SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene997

Length: 2267 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene997
CGTCGTGACCTTGGCTGTCACTCAATTTTAATCATTCTCTATTTAAGTAAATAGTTGTGATGGGCACGGGCATAAGAGTCTGTCTATGAATCTGATCGACTCATCACAGCACAGCCGACCCAACCAACCTGATATATTTACATGGATATTGGTAGACCAGGAGTCTTCTTCGGTGGAAACATAGATAATTTCTGAGAAGATCATCTGCATTGTGTTTGCTTCCCCATCATTAGAAAAAAATCTCCAATTCGGAGTTGCAGGGTTCGAACTTGAGACCATCTATCGTCATGTATCAAATCTTCGTCAAGGGTTTGGATGGCAGAACAAAATGCCTGCAGGTGTCTGCACCCCACCTCGCGGTCTCGGATCTGAAGGACAGGCTCTTCGATCTGATTAAAGTTCCTCCGCAGTTTCAGAGGCTCGTTTCGGGCACCCGCCAGATCGCCGATGACGCCCTTCTGGTCGCCGCCCGCGACGGCCTGTATCCACAAGTCCATCTCCTCCTCCGCCTGAGAGGGGGCAAAGGGGGTTTCGGCTCTCTTCTGAGGGGCGCCGCCACCAAGGCCGGCCAGAAGAAGACCAGCAATTTTGATGCTTGCCGCGACATGAGCGGAAGGAGGCTCCGCCACGTGAACGCCGAGAAGAAGCTGGAGGAGTGGAAGGCGGAGGCGCAGGAGAGGCAGCTCGAGAAGATTGCGGAGGATTACCTGAAGAAGCAGGCGAAGATTATGAAAAAGAGTGACCCTCGCTCCGATGAGGGCGCCAGGGATGTGGAGAAGTACAGGACCGAAGCTTCCAGGGCCATGGAGGCGGTCGAGTCCGCGGTCAAAGATGGACTGCAGGAGGCCCTCAAGCTTCAACAGAATGGGAAGAGGAAGAAGATCGAAGATCCACGACTTGTCGACGCCAAGCGAGCTAAATTGTGGATGCTTGAAGAAGATGAAGAAGAAGATATTGATGAAATGATGGGTATGGAGAATCAAGGGATTATTTTGATGAAAGATCCAGAAACAGGTAGCTGTTCAACTAAATCAGAATCAGCATCAGATAACGAAACAGCATCATTTTCTAATAAGGGCAATTCCAAAACTGACTCTTGCAATGATGATGTCACGATGGAAGTTCCTGTTGTTTCTTTGGGAGCGAATGACAATGGTAGTAATGAGCTAAAAGCTAGTATTGTGTTGGAAGAAGAGGAACCAACATTCTCTGGTGACAACAATGGTTGTGGTAAGAGGAAGACCTGTGTAGAGTTGAAAAGGGAGGATCCTGTTTCCTCAAGCTCCATTCATGGGCAGAATATAACGCTGCCTAAGTTGGTTGATGATGAAACTACATCTGATGCTAATGTTGAAAAAAGTCAGCTTTCACATCCCGAAATGAGTGCATCAGACTCTGTTGGATGCCATTCTGGTAGCAGGGAATCTCATGTAGATCTGAAAAAGGAAGAACCCATTGCCTCAAGCTCTGTTGAAGGGAAGAACATAACATCAGCTAGTTTGGTCGAAGATGAGATCACCTCCGTTGCTAATGTTGAAAAATGTCAGCTTTCATGTTCAGAGATGGCTGCATCGGTCACTGCCGGATGCATTTCTGACACAACTGCTGTACAGGGAGAAATAGACAGTGTTTGCGACAGTAATGGTAGCATGGGAGGACCACTCAACTTGGATGACTTTAACAATGCTGAAGAGATGGAGGTTCTGGGGCTTGAAAGGCTAAAAAATGAATTACAGATTCGTGGTTTAAAATGTGGTGGTAACCTTACTGAGCGTGCTGCAAGATTATTTCTTCTGAAAACAACACCTTTGGAGAAACTCCCCAAGAAGCACTTTGCAAAGTCAAAGGATATAGGGAAGTAAAATTCAGTGTTTTTACTGATTTGAAATGTATGAGAAGTACTTGTGTACCATTTGTCAAGGAAATTGTTTATGCAGGTTAATACATTGAACATTTAACGATGACAGGATACTATGTGCTTATTTTCAATTGTATATTTGGAAAACATGCCATAAGATGGTTACAACTGTTGTACACTGTTAGATGTATGACTTCTAATCTGAATGTTTTCTTACCTATATATTATCTTCCCAAATTGTGCGTGGTGTCTGGCACGTGTAAAATCATGGGCCTTTCAGAATAAGTGGAACTGACAAGCTTAAGAACCATTTGGTGAATTTCTTGGAGCCGGTTAAGGATTATGAGAAAAAAGGAAATAAATGCTTAGATGCATATGATGACCTATGCTTAGACATCTCATCTGCTGT

Ace file of the UniGene sp_v1.1_unigene997

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ubiquitin family protein	-	-	9.0e-37	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	protein	-	-	0.0	55%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUY3

Fln msg: your sequence is longer than subject: 525 - 340

Fln protein: MYQIFVKGLDGRTKCLQVSAPHLAVSDLKDRLFDLIKVPPQFQRLVSGTRQIADDALLVAARDGLYPQVHLLLRLRGGKGGFGSLLRGAATKAGQKKTSNFDACRDMSGRRLRHVNAEKKLEEWKAEAQERQLEKIAEDYLKKQAKIMKKSDPRSDEGARDVEKYRTEASRAMEAVESAVKDGLQEALKLQQNGKRKKIEDPRLVDAKRAKLWMLEEDEEEDIDEMMGMENQGIILMKDPETGSCSTKSESASDNETASFSNKGNSKTDSCNDDVTMEVPVVSLGANDNGSNELKASIVLEEEEPTFSGDNNGCGKRKTCVELKREDPVSSSSIHGQNITLPKLVDDETTSDANVEKSQLSHPEMSASDSVGCHSGSRESHVDLKKEEPIASSSVEGKNITSASLVEDEITSVANVEKCQLSCSEMAASVTAGCISDTTAVQGEIDSVCDSNGSMGGPLNLDDFNNAEEMEVLGLERLKNELQIRGLKCGGNLTERAARLFLLKTTPLEKLPKKHFAKSKDIGK*

Protein Length: 526

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTAATCATTCTCTATTTAAGTAAATAGTTGTGATGGGCACGGGCATAAGAGTCTGTCTATGAATCTGATCGACTCATCACAGCACAGCCGACCCAACCAACCTGATATATTTACATGGATATTGGTAGACCAGGAGTCTTCTTCGGTGGAAACATAGATAATTTCTGAGAAGATCATCTGCATTGTGTTTGCTTCCCCATCATTAGAAAAAAATCTCCAATTCGGAGTTGCAGGGTTCGAACTTGAGACCATCTATCGTC_-_ATGTATCAAATCTTCGTCAAGGGTTTGGATGGCAGAACAAAATGCCTGCAGGTGTCTGCACCCCACCTCGCGGTCTCGGATCTGAAGGACAGGCTCTTCGATCTGATTAAAGTTCCTCCGCAGTTTCAGAGGCTCGTTTCGGGCACCCGCCAGATCGCCGATGACGCCCTTCTGGTCGCCGCCCGCGACGGCCTGTATCCACAAGTCCATCTCCTCCTCCGCCTGAGAGGGGGCAAAGGGGGTTTCGGCTCTCTTCTGAGGGGCGCCGCCACCAAGGCCGGCCAGAAGAAGACCAGCAATTTTGATGCTTGCCGCGACATGAGCGGAAGGAGGCTCCGCCACGTGAACGCCGAGAAGAAGCTGGAGGAGTGGAAGGCGGAGGCGCAGGAGAGGCAGCTCGAGAAGATTGCGGAGGATTACCTGAAGAAGCAGGCGAAGATTATGAAAAAGAGTGACCCTCGCTCCGATGAGGGCGCCAGGGATGTGGAGAAGTACAGGACCGAAGCTTCCAGGGCCATGGAGGCGGTCGAGTCCGCGGTCAAAGATGGACTGCAGGAGGCCCTCAAGCTTCAACAGAATGGGAAGAGGAAGAAGATCGAAGATCCACGACTTGTCGACGCCAAGCGAGCTAAATTGTGGATGCTTGAAGAAGATGAAGAAGAAGATATTGATGAAATGATGGGTATGGAGAATCAAGGGATTATTTTGATGAAAGATCCAGAAACAGGTAGCTGTTCAACTAAATCAGAATCAGCATCAGATAACGAAACAGCATCATTTTCTAATAAGGGCAATTCCAAAACTGACTCTTGCAATGATGATGTCACGATGGAAGTTCCTGTTGTTTCTTTGGGAGCGAATGACAATGGTAGTAATGAGCTAAAAGCTAGTATTGTGTTGGAAGAAGAGGAACCAACATTCTCTGGTGACAACAATGGTTGTGGTAAGAGGAAGACCTGTGTAGAGTTGAAAAGGGAGGATCCTGTTTCCTCAAGCTCCATTCATGGGCAGAATATAACGCTGCCTAAGTTGGTTGATGATGAAACTACATCTGATGCTAATGTTGAAAAAAGTCAGCTTTCACATCCCGAAATGAGTGCATCAGACTCTGTTGGATGCCATTCTGGTAGCAGGGAATCTCATGTAGATCTGAAAAAGGAAGAACCCATTGCCTCAAGCTCTGTTGAAGGGAAGAACATAACATCAGCTAGTTTGGTCGAAGATGAGATCACCTCCGTTGCTAATGTTGAAAAATGTCAGCTTTCATGTTCAGAGATGGCTGCATCGGTCACTGCCGGATGCATTTCTGACACAACTGCTGTACAGGGAGAAATAGACAGTGTTTGCGACAGTAATGGTAGCATGGGAGGACCACTCAACTTGGATGACTTTAACAATGCTGAAGAGATGGAGGTTCTGGGGCTTGAAAGGCTAAAAAATGAATTACAGATTCGTGGTTTAAAATGTGGTGGTAACCTTACTGAGCGTGCTGCAAGATTATTTCTTCTGAAAACAACACCTTTGGAGAAACTCCCCAAGAAGCACTTTGCAAAGTCAAAGGATATAGGGAAGTAA___AATTCAGTGTTTTTACTGATTTGAAATGTATGAGAAGTACTTGTGTACCATTTGTCAAGGAAATTGTTTATGCAGGTTAATACATTGAACATTTAACGATGACAGGATACTATGTGCTTATTTTCAATTGTATATTTGGAAAACATGCCATAAGATGGTTACAACTGTTGTACACTGTTAGATGTATGACTTCTAATCTGAATGTTTTCTTACCTATATATTATCTTCCCAAATTGTGCGTGGTGTCTGGCACGTGTAAAATCATGGGCCTTTCAGAATAAGTGGAACTGACAAGCTTAAGAACCATTTGGTGAATTTCTTGGAGCCGGTTAAGGATTATGAGAAAAAAGGAAATAAATGCTTAGATGCATATGATGACCTATGCTTAGACATCTCATCTGCTGT

Fln Alignment:

sp_v1.1_unigene997___MYQIFVKGLDGRTKCLQVSAPHLAVSDLKDRLFDLIKVPPQFQRLVSGTRQIADDALLVAARDGLYPQVHXXXXXXXXXXXXXXXXXXAATKAGQKKTSNFDACRDMSGRRLRHVNXXXXXXXXXXXXXXRQLEKIAEDYLKKQAKIMKKSDPRSDEGARDVEKYRTEASRAMEAVESAVKDGLQEALKLQQNGKRKKIEDPRLVDAKRAKLWML-XXXXXXXXXXXXXXXNQGIILMKDPETGSCSTKSESASDNETASFSNKGNSKTDSCNDDVTMEVPVVSLGANDNGSNELKASIVLEEEEPTFSGDN-NGCGKRKTCVELKREDPVSSSSIHGQ
A9NUY3_____________MYQIFVKGLDGKTKCLQVSTPNLAVSDLKGRLFDLLKIPPHFQRLVSGTCQIADDALMVAARDGLYPQVHLLLRLRAGKGGFGSLLRGAATKAGQKKTSNFDACRDMSGRRLRHVNAEKKLEEWKAEAQERQLEKIAEDYLKKQAKIMKKSDPRSDEGARDVEKYRTEASRAMEAVECAVKDGLQEALRLQQNGKRKKIEEPQFVDRKRAKLWMLEEEDEEEEIDEMMGMENQGISSMKDPETGSCSTKAESASDNETTSFFKKGTSETDSCNDDVTMEVPVVSLGENDNDCNEIKATIVLEKEESTFLGDNYNGCGKKDPCVELKKEDPVTSSSIYGQ

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
505		83		16	0.994512
573	14		85		0.993533
1019	14		85		0.993533
1179		15		84	0.999986
1221		73	26		1.0
1449	66		5		1.0
1695			88	11	0.999937

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain