SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene973

Length: 2108 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene973
GAGAAATGCTTTGAATGGGAATGAAGCATGATACAANGATNGNGAGCCTTNGCTNNGCANNCAACTCCCTCGACCTATTGATCGGACGATGGGAGATGCAGTTCAGTTGGAGAGGATGAAGAACTTGAAACGCTTTCGAAAGTTGGTTTGTTTATTGAATCCGACCGTAACTCGCAACACATAAGCAGGGAAAGCAGAGGACGCTAGGGGCGAGGAAACTCGGATTCGCAGTTGTGCTCTTAGTATCCTCCTCTATTTGGTTTAGGGTTTATCAAGGGTACAGCCTATTCTCCCGCGGAAGCTGAAAAAATGACGATGGCAATGGGAGGAGCGATCGCTGTATCGGAGCCTTCAATGGCTTTAAGAACGAATTTATTGACATGTCTACCTTCTAAATCCTCCGCTGCTCAAATAAGGTTACACAGATGGAAGAAGAATAACAAGTGTTCAATTATTCGAGCAGGAGCAGACATTACATTAGATGTTAAAACTCGTCGACCGGATGTTGATCGTGCTATAGAAGAAACTTTAAACAACTTTGGCTGCCTATCTGAAACTTATCTCGACAAAACTGTTCCAGGCGTGGGATCGAAGATCAGGGGCAAAGTTAGAGATATTTACAGTGCTGGAGATTATTTAATCTTGGTCACAACTGATCGGCAAAGTGCATTTGACAGGATTCTTGCTTCTGTGCCATTCAAAGGGCAGGTTTTAAATCAGACAAGTTTGTGGTGGTTTCACAAGACAAAAGAGATGGTACCAAATGCTGTTGTATCATCGCCTGATCCTAATGTAATGATTGTCCAGAAATGCACTGTTTTCCCTGTTGAATTTGTCGTCAGAGGATTTGTGACTGGAACTACTAGTACATCACTGTGGACTGTTTATAGCAAAGGTGTGAGGAACTATTGTGGCAACATACTCCCAGATGGTCTAGTTAAGAATCAACGTCTTCAGAAATATATTATTACTCCAACAACAAAGGCAGCAGATCATGATGTTCCAATTTCTCCCGAAGAGATAGTTGAACAAGGGCTAATGACAAGAGATGAATGGAACGAAGCATGCAGTAAAGCCTTAGCACTTTTTGCATATGGGCAGGATATGGCATCCAAGCATGGCCTGTTATTAGTGGACACAAAGTATGAGTTTGGCAAGGCAGTGGATGGTTCAATCCTTTTAATTGATGAGGTACACACACCTGACTCAAGTAGGTATTGGATTGCTGGTTCTTTTGAGGAGCGCATAAAGAAAGGGTTAGAGCCTGAGAATATTGACAAGGAGTTCTTGCGTCTGTGGTTCCGTAACAATTGTGACCCTTATAAAGATGAGGTTTTACCAGATGCTCCACGTGAACTTGTTTCCGAGCTTGCTTGGCGCTATATTTTCCTATATGAAACAATAACAGGCTTAAAGTTTGATCTACCAGAGTTGAAGGAGTCAAAACATGAGCGTATCACAAGAAATGTTTCACAGGCAGTATTGCATCATTAATACTCTTTCTTGTGTAAAAAGGCCAAACAAGATTTGCCTGGGAGATTTTGTATGCATTGTTTGCATGTGCAAAGGTCCGCAAGTGCATGCATTTAATGAAGGGATCTGAGTTTTAAATATGACCTGCAGTGTCTCAAATGCTAGATGTGATCATCAGATATTCCTGTGCAAAAGAAATGCATTCTGTTGGAAGGTCCACAGTATATTTGCTTACTGCATAATAGTGTGGGAGTTGGTACCAGCCAAGAAAAGCTTCTCTTGAGAGATAGATTATGATGTTGGGAAGACCATCTGCGGTATCCAGCATATGCCTAAAGCACAACTGCTTTAAAGAACAGTTCCTGTACGAGCATTTATGTCAAGCAAATGACTTTATGAAAAAGCCTGAATGCATATGACATCTCTTTATCTTTGACAAATGCCAACTCTAATTTCTTATACAAGAATATTGTCATGGGAGTGTGATTTTTTGAGGTGTCAAATCTGTCACCCTTCCAGCCATCTATGATTTAATTATTTGTGTTTTTGCACAGATAAGCAGTCATTTTTCTTGAATGTTCTTGTATGTATCCCTTAATTTGTGATGTGAATCTTAGAGCTTTACATCTTTCCTT

Ace file of the UniGene sp_v1.1_unigene973

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phosphoribosylaminoimidazole-succinocarboxamide synthase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RI26_PHYPA	-	-	70%
FL-Next	sp=Phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	70%
Blast2go	saicar synthetase	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphoribosylaminoimidazolesuccinocarboxamide synthase.	EC:6.3.2.6	-	0.0	85%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	85%
Blast2go	Metabolic pathways	01100	85%
Blast2go	Biosynthesis of secondary metabolites	01110	85%

Source	GOs	Term	Type	Identity
Blast2go	purine nucleotide biosynthetic process	GO:0006164	Biological Process	85%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	85%
Blast2go	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity	GO:0004639	Molecular Function	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P38025

Fln msg: your sequence is shorter than subject: 395 - 411

Fln protein: MTMAMGGAIAVSEPSMALRTNLLTCLPSKSSAAQIRLHRWKKNNKCSIIRAGADITLDVKTRRPDVDRAIEETLNNFGCLSETYLDKTVPGVGSKIRGKVRDIYSAGDYLILVTTDRQSAFDRILASVPFKGQVLNQTSLWWFHKTKEMVPNAVVSSPDPNVMIVQKCTVFPVEFVVRGFVTGTTSTSLWTVYSKGVRNYCGNILPDGLVKNQRLQKYIITPTTKAADHDVPISPEEIVEQGLMTRDEWNEACSKALALFAYGQDMASKHGLLLVDTKYEFGKAVDGSILLIDEVHTPDSSRYWIAGSFEERIKKGLEPENIDKEFLRLWFRNNCDPYKDEVLPDAPRELVSELAWRYIFLYETITGLKFDLPELKESKHERITRNVSQAVLHH*

Protein Length: 396

Fln nts: GAGAAATGCTTTGAATGGGAATGAAGCATGATACAAaGATcGtGAGCCTTgGCTacGCAtgCAACTCCCTCGACCTATTGATCGGACGATGGGAGATGCAGTTCAGTTGGAGAGGATGAAGAACTTGAAACGCTTTCGAAAGTTGGTTTGTTTATTGAATCCGACCGTAACTCGCAACACATAAGCAGGGAAAGCAGAGGACGCTAGGGGCGAGGAAACTCGGATTCGCAGTTGTGCTCTTAGTATCCTCCTCTATTTGGTTTAGGGTTTATCAAGGGTACAGCCTATTCTCCCGCGGAAGCTGAAAAA_-_ATGACGATGGCAATGGGAGGAGCGATCGCTGTATCGGAGCCTTCAATGGCTTTAAGAACGAATTTATTGACATGTCTACCTTCTAAATCCTCCGCTGCTCAAATAAGGTTACACAGATGGAAGAAGAATAACAAGTGTTCAATTATTCGAGCAGGAGCAGACATTACATTAGATGTTAAAACTCGTCGACCGGATGTTGATCGTGCTATAGAAGAAACTTTAAACAACTTTGGCTGCCTATCTGAAACTTATCTCGACAAAACTGTTCCAGGCGTGGGATCGAAGATCAGGGGCAAAGTTAGAGATATTTACAGTGCTGGAGATTATTTAATCTTGGTCACAACTGATCGGCAAAGTGCATTTGACAGGATTCTTGCTTCTGTGCCATTCAAAGGGCAGGTTTTAAATCAGACAAGTTTGTGGTGGTTTCACAAGACAAAAGAGATGGTACCAAATGCTGTTGTATCATCGCCTGATCCTAATGTAATGATTGTCCAGAAATGCACTGTTTTCCCTGTTGAATTTGTCGTCAGAGGATTTGTGACTGGAACTACTAGTACATCACTGTGGACTGTTTATAGCAAAGGTGTGAGGAACTATTGTGGCAACATACTCCCAGATGGTCTAGTTAAGAATCAACGTCTTCAGAAATATATTATTACTCCAACAACAAAGGCAGCAGATCATGATGTTCCAATTTCTCCCGAAGAGATAGTTGAACAAGGGCTAATGACAAGAGATGAATGGAACGAAGCATGCAGTAAAGCCTTAGCACTTTTTGCATATGGGCAGGATATGGCATCCAAGCATGGCCTGTTATTAGTGGACACAAAGTATGAGTTTGGCAAGGCAGTGGATGGTTCAATCCTTTTAATTGATGAGGTACACACACCTGACTCAAGTAGGTATTGGATTGCTGGTTCTTTTGAGGAGCGCATAAAGAAAGGGTTAGAGCCTGAGAATATTGACAAGGAGTTCTTGCGTCTGTGGTTCCGTAACAATTGTGACCCTTATAAAGATGAGGTTTTACCAGATGCTCCACGTGAACTTGTTTCCGAGCTTGCTTGGCGCTATATTTTCCTATATGAAACAATAACAGGCTTAAAGTTTGATCTACCAGAGTTGAAGGAGTCAAAACATGAGCGTATCACAAGAAATGTTTCACAGGCAGTATTGCATCATTAA___TACTCTTTCTTGTGTAAAAAGGCCAAACAAGATTTGCCTGGGAGATTTTGTATGCATTGTTTGCATGTGCAAAGGTCCGCAAGTGCATGCATTTAATGAAGGGATCTGAGTTTTAAATATGACCTGCAGTGTCTCAAATGCTAGATGTGATCATCAGATATTCCTGTGCAAAAGAAATGCATTCTGTTGGAAGGTCCACAGTATATTTGCTTACTGCATAATAGTGTGGGAGTTGGTACCAGCCAAGAAAAGCTTCTCTTGAGAGATAGATTATGATGTTGGGAAGACCATCTGCGGTATCCAGCATATGCCTAAAGCACAACTGCTTTAAAGAACAGTTCCTGTACGAGCATTTATGTCAAGCAAATGACTTTATGAAAAAGCCTGAATGCATATGACATCTCTTTATCTTTGACAAATGCCAACTCTAATTTCTTATACAAGAATATTGTCATGGGAGTGTGATTTTTTGAGGTGTCAAATCTGTCACCCTTCCAGCCATCTATGATTTAATTATTTGTGTTTTTGCACAGATAAGCAGTCATTTTTCTTGAATGTTCTTGTATGTATCCCTTAATTTGTGATGTGAATCTTAGAGCTTTACATCTTTCCTT

Fln Alignment:

sp_v1.1_unigene973___LDVKTRRPDVDRAIEETLNNFGCLSETYLDKTVPGVGSKIRGKVRDIYSAGDYLILVTTDRQSAFDRILASVPFKGQVLNQTSLWWFHKTKEMVPNAVVSSPDPNVMIVQKCTVFPVEFVVRGFVTGTTSTSLWTVYSKGVRNYCGNILPDGLVKNQRLQKYIITPTTKAADHDVPISPEEIVEQGLMTRDEWNEACSKALALFAYGQDMASKHGLLLVDTKYEFGKAVDGSILLIDEVHTPDSSRYWIAGSFEERIKKGLEPENIDKEFLRLWFRNNCDPYKDEVLPDAPRELVSELAWRYIFLYETITGLKFDLPELKESKHERITRNVSQAV
P38025_____________LVTSNRKGEVLGTIKDSLSN--CLSETNLLATVPGLKSRIKGKVRDIYDAGDYLVLITTDRLSAFDRNLASIPFKGQVLNETSLWWFNNTQHITPNAIVSSPDRNVVIAKKCSVFPIEFVVRGYVTGSTDTSLWTVYNKGVRNYCGNELSDGLVKNQKLPANILTPTTKAADHDVPISPNEIVEGGFMTQAEFDEASMKALSLFEFGQGVAKKHGLILVDTKYEFGRSSDGSILLIDEIHTPDSSRYWLAGSYEERFQKGLEPENVDKEFLRLWFKENCNPYEDEVLPAAPAELVTELAWRYIFLYETITGSRIDIIPTQEPIHDRISRNTSQAL

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
490	66			33	0.997452
491	66		33		0.997452
492		66	33		0.997452
493			33	66	0.997452
565		75		25	0.996473
762		88		11	0.923564
1078		88		11	0.923564
1079			11	88	0.923564
1081	88	11			0.923564
1082	11		88		0.923564
1084	88			11	0.923564
1264	16		83		0.994512
1428		83		16	0.994512
1430			83	16	0.994512
1431	83			16	0.994512
1433			16	83	0.994512
1479		83		16	0.994512
1654	87		12		0.992554
1655			12	87	0.992554
1673	71		14		0.984337
1758	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain