SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene972

Length: 1748 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene972

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Serine/threonine protein kinase, putative n=1 Tax=Ricinus communis RepID=B9SWQ3_RICCO	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	serine threonine protein	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	83%
Blast2go	transferase activity	GO:0016740	Molecular Function	83%
Blast2go	cytoplasm	GO:0005737	Cellular Component	83%
Blast2go	nucleolus	GO:0005730	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	83%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	83%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	83%
Blast2go	Protein kinase-like domain	IPR011009	-	83%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	83%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKY3

Fln msg: atg_distance in limit (1-15): atg_distance = 5, your sequence is shorter than subject: 527 - 545

Fln protein: MQRADDCNQSMVSTESAREKSTDSCVPMSGTLSTCSSIDVSFKSSLSSTITGSSSVKSSFSGKVSDGMGAEAKIPECKTVDNVKNERLECVESGKSSLSVASYRSSVSDSNESNCSSLSSAINKPHKGNDPRWDAIQAILDTDGFLGLSHFRLLKRLGSGDIGSVYLAELRGTNCFFAMKVMDKGSLENRNKSLRAQTEREILSCLDHPFLPTLYSHFETDKFSCLVMEFCSGGDLHTFRQRQPGKRFSEAASRFYAAEILLALEYLHMLGIVYRDLKPENVLVRGDGHIMLLDFDLSLRCVVSPTLVKSACIDISRRAPVYCVQPSCIEPSCVTPVCLQPSCFRPRFLPQRSKKTRKPKSEFVNQATLLPELIAEPTSARSMSFVGTHEYLAPEIIKGQGHGSAVDWWTFGIFLYELLYGTTPFKGASNRETLENVVGQPLKFPDSPTVSFAARDLIRGLLVKDPQHRIGFKRGATEIKQHPFFDSANWALIRSTTPPQIPKPVDLSFLTNKVSPPSARGEKKKL*

Protein Length: 528

Fln nts: AGAC_-_ATGCAGAGAGCAGATGATTGCAATCAGAGCATGGTGTCGACAGAGTCAGCTAGAGAGAAGAGCACTGATTCATGTGTTCCAATGAGTGGGACTCTCAGTACATGCAGTAGCATTGATGTAAGTTTCAAGAGCAGTCTGAGCAGCACCATCACTGGTTCTAGTAGTGTCAAGAGCAGTTTTAGTGGGAAGGTAAGTGATGGCATGGGTGCAGAAGCAAAGATTCCTGAATGCAAAACCGTTGACAATGTCAAGAATGAAAGGCTTGAGTGTGTTGAAAGTGGGAAGAGTAGCCTGAGCGTGGCGAGCTACAGAAGCAGTGTTAGTGACAGCAATGAGAGTAACTGCAGTAGTTTGAGCAGTGCAATAAACAAACCACACAAAGGCAATGATCCAAGATGGGATGCCATTCAGGCCATactgGaCActGATGGCTTTTTGGGTTTGAGTCATTTCAGGCTTCTGAAGCGCTTGGGAAGTGGGGATATTGGGAGTGTTTACTTAGCAGAGTTGAGGGGAACCAACTGTTTTTTTGCAATGAAAGTAATGGATAAAGGGTCACTGGAAAACAGGAATAAGTCTCTAAGAGCGCAGACCGAGAGAGAGATTCTCTCTTGTTTAGATCATCCATTCTTACCGACATTGTATTCTCATTTCGAGACAGATAAGTTCTCCTGCCTGGTCATGGAGTTTTGCAGTGGAGGGGATCTACATACCTTTCGGCAGCGACAGCCTGGGAAACGCTTTTCTGAAGCTGCTTCACGGTTTTATGCAGCAGAAATCCTACTTGCCCTGGAGTATTTGCACATGCTGGGAATAGTCTATAGGGATCTGAAGCCTGAAAATGTTCTAGTTAGAGGGGATGGGCACATTATGCTTTTAGACTTTGATTTATCATTAAGGTGTGTTGTCAGCCCCACTCTTGTAAAGTCGGCATGTATCGATATTTCACGAAGAGCCCCTGTGTACTGCGTTCAACCCTCTTGCATAGAGCCTTCATGCGTGACACCAGTGTGTCTGCAGCCTTCTTGTTTCAGACCTCGTTTTTTACCTCAGAGATCCAAGAAAACACGAAAGCCAAAGAGTGAGTTTGTAAATCAGGCAACCCTTCTTCCAGAACTAATTGCGGAGCCGACCAGTGCTCGATCCATGTCGTTTGTGGGTACTCACGAGTACTTGGCTCCTGAAATAATCAAAGGGCAGGGCCACGGGAGTGCTGTTGACTGGTGGACATTTGGGATCTTTTTATACGAGCTGCTTTACGGCACGACACCGTTCAAGGGGGCAAGCAATCGAGAAACGTTAGAGAACGTTGTTGGGCAGCCATTGAAGTTCCCTGATTCTCCGACTGTAAGTTTTGCTGCTCGCGACTTGATCAGAGGTTTGCTTGTGAAAGACCCGCAACATAGGATAGGCTTTAAAAGGGGAGCAACTGAAATCAAACAACATCCATTTTTTGACAGCGCAAACTGGGCTCTTATTCGCAGCACCACACCTCCTCAAATTCCAAAACCTGTTGATCTGAGCTTCTTAACGAACAAAGTCAGTCCTCCCAGTGCTCGTGGCGAGAAAAAAAAATTGTAG___ATTCTGATGCGAATTCCTTTGATTTTGATTTTTTCTAGTTTGGATAATGCCCTGCAATCCAATCTGCAGAACACATGCTTATATTTGATACTCCATTTTCAAGAAATTTAAAAGTTTGTATTGTAGGCTGTGCCTATGTTTCAGTAAAACTTCAGTCCAACCT

Fln Alignment:

sp_v1.1_unigene972___MQRADDCNQSMVSTESAREKSTDSCVPMSGTLSTCSSIDXXXXXXXXXXXXXXXXXXXXXXXXXXDGMGAEAKIPECKTVDNVKNERLECVESGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPHKGNDPRWDAIQAILDTDGFLGLSHFRLLKRLGSGDIGSVYLAELRGTNCFFAMKVMDKGSLENRNKSLRAQTEREILSCLDHPFLPTLYSHFETDKFSCLVMEFCSGGDLHTFRQRQPGKRFSEAASRFXXXXXXXXXXXXHMLGIVYRDLKPENVLVRGDGHIMLLDFDLSLRCVVSPTLVKSAC--IDISRRAPVYCVQPSCIEPSCVTPVCLQPSCFRPRFLPQRSKKTRKPKSEFVNQATLLPELIAEPTSARSMSFVGTHEYLAPEIIKGQGHGSAVDWWTFGIFLYELLYGTTPFKGASNRETLENVVGQPLKFPDSPTVSFAARDLIRGLLVKDPQHRIGFKRGATEIKQHPFFDSANWALIRSTTPPQIPKPVDLSFLTNKVSPPSARGE
B8LKY3_____________MQRADDCNQSMVSTESAREKSTDSCVPMSGTLSTSSSIDVSFKSSLSSTITGSSSVKSSFSGKVSDGMGADAKIPECKSIDNLKNERLECVESGKSSLSVASYRSSVSDSNESNCSSLSSSLNKPHKGNDPRWDAIQAVKVRDGFLGLSHFRLLKRVGSGDIGSVYLAELRGTNCFFAMKVMDKGSLENRNKSLRAQTEREILSCLDHPFLPTLYSHFETDKFSCLVMEFCSGGDLHSFRQQQPWKRFSESASRFYAAEILLALEYLHMMGIVYRDLKPENVLVRGDGHIMLLDFDLSLRCVVSPTLVKSASPGLDPSRRVPVYCVQPSCIEPSCVTPVCLQPSCFRPRFLPQRSKKIRKPKNEMANQSNLLPELIAEPTSARSMSFVGTHEYLAPEIIKGQGHGSAVDWWTFGIFLYELLYGTTPFKGAGNRETLEKIAGQALRFPDSPTVSFAARDLIRGLLMKDPQHRLAFKRGATEIKQHPFFDGANWALIRSTTPPQIPKPIDLSFLTNKVTPPSARGE

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
181		28		71	1.0
307		40	60		1.0
411	66		33		0.997452
413		33		66	0.997452
414		66	33		0.997452
415	66			33	0.997452
417	33		66		0.997452
420	66			33	0.997452
549	25			75	0.996473
602			85	14	0.993533
604		14	85		0.993533
606			85	14	0.993533
607	85		14		0.993533
609	85		14		0.993533
970	10		90		0.90298
972	90		10		0.90298
973		90	10		0.90298
974			10	90	0.90298
1011		90	10		0.90298
1012	90		10		0.90298
1013		90	10		0.90298
1079	90		10		0.90298
1080	90		10		0.90298
1176	90		10		0.90298
1318	5	11		83	0.999887
1321		11		88	0.999937
1323			88	11	0.999937
1334	88		11		0.999937
1335	88	11			0.999937
1336			88	11	0.999937
1337			11	88	0.999937
1340	11	88			0.999937
1360		10		90	0.999898
1570		75		25	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain