SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene993

Length: 1788 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene993

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	myosin heavy chain-related	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	myosin heavy chain-related	-	-	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9M2

Fln msg: your sequence is longer than subject: 464 - 296

Fln protein: MEGRHASLGRKKLEEIRQKKAADRSQKASAGVDPRNSNVSAGLQKTSSGIEETEHWMSNQSTEKEFQALLAYTRQLEADFREQQQQNKSFASKLETLETERDAFEKQLKNMEEIELPSLKKALQDASREKDAAIITREDLSAQLRAVKRRLREVEEEQYKAEEDAATLRAELNMLQRQEEQHQSSGIPSSSVTTEHLRAMEQEMAKIKVDLQEAIRQRQVEQQKLAAEKEHTALLMIEKQQLEEKLLAATVKISGHTSEKNDEGDSSTAENQKQEKGKHDQQLRDLAMMVERLESGRQKLLSEIDMQSLEIERLFVENANLSAGLKDMTSVASQWENQVQECLKQNAELRVTLQKLRAEQANTVSELPLQDAVSSKEITDNDDKQIIGHTMYATENLKLKGELAKTQTKSEALTAQVMQLSVELKRTVQAYDALVRLYKPILWNIENRLIQMKADSFASQTLL*

Protein Length: 465

Fln nts: ATGGCGTCGTGACCTTGGTCGTGACTTGGCTTTCACTCTTGGCGTTCAGTTCCGACAGTCGGGAGTCTTGAAGGTCTTCTTGTCGCAAATACAGGAATACTCTTCCCTTGATTGGCTTCAGAAAATAATGCATTCTGCCCGTTAGCGAAGACAGAAGTACCGCTTTTACAATATATAGTCTTCACACAAAGAAAAACACGCTCAACCAGTTTGAAT_-_ATGGAAGGCCGTCATGCTTCCCTCGGTCGCAAAAAGCTGGAAGAAATTCGGCAAAAGAAGGCAGCAGATAGATCTCAGAAAGCTTCTGCAGGAGTGGATCCTAGGAACTCGAACGTATCAGCAGGGCTCCAGAAAACTAGCAGCGGGATTGAGGAAACTGAACATTGGATGAGCAATCAATCCACTGAGAAAGAATTTCAAGCTTTATTAGCATATACAAGGCAATTAGAAGCTGATTTTAGAGAGCAACAACAGCAAAATAAAAGCTTTGCCTCAAAGCTGGAGACGCTGGAAACAGAGCGAGATGCATTTGAGAAACAGTTGAAGAACATGGAAGAGATTGAGTTGCCATCATTAAAGAAAGCTCTGCAGGATGCCTCTCGGGAGAAGGATGCTGCGATTATAACAAGGGAGGATCTATCAGCACAGCTTCGAGCAGTAAAAAGGCGCCTGAGGGAAGTGGAGGAAGAGCAATATAAGGCTGAAGAAGATGCAGCTACCTTGAGAGCAGAACTAAATATGCTACAACGACAAGAAGAGCAACATCAGAGTAGTGGCATCCCATCATCTTCTGTTACCACGGAACACTTGAGAGCAATGGAACAGGAAATGGCCAAAATTAAGGTTGATTTGCAGGAAGCAATACGACAGAGGCAAGTGGAGCAACAAAAACTAGCTGCGGAGAAAGAACATACGGCTCTGCTTATGATAGAGAAACAGCAACTTGAAGAGAAACTGCTTGCGGCCACTGTGAAAATTTCAGGACACACTTCAGAGAAGAATGATGAGGGGGACTCTTCAACAGCAGAGAATCAGAAGCAAGAAAAGGGAAAACATGACCAACAACTCCGAGATCTTGCAATGATGGTGGAAAGGCTAGAGAGTGGTCGACAGAAACTTCTGTCTGAGATaGATATGCAATCCTTGGAGATAGAAAGGCTATTTGTGGAGAATGCAAATCTATCAGCTGGTCTGAAGGATATGACAAGTGTTGCTTCTCAGTGGGAGAATCAGGTTCAAGAATGTCTAAAACAGAATGCGGAGTTACGTGTCACACTGCAGAAGTTGAGAGCAGAACAGGCAAACACAGTTTCTGAATTGCCTTTGCAGGATGCTGTATCAAGTAAGGAAATTACTGACAACGATGATAAGCAGATTATTGGACATACAATGTATGCCACTGAGAACTTGAAACTTAAGGGAGAACTAGCAAAGACACAGACAAAATCAGAAGCATTAACTGCACAGGTTATGCAGCTATCAGTGGAACTGAAGCGTACTGTTCAGGCTTATGATGCACTGGTTCGACTGTACAAGCCTATCCTGTGGAATATTGAAAATCGCTTGATTCAGATGAAAGCCGATAGTTTTGCATCGCAAACTTTATTGTAA___AATTTGGCAAATGGAAGCTGGATTGATAGCTGAGCAAACATTGTCAATGTACTTTAAGATAGCAATTATTTATGTAGCAGTTAAAAACATTTCTTTAAATGGGTATTTTTATCGTTTTCTATCCAATTGTTTACATTTATAATTCAGTTGATTTATTCTAAATACCATTAACCAAAAAAA

Fln Alignment:

sp_v1.1_unigene993___MLQRQEEQHQSSGIPSSSVTTEHLRAMEQEMAKIKVDLQEAIRQRQVEQQKLAAEKEHTALLMIEKQQLEEKLLAATVKISGHTSEKNDEGDSSTAENQKQEKGKHDQQLRDLAMMVERLESGRQKLLSEIDMQSLEIERLFVENANLSAGLKDMTSVASQWENQVQECLKQNAELRVTLQKLRAEQANTVSELPLQ--DAVSSKEITDND----DKQIIGHTMYATENLKLKGELAKTQTKSEALTAQVMQLSVELKRTVQAYDALVRLYKPILWNIENRLIQMKADSFASQTLL
D5A9M2_____________MLQRQEEQHQNSGIPSSSVTMEHLRAMEQEMANIKVELQEAVRQRQEEQQKLAAEKEHSALLMTEKQQLEEKLLVVTEKISEHISEKNGEENSSTAENQKQEKGKHDQQVRDLAMMVERLESGRQKLLSEIDTQSLEIERLFVENANLSSGLKDMTSVASQWENQVQECLKQNAELRVMLEKLRTEQANTVSKLPMHIVDAVSSKEITNDNEKGIEKGIVGHTVYATENLKLKGELAKTQTKSEALTAQVMQLSVELKRSVQAYNSLARLYKPILWNIENRLIQMKADSFASQAVL

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1131		66		33	0.997452
1208	40		60		1.0
1401		16		83	0.994512
1515		28		71	1.0
1689		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain