGAGACACTTCAGCCTAATGCAGATTGGCTGGAAGAAACACTGTCGAAGGAGAAAAATAAAACAATACCAAAACTTGTGACCATTGTAAATCCAGGCAACCCATCTGGATCATATGTTCCCGATCCTCTTCTGCGGAGAATATCTGAACTATGCAAAAATGTGGGGTGTTGGCTTGTCGTAGATAATACTTACGAGTATTTTATGTATGATGGGTTGAAACATACTTGTGTAGAGGCTCCGCACGTTATCAATGTATTCTCCTTTTCTAAAGCTTACGGTATGATGGGCTGGCGAGTTGGATATATAGCATATCCTTCTGAAGTCGAGGGCCTTGCAGCACAACTGCTCAAAACACAAGACAACATCCCAATATGTGCTTCAATCATTGGACAAAAGCTTGCTCTATATTCACTGGAGCTTGGCGCTGAATGGGTGAAGGAAAGGGTTCAAAAATTAACAAAAAACAGAGATATAATTTTGGATGCATTGTCACCTCTCGGTCCAAATGCTGTAAGGGGTGGACAAGGAGCAATTTATCTCTGGGCAAAGTTACCAAATGGTGCTTCCAATGATGTTGAGGTTGTTCAGTGGCTTGCAAAGAGACATGGAGTTATTGTTATCCCTGGTAGTGCTAGTGGAGGACCAGGGTATGTTCGTGTTTCGTTTGGTGGCCTTGTTGAGGATGTCTGCAGTGTTGCTGCAGCTAGACTTAGAAAGGGCATGGAGGAGCTTGTATCCAAGGGAATGCTTTCATCTTAATTTTCCAGGAGTAGAAAGATCTCAACAGCATTATTCAAGATGTGTATCTTGTAATGCAAACTGTTAAGGTCATTTACTTCAATTTCTGGGTTATTGGGCAATATACAAGATGCCAGCCATTATAAATATTAAATACCAATATATAAGTTTGACTCTGGATTCTGATTCTGTGAGTTTTTTTTGAGTTTTACAAGGATGGAATTACTTGACTCAGAGAATCAACTTCCATAGACATGAAAGTGATCATACTAAATTTTGATTCACTTATCATTTTCATTGTGGTGTGATTGGGTCCTAATTCAATTTCTGCAGGATGTATTTGATTTTAATATTTATCCTATAATCTTACAAAGTGACTTTTCAAGGGAGTTGAATCTACACGTGTAAGCTTTGAAGCAATAAATAATTGTTGTTGAGCCTATTTATATAAGCTGGCGTGCTTTAATGATTTTATCCTATGATCACGGGAACTACTGTGTCCTTTGCAAGACAGTTGGCTGTACATGTGCAAGCTTTGAAGCAATAAGTAATTGTTATTGAGACCGAAATATATAAGATGGTGTGCTTTAATATAAG

Ace file of the UniGene sp_v1.1_unigene1015

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	aspartate aminotransferase, putative (EC:2.6.1.1)	-	-	73%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	56%
Blast2go	transaminase transferring nitrogenous groups	-	-	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	0.0	80%

Source	InterPros	Term	Type	Identity
Blast2go	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	80%
Blast2go	Aminotransferase, class I/classII	IPR004839	-	80%
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	80%
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	80%
Blast2go	Pyridoxal phosphate-dependent transferase, major domain	IPR015424	-	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: A9PFW6

Fln msg: Overlapping hits, possible frame ERROR between 406 and 406, your sequence is longer than subject: 440 - 394

Fln protein: MQILQRFDRSIFRCPTVSLPSPFSFSLGRVRAYNNTQEAEKTMASHAKLARRLLETDTPVMIQMQELLRSVKDCMSLAQGVVHWPPPDQALEKTxxAIWQPSTSNYGPDEGLPDLREALVEKLRRENKLCKSSVMVTAGANQAFVNLVLALCDAGDSVVMFAPYYFNAYMSFQMTGITNILVGPCDPETLQPNADWLEETLSKEKNKTIPKLVTIVNPGNPSGSYVPDPLLRRISELCKNVGCWLVVDNTYEYFMYDGLKHTCVEAPHVINVFSFSKAYGMMGWRVGYIAYPSEVEGLAAQLLKTQDNIPICASIIGQKLALYSLELGAEWVKERVQKLTKNRDIILDALSPLGPNAVRGGQGAIYLWAKLPNGASNDVEVVQWLAKRHGVIVIPGSASGGPGYVRVSFGGLVEDVCSVAAARLRKGMEELVSKGMLSS*

Protein Length: 441

Fln nts: ATTGGGGTCTGTTAAAACGTCGTGACCTTGGCTGTCACTCAATTGTCTTTACTCAGGATTTGGAACACGAGGCCTTTGAAGTCGGGGAAGGCAAGATTCGGAGATAAATGCGAGTGCTTTAATGCAAATCCTGCAAAGATTTGATAGATCTATTTTCCGGTGTCCGACCGTCTCTCTCCCTTCCCCATTTTCATTCTCTCTGGGCAGGGTAAGGGCATACAACAATACACAGGAAGCAGAGAAAACAATGGCCTCTCATGCCAAGCTTGCCAGGCGGCTATTGGAAACAGACACGCCTGTCATGATACAGATGCAAGAATTGCTCCGCAGTGTCAAAGATTGCATGTCACTTGCCCAGGGTGTAGTTCATTGGCCACCACCAGACCAAGCCCTAGAAAAAACTAGG_-_ATGCCATCTGGCAACCTTCAACTAGCAATTATGGTCCAGATGAAGGACTACCAGACCTTCGAGAGGCGCTGGTTGAAAAGTTAAGGCGGGAAAATAAGTTATGCAAATCTTCAGTCATGGTCACTGCTGGTGCGAACCAGGCATTTGTGAACCTTGTGCTTGCATTATGCGATGCAGGCGATTCAGTGGTCATGTTTGCACCATATTATTTCAATGCATACATGTCCTTCCAAATGACAGGAATCACAAACATATTGGTTGGCCCTTGTGATCCCGAGACACTTCAGCCTAATGCAGATTGGCTGGAAGAAACACTGTCGAAGGAGAAAAATAAAACAATACCAAAACTTGTGACCATTGTAAATCCAGGCAACCCATCTGGATCATATGTTCCCGATCCTCTTCTGCGGAGAATATCTGAACTATGCAAAAATGTGGGGTGTTGGCTTGTCGTAGATAATACTTACGAGTATTTTATGTATGATGGGTTGAAACATACTTGTGTAGAGGCTCCGCACGTTATCAATGTATTCTCCTTTTCTAAAGCTTACGGTATGATGGGCTGGCGAGTTGGATATATAGCATATCCTTCTGAAGTCGAGGGCCTTGCAGCACAACTGCTCAAAACACAAGACAACATCCCAATATGTGCTTCAATCATTGGACAAAAGCTTGCTCTATATTCACTGGAGCTTGGCGCTGAATGGGTGAAGGAAAGGGTTCAAAAATTAACAAAAAACAGAGATATAATTTTGGATGCATTGTCACCTCTCGGTCCAAATGCTGTAAGGGGTGGACAAGGAGCAATTTATCTCTGGGCAAAGTTACCAAATGGTGCTTCCAATGATGTTGAGGTTGTTCAGTGGCTTGCAAAGAGACATGGAGTTATTGTTATCCCTGGTAGTGCTAGTGGAGGACCAGGGTATGTTCGTGTTTCGTTTGGTGGCCTTGTTGAGGATGTCTGCAGTGTTGCTGCAGCTAGACTTAGAAAGGGCATGGAGGAGCTTGTATCCAAGGGAATGCTTTCATCTTAATTTTCCAGGAGTAGAAAGATCTCAACAGCATTATTCAAGATGTGTATCTTGTAATGCAAACTGTTAAGGTCATTTACTTCAATTTCTGGGTTATTGGGCAATATACAAGATGCCAGCCATTATAAATATTAAATACCAATATATAAGTTTGACTCTGGATTCTGATTCTGTGAGTTTTTTTTGAGTTTTACAAGGATGGAATTACTTGACTCAGAGAATCAACTTCCATAGACATGAAAGTGATCATACTAAATTTTGATTCACTTATCATTTTCATTGTGGTGTGATTGGGTCCTAATTCAATTTCTGCAGGATGTATTTGATTTTAATATTTATCCTATAATCTTACAAAGTGACTTTTCAAGGGAGTTGAATCTACACGTGTAAGCTTTGAAGCAATAAATAATTGTTGTTGAGCCTATTTATATAAGCTGGCGTGCTTTAATGATTTTATCCTATGATCACGGGAACTACTGTGTCCTTTGCAAGACAGTTGGCTGTACATGTGCAAGCTTTGAAGCAATAAGTAATTGTTATTGAGACCGAAATATATAAGATGGTGTGCTTTAATATAAG

Fln Alignment:

sp_v1.1_unigene1015___MASHAKLARRLLETDTPVMIQMQELLRSVKDCMSLAQGVVHWPPPDQALEKTRDAIWQPSTSNYGPDEGLPDLREALVEKLRRENKLCKSSVMVTAGANQAFVNLVLALCDAGDSVVMFAPYYFNAYMSFQMTGITNILVGPCDPETLQPNADWLEETLSKEKNKTIPKLVTIVNPGNPSGSYVPDPLLRRISELCKNVGCWLVVDNTYEYFMYDGLKHTCVEAPHVINVFSFSKAYGMMGWRVGYIAYPSEVEGLAAQLLKTQDNIPICASIIGQKLALYSLELGAEWVKERVQKLTKNRDIILDALSPLGPNAVRGGQGAIYLWAKLPNGASNDVEVVQWLAKRHGVIVIPGSASGGPGYVRVSFGGLVEDVCSVAAARLRKGMEELVSKGML
A9PFW6______________MGSYVKLAKRAVETEMPIMVQIQELVRGAKNAVSLAQGVVYWQPPKQALNKVKELVWEPSISRYGADEGIPELREALTQKLQKENKLVKSSVMVTAGANQAFVNLVLALCDAGDSVVMFAPYYFNAYMSFQMTGVTNILVGPGNPETLHPDADWLERTLSEAK--PVPKVVTVVNPGNPSGTYIPDPLLKRISDLCREAGSWLIVDNTYEYFMYDGLKHSCIEGDHVVNIFSFSKAYGMMGWRVGYIAYPSGVEGFQTQLLKIQDNIPICASILSQHLALYSLEMGPEWVTEQVKDLVKNRDIILEALSPLGEGAVKGGEGAIYLWAKLPEQYVDDDKVVRWLATRHGVIVIPGGACGCPGHLRISFGGLTENDCKAAAERLRRGLEDLVSNGIV

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
760	88		11		0.923564
902		11		88	0.923564
1993			50	50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain