SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene977

Length: 2543 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene977
ATGGGGAGGGTTCAAATGAAATTATCCGCGAGATAAGGGCGCAGAGCTTGGTCACACCTATGGCCGCTCGCTTGACAGAGGGCGCTTGGAATTTGCCTACAAATATCTGGCGAAAAGATATCGCCTCGAAAGGTGCAACTGAACAGCCGACCAGGAGAGTAAATGCATAAACTCGCGTTCCCCGTAACGCTATCAGTTTATCGCCGAGCAGATCAAACCCGTGTTCGGCCATTCAATCAACCTTCCTGGCACCCTGGACGACGGCTCTTAGGGTGCCATGACGGAATTTCATGGATTGTGAAGGGAACCGGCTTTGCAGCTCATTTTCCGCTGTAAAATTAATTGTATTGAATTTCAGGAACTGACGTTCCAGGGATTGAAAAAGATGATTCAAATTGCTCCAATTGCCCCGATTGGGGTTTCGATCCCTTTTCAGAACCGCAACAAATTGCAGCCGTGGCGGACAAGGAAAAATGGCGACAATCTGGCGGTATTTGTGTCGAAGAAGCCAGGGCGTTTCGGCAATTGCCGCTGCCAGAAGACCGACCGACTGAACGACATTATCGGCAAGGAAATTAACGGACCCGTCGATATGGTGGCGGCTGAAATGAACGCTAATAATGTGTTAGTTGATAGAATTGTAGCCGACCAGGCGGAGAGAAAACCGAGAGCAGGGACAAATGAGAAGGAGAATCATATCGAGAAGGAAGCGTGGAACCTTCTCAGGTCTGCTGTTGTAGACTACTGCGGGAGCCCGATCGGAACTATTGCTGCAAATGATCCCACTGATCCCAGCATGCTTAATTATGATCAGGTTTTCATTCGCGATTTTATACCTTCTGGAGTGGCGTTTTTGCTCAAAGGAGAGCATGACATCGTCAGGAATTTTATTCTCCATACTCTGCAGTTGCAGAGTTGGGAGAAAACAATGGACTGTCATAGCCCTGGACAAGGTTTGATGCCAGCAAGCTTCAAAGTGCGGACAGTTCCCCGTGATGGGGATGATGATGCCACTGAAGATATACTGGACCCCGACTTCGGAGAGGCAGCAATAGGCCGCGTGGCCCCTGTTGACTCTGGATTATGGTGGATTATTCTTCTTAGAGCATATGGCAAGTTTACAGGAGATCTTTCTGTTCAGGAGAGGACTGATGTTCAAACAGGGATTAAAATGATTTTGAAGTTGTGTCTTGCTGATGGGTTTGATATGTTCCCCACATTATTAGTAACCGATGGATCATGCATGATTGATCGTCGTATGGGAATCCATGGCCATCCCCTGGAAATACAAGCACTATTTTATTCAGCTTTGCGGTGTGCGCGTGAGATGCTAACTCCGGAAGATGGATCTGCAGACCTCATACGAGCATTGAATAACCGGCTGATCGCTTTGTCTTTCCACATCAGAGAATACTACTGGGTTGACATGAAAAAATTAAATGAGATTTATCGGTACAAAACTGAAGAGTACTCATATGATGCAGTAAACAAATTCAACATCTATCCAGATCAAATCTCCACATGGCTGGTAGAATGGATGCCTGACCGGGGAGGCTATTTTATTGGCAATTTACAGCCTGCTCATATGGACTTCCGCTTCTTTTCACTTGGCAACTTGTGGTCTATAGTTTGCAATCTTGCCACTGCAGAACAGTCAGATGCTGTATTGGATCTTATCGGAGAAAAGTGGAATGATTTAGTTGCAGACATGCCCTTAAAAATATGTTATCCAGCTCTTGAAGGCCAAGAATGGCAGATCATCACAGGCAGTGACCCCAAGAACACGCCCTGGTCATACCATAATGGAGGATCTTGGCCCACTTTGTTGTGGCAGCTTACAGTAGCTTGCATAAAAATGAATCGACCAGAATTAGCAAGGAAAGCAGTGGCAGTTGCTGAGAAACGACTATCAAGGGATGGGTGGCCAGAATATTATGATACGAAAAGAGCACGCTTCATAGGCAAGCAAGCACGGCTGTATCAAACATGGTCAATTGCTGGGTATCTTGTGTCCAAGCTTCTCCTCAGAAATCCTGAATTTGCCAAGATTTTGACATGTGAAGAAGATATGGAACTACTCGATGCCTGTTATTGTCTGCTCGAAGCCAATCCCAAAAGAAAGCGGTCACGCAAAAAGCCTTCCAAAAGTTATATTGTCTAATTACCAGTTTGTTTGCTTCTATAAAACAGGCATTGAATTTTTTTACCTAGTTATGCGTCACACAAATCTAAGTGACATGTAACTTGGGAATATTTGCACAGAAACGACTACCAACCACATCTCTTTCAATTCTTTTCCTCGGAAAGTAGAGACACGTTCAACAATGTTGTCATATTAATACCAATTCTTCTAACCAAACATGCAGATTAAGTAAAAATGGTGTAATTATTGGTGTGTTGAGGTGATCACTAACCAAGGAGGTTGATAAACACACAGCCCTCTATCCCGTTACTGCATGTGATATGTGAACTTCGTGTTGAAGCATTGAAGGAAGGTTATTTGAAGGTTATTTTGCAGTGTATAATTTGAACGCCTTTAGTCC

Ace file of the UniGene sp_v1.1_unigene977

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-fructofuranosidase, putative n=1 Tax=Ricinus communis RepID=B9T198_RICCO	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	76%
Blast2go	alkaline neutral invertase	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Beta-fructofuranosidase.	EC:3.2.1.26	-	0.0	86%

Source	KEGGs	Term	Identity
Blast2go	Galactose metabolism	00052	86%
Blast2go	Starch and sucrose metabolism	00500	86%
Blast2go	Metabolic pathways	01100	86%

Source	GOs	Term	Type	Identity
Blast2go	cotyledon development	GO:0048825	Biological Process	86%
Blast2go	starch metabolic process	GO:0005982	Biological Process	86%
Blast2go	beta-fructofuranosidase activity	GO:0004564	Molecular Function	86%
Blast2go	chloroplast	GO:0009507	Cellular Component	86%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Plant neutral invertase	IPR006937	-	0.0	86%
Blast2go	Six-hairpin glycosidase-like	IPR008928	-	0.0	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6I5X0

Fln msg:

Fln protein: MIQIAPIAPIGVSIPFQNRNKLQPWRTRKNGDNLAVFVSKKPGRFGNCRCQKTDRLNDIIGKEINGPVDMVAAEMNANNVLVDRIVADQAERKPRAGTNEKENHIEKEAWNLLRSAVVDYCGSPIGTIAANDPTDPSMLNYDQVFIRDFIPSGVAFLLKGEHDIVRNFILHTLQLQSWEKTMDCHSPGQGLMPASFKVRTVPRDGDDDATEDILDPDFGEAAIGRVAPVDSGLWWIILLRAYGKFTGDLSVQERTDVQTGIKMILKLCLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEIQALFYSALRCAREMLTPEDGSADLIRALNNRLIALSFHIREYYWVDMKKLNEIYRYKTEEYSYDAVNKFNIYPDQISTWLVEWMPDRGGYFIGNLQPAHMDFRFFSLGNLWSIVCNLATAEQSDAVLDLIGEKWNDLVADMPLKICYPALEGQEWQIITGSDPKNTPWSYHNGGSWPTLLWQLTVACIKMNRPELARKAVAVAEKRLSRDGWPEYYDTKRARFIGKQARLYQTWSIAGYLVSKLLLRNPEFAKILTCEEDMELLDACYCLLEANPKRKRSRKKPSKSYIV*

Protein Length: 593

Fln nts: ATGGGGAGGGTTCAAATGAAATTATCCGCGAGATAAGGGCGCAGAGCTTGGTCACACCTATGGCCGCTCGCTTGACAGAGGGCGCTTGGAATTTGCCTACAAATATCTGGCGAAAAGATATCGCCTCGAAAGGTGCAACTGAACAGCCGACCAGGAGAGTAAATGCATAAACTCGCGTTCCCCGTAACGCTATCAGTTTATCGCCGAGCAGATCAAACCCGTGTTCGGCCATTCAATCAACCTTCCTGGCACCCTGGACGACGGCTCTTAGGGTGCCATGACGGAATTTCATGGATTGTGAAGGGAACCGGCTTTGCAGCTCATTTTCCGCTGTAAAATTAATTGTATTGAATTTCAGGAACTGACGTTCCAGGGATTGAAAAAG_-_ATGATTCAAATTGCTCCAATTGCCCCGATTGGGGTTTCGATCCCTTTTCAGAACCGCAACAAATTGCAGCCGTGGCGGACAAGGAAAAATGGCGACAATCTGGCGGTATTTGTGTCGAAGAAGCCAGGGCGTTTCGGCAATTGCCGCTGCCAGAAGACCGACCGACTGAACGACATTATCGGCAAGGAAATTAACGGACCCGTCGATATGGTGGCGGCTGAAATGAACGCTAATAATGTGTTAGTTGATAGAATTGTAGCCGACCAGGCGGAGAGAAAACCGAGAGCAGGGACAAATGAGAAGGAGAATCATATCGAGAAGGAAGCGTGGAACCTTCTCAGGTCTGCTGTTGTAGACTACTGCGGGAGCCCGATCGGAACTATTGCTGCAAATGATCCCACTGATCCCAGCATGCTTAATTATGATCAGGTTTTCATTCGCGATTTTATACCTTCTGGAGTGGCGTTTTTGCTCAAAGGAGAGCATGACATCGTCAGGAATTTTATTCTCCATACTCTGCAGTTGCAGAGTTGGGAGAAAACAATGGACTGTCATAGCCCTGGACAAGGTTTGATGCCAGCAAGCTTCAAAGTGCGGACAGTTCCCCGTGATGGGGATGATGATGCCACTGAAGATATACTGGACCCCGACTTCGGAGAGGCAGCAATAGGCCGCGTGGCCCCTGTTGACTCTGGATTATGGTGGATTATTCTTCTTAGAGCATATGGCAAGTTTACAGGAGATCTTTCTGTTCAGGAGAGGACTGATGTTCAAACAGGGATTAAAATGATTTTGAAGTTGTGTCTTGCTGATGGGTTTGATATGTTCCCCACATTATTAGTAACCGATGGATCATGCATGATTGATCGTCGTATGGGAATCCATGGCCATCCCCTGGAAATACAAGCACTATTTTATTCAGCTTTGCGGTGTGCGCGTGAGATGCTAACTCCGGAAGATGGATCTGCAGACCTCATACGAGCATTGAATAACCGGCTGATCGCTTTGTCTTTCCACATCAGAGAATACTACTGGGTTGACATGAAAAAATTAAATGAGATTTATCGGTACAAAACTGAAGAGTACTCATATGATGCAGTAAACAAATTCAACATCTATCCAGATCAAATCTCCACATGGCTGGTAGAATGGATGCCTGACCGGGGAGGCTATTTTATTGGCAATTTACAGCCTGCTCATATGGACTTCCGCTTCTTTTCACTTGGCAACTTGTGGTCTATAGTTTGCAATCTTGCCACTGCAGAACAGTCAGATGCTGTATTGGATCTTATCGGAGAAAAGTGGAATGATTTAGTTGCAGACATGCCCTTAAAAATATGTTATCCAGCTCTTGAAGGCCAAGAATGGCAGATCATCACAGGCAGTGACCCCAAGAACACGCCCTGGTCATACCATAATGGAGGATCTTGGCCCACTTTGTTGTGGCAGCTTACAGTAGCTTGCATAAAAATGAATCGACCAGAATTAGCAAGGAAAGCAGTGGCAGTTGCTGAGAAACGACTATCAAGGGATGGGTGGCCAGAATATTATGATACGAAAAGAGCACGCTTCATAGGCAAGCAAGCACGGCTGTATCAAACATGGTCAATTGCTGGGTATCTTGTGTCCAAGCTTCTCCTCAGAAATCCTGAATTTGCCAAGATTTTGACATGTGAAGAAGATATGGAACTACTCGATGCCTGTTATTGTCTGCTCGAAGCCAATCCCAAAAGAAAGCGGTCACGCAAAAAGCCTTCCAAAAGTTATATTGTCTAA___TTACCAGTTTGTTTGCTTCTATAAAACAGGCATTGAATTTTTTTACCTAGTTATGCGTCACACAAATCTAAGTGACATGTAACTTGGGAATATTTGCACAGAAACGACTACCAACCACATCTCTTTCAATTCTTTTCCTCGGAAAGTAGAGACACGTTCAACAATGTTGTCATATTAATACCAATTCTTCTAACCAAACATGCAGATTAAGTAAAAATGGTGTAATTATTGGTGTGTTGAGGTGATCACTAACCAAGGAGGTTGATAAACACACAGCCCTCTATCCCGTTACTGCATGTGATATGTGAACTTCGTGTTGAAGCATTGAAGGAAGGTTATTTGAAGGTTATTTTGCAGTGTATAATTTGAACGCCTTTAGTCC

Fln Alignment:

sp_v1.1_unigene977___NCRCQKTDRLNDIIGKEINGP--VDMVAAEMNANNVLVDRIVA---DQAERKPRA------GTNE---------KENHIEKEAWNLLRSAVVDYCGSPIGTIAANDPTDPSMLNYDQVFIRDFIPSGVAFLLKGEHDIVRNFILHTLQLQSWEKTMDCHSPGQGLMPASFKVRTVPRDGDDDATEDILDPDFGEAAIGRVAPVDSGLWWIILLRAYGKFTGDLSVQERTDVQTGIKMILKLCLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEIQALFYSALRCAREMLTPEDGSADLIRALNNRLIALSFHIREYYWVDMKKLNEIYRYKTEEYSYDAVNKFNIYPDQISTWLVEWMPDRGGYFIGNLQPAHMDFRFFSLGNLWSIVCNLATAEQSDAVLDLIGEKWNDLVADMPLKICYPALEGQEWQIITGSDPKNTPWSYHNGGSWPTLLWQLTVACIKMNRPELARKAVAVAEKRLSRDGWPEYYDTKRARFIGKQARLYQTWSIAGYLVSKLLLRNPEFAKILTCEEDMELLDACYCLLEAN
F6I5X0_____________SCKCQRADSVSGIASEAGNGTWFVDNAKKRNPINGVMDTPNVLEFQDVQELKPEMEGSISNGAVETARDTFVKVRVDSIEDEAWDLLRESMVYYCGSPIGTIAAKDPTSSNVLNYDQVFIRDFIPSGIAFLLKGEYDIVRNFILHTLQLQSWEKTMDCHSPGQGLMPASFKVRTVPLDGDDSATEEVLDPDFGEAAIGRVAPVDSGLWWIILLRAYGKCSGDLSVQERIDVQTGIKMILRLCLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEIQALFYSALLCAREMLAPEDGSADLIRALNNRLVALSFHIREYYWIDMKKLNEIYRYKTEEYSYDAVNKFNIYPDQISPWLVEWMPNKGGYLIGNLQPAHMDFRFFSLGNLWSIISSLATMDQSHAILDLVEAKWGDLVADMPLKICYPALEGQEWQIITGSDPKNTPWSYHNAGSWPTLLWQLTVACIKMDRPQIAAKAVEIAERRIARDKWPEYYDTKKARFIGKQACLFQTWSIAGYLVAKLLLSDPTAAKILITEEDSELVNAFSCMISAN

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
328	25	75			0.996473
365	80		20		0.995493
847	25		50	25	1.0
849		50	50		1.0
850		50	50		1.0
851			50	50	1.0
1315	16		83		0.994512
1364		83		16	0.994512
1386		16		83	0.994512
1520	88	11			0.923564
1522	88		11		0.923564
1525			88	11	0.923564
1527	11			88	0.923564
1630		15		84	0.999986
2077	69		30		1.0
2111	11	88			0.923564
2126			16	83	0.994512
2172	25		75		0.996473
2359	88			11	0.923564
2360		88	11		0.923564
2361	88		11		0.923564
2362			11	88	0.923564
2507		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain