SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene976

Length: 1365 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene976

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DNA repair protein xp-E, putative n=1 Tax=Ricinus communis RepID=B9SKT9_RICCO	-	-	84%
FL-Next	sp=DNA damage-binding protein 1; Solanum lycopersicum (Tomato) (Lycopersicon esculentum).	-	-	64%
Blast2go	uv-damaged dna-binding	-	-	91%

Source	GOs	Term	Type	Identity
Blast2go	negative regulation of photomorphogenesis	GO:0010100	Biological Process	91%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	91%
Blast2go		GO:0016481	Biological Process	91%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	91%
Blast2go	protein binding	GO:0005515	Molecular Function	91%
Blast2go	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	91%
Blast2go	nucleus	GO:0005634	Cellular Component	91%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cleavage/polyadenylation specificity factor, A subunit, C-terminal	IPR004871	-	0.0	91%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q6QNU4

Fln msg: Overlapping hits, possible frame ERROR between 162 and 81, your sequence is shorter than subject: 446 - 1090

Fln protein: AASDRPTVIYSSNRKLLYSNVNLKEVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDIQKLHIRAVPLGEHARRICHQEQSRTFAICSVKYSQTNIEETETHFVRLLDDQTFEVLSSYQLDTYENGCSILSCSFTDDNNAYYCVGTAYVLPEENEPNKGRILVFSVEDGKLQLVTEKETKGSVYNLNAFNGKLLAGINQKIQLYKWVLRDDGSRELQSECGHHGHILALYVQSRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMTAVEILDDDIYLGAENNFNLFTVRKNSDAATDEERGKLEVVGEYHLGEFVNLFRHGSLVMRLPDSESSQIPTVIFGTVNGVIGVIASLPQEQYLFLEKLQANLVKVIKGVGGLSHEQWRSFSNERKTVDAKCFLDGDLIESFLDLSRNRMEEIATAMSVPVEELCKRVEEMTRLH*

Protein Length: 447

Fln nts: GCAGCATCAGACAGGCCAACAGTTATTTACAGTAGCAATCGGAAGTTGCTGTATAGCAATGTGAATCTCAAGGAAGTCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGACATTCAGAAACTTCATATCCGTGCAGTTCCTCTTGGAGAGCATGCTCGTCGTATTTGCCATCAGGAGCAATCTCGCACCTTTGCCATTTGCAGTGTGAAGTATTCTCAAACAAATATTGAGGAGACTGAAACACACTTTGTGCGCCTGTTAGATGATCAGACATTTGAAGTTCTTTCATCATATCAACTTGATACTTATGAAAATGGATGTTCCATCCTCAGTTGTTCATTTACAGATGACAACAATGCTTATTATTGTGTTGGGACAGCGTATGTATTGCCCGAGGAGAATGAACCGAACAAGGGCCGAATTTTAGTATTTTCAGTTGAAGATGGTAAACTGCAACTTGTTACTGAGAAGGAGACAAAGGGTTCTGTTTACAATCTGAATGCATTTAATGGAAAGTTGCTTGCTGGCATTAATCAAAAGATTCAGTTATACAAATGGGTGCTCCGTGATGATGGTTCAAGAGAGTTGCAGTCTGAATGTGGCCATCATGGTCATATTCTTGCACTATATGTTCAATCTCGTGGAGATTTTATTGTAGTTGGTGATTTGATGAAATCAATCTCTTTATTGATATACAAGCATGAGGAGGGAGCAATTGAAGAGAGGGCTCGTGATTATAATGCAAATTGGATGACAGCAGTTGAAATTCTAGATGATGATATATACCTTGGAGCAGAGAACAATTTCAACCTTTTTACAGTGAGGAAAAATAGCGATGCTGCAACTGATGAAGAGAGAGGAAAATTGGAAGTTGTAGGTGAATACCACTTAGGAGAGTTTGTTAATCTTTTCAGGCATGGATCTCTTGTTATGCGTCTGCCAGATTCAGAATCTAGCCAGATTCCTACAGTTATATTTGGAACAGTCAATGGTGTTATTGGTGTCATTGCATCTCTTCCTCAGGAGCAATATCTGTTTCTTGAAAAGTTGCAAGCAAATCTTGTCAAGGTGATCAAGGGAGTAGGGGGCTTAAGCCATGAACAGTGGCGATCATTTAGCAATGAAAGGAAGACTGTGGATGCAAAATGTTTCCTGGACGGTGATTTGATTGAGTCATTTCTGGATCTCAGCAGAAATCGGATGGAGGAAATTGCAACTGCAATGTCTGTTCCAGTAGAGGAGCTATGCAAGAGAGTGGAAGAGATGACCAGATTACATTGATATAGAGATGGTGTGCAAACCCCAAATT

Fln Alignment:

sp_v1.1_unigene976___AASDRPTVIYSSNRKLLYSNVNLKEVxxxxxxxxxxxxxxxxxxxxxxxxxxxxDDIQKLHIRAVPLGEHARRICHQEQSRTFAICSVKYSQTNIEETETHFVRLLDDQTFEVLSSYQLDTYENGCSILSCSFTDDNNAYYCVGTAYVLPEENEPNKGRILVFSVEDGKLQLVTEKETKGSVYNLNAFNGKLLAGINQKIQLYKWVLRDDG-SRELQSECGHHGHILALYVQSRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMTAVEILDDDIYLGAENNFNLFTVRKNSDAATDEERGKLEVVGEYHLGEFVNLFRHGSLVMRLPDSESSQIPTVIFGTVNGVIGVIASLPQEQYLFLEKLQANLVKVIKGVGGLSHEQWRSFSNERKTVDAKCFLDGDLIESFLDLSRNRMEEIATAMSVPVEELCKRVEEMTRLH
Q6QNU4_____________AASDRPTVIYSSNKKLLYSNVNLKEVxxxxxxxxxxxxxxxxxxxxxxxxxxxxDEIQKLHIRSIPLGEHARRISHQEQTRTFALCSVKYTQSNADDPEMHFVRLLDDQTFEFISTYPLDQFEYGCSILSCSFSDDSNVYYCIGTAYVMPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWASREDGGSRELQTECGHHGHILALYVQTRGDFIVVGDLMKSISLLIFKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERSRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHDQYLFLEKLQTNLRKVIKGVGGLSHEQWRSFYNEKKTVDAKNFLDGDLIESFLDLSRNRMEEISKAMSVPVEELMKRVEELTRLH

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
589		16		83	0.994512
970		66		33	1.0
976		12		87	0.992554
1104	88		11		0.923564

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain