SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene971

Length: 1806 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene971

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	calmodulin, putative	-	-	1.0e-21	53%
FL-Next	sp=Caltractin; Scherffelia dubia (Green alga) (Chlamydomonas dubia).	-	-	0.0	37%
Blast2go	af325029_1 at1g73440	-	-	8.71457e-23	67%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Calcium-binding EF-hand	IPR002048	-	8.71457e-23	67%
Blast2go	EF-hand-like domain	IPR011992	-	8.71457e-23	67%
Blast2go	EF-Hand 1, calcium-binding site	IPR018247	-	8.71457e-23	67%
Blast2go	EF-hand	IPR018248	-	8.71457e-23	67%
Blast2go	EF-HAND 2	IPR018249	-	8.71457e-23	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q06827

Fln msg: your sequence is longer than subject: 321 - 168

Fln protein: MKTKRLVAVEDSDEAATSSSEKEENSEELKGRGDKGKGKLASSSATITEYERQRQQRIEENRAKLQALRLPVLASSLSKNSNKKLKKTTSQKGKVKLDNDYQPSTEDEQSESSSDEDAEHKVPTPKKATPAKRRPPGRPKSKKMKSLNSLIVDKASEEHGWTDLQQNELDDDAALQQALALSMGASMEDATAIAEASKQDSDVGRPKAKVDNSELGGKAQETAKVDKLPRGRRQRKQTKSINTIQLSEDEVLAYFFLFDEAGKGKISMRDLERVALTHDFTWSKQELNEMINTFDKDCDGQLSLEDFQTIVARCNMIGGS*

Protein Length: 322

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATAGCATATACATACCTGATTGAAACACTCCCACCACCCACACTGAACACAAAATCTAACAAAAGCTCATTGATTCACACAACTCTCCTTTTCTACTCGCAGTAGTGAACTGTCTTATGATCTGCAAGATTTCTATGTGCCCAGGAGAAATTGACCTTATTCGGAATTGAAATGGGTCTGCCCAAGATCATGTCGGAGAATTGAGGTGGGTTATTGCGGGAGCA_-_ATGAAGACCAAGCGGTTGGTTGCTGTAGAGGATAGCGATGAAGCAGCTACGTCTTCTTCAGAAAAAGAAGAGAACTCGGAGGAATTGAAGGGCAGAGGAGACAAAGGTAAGGGCAAACTGGCTTCTTCTTCTGCAACCATAACAGAATATGAAAGACAGAGACAACAAAGAATTGAGGAGAACAGAGCAAAGCTACAAGCCCTTCGTTTACCAGTACTTGCATCATCCCTCTCAAAAAACAGCAACAAAAAGCTGAAAAAAACCACTTCCCAAAAGGGTAAAGTCAAACTGGATAATGACTATCAGCCCTCCACAGAAGATGAACAGTCCGAGTCCTCTAGTGATGAGGACGCGGAACACAAAGTGCCGACGCCGAAGAAGGCAACCCCTGCAAAACGAAGGCCTCCTGGACGCCCAAAGAGCAAGAAAATGAAGTCTCTTAATTCTTTAATCGTGGATAAAGCTTCTGAAGAGCATGGATGGACTGATTTACAACAGAATGAATTGGACGATGACGCTGCTTTACAACAGGCTCTGGCACTTTCCATGGGGGCTTCTATGGAAGACGCAACTGCTATAGCAGAAGCATCAAAACAAGATTCAGATGTTGGGAGACCAAAAGCAAAAGTAGACAATTCTGAGCTTGGTGGAAAGGCACAGGAAACAGCCAAGGTTGACAAACTTCCCCGTGGCAGAAGACAAAGAAAGCAAACAAAGAGCATCAACACGATACAGCTATCCGAAGATGAAGTTCTTGCATATTTCTTTTTATTCGATGAAGCAGGCAAGGGGAAAATTTCAATGCGAGACTTGGAGAGAGTTGCACTAACCCATGATTTTACATGGAGCAAACAGGAGTTAAATGAAATGATCAACACTTTTGACAAGGATTGCGATGGACAGCTAAGCCTTGAGGACTTCCAGACAATAGTCGCTCGATGCAATATGATTGGTGGCTCTTAA___GCAATTATACTCTTGGAAACTTGTAGTTATTGCTATAATTTATTTGAGTTGTACATTTCTCCATGCCAGCCATCCTCATGTTCCTCTTTTTTATCGTGTATTGGTAAGAGCACATGCGCACACAGAGAGATATAGCTGCCTACTACATCTATTTGAAGTGTTGCATAAAATCTTTAAGGGCAAGTGTTTTGGACCAAAGTGGGAAGATATAGAAGCACCTTAAATATGAGTTTGCCAGATGGGTGTTTTTCTAAATGCACAGAAATGGAAAATTCTTTGCTGTTGGATGAAGTCTCTATGCCAAATTTCAATTTGCAGATGTGAAAGGACATCTCTGATTGTAGGAGAATCAGTTAGAAATGCATGAAGGGTGTTGTATGAAGACACATAGTATCAAGGAAGCATCTTTTACCACGTCAGCTGCATATTTATAAATCAGTACATGATTGATCATTGCACTGCCTTTTCAGCAAGAAAGAATTTGTTCTAGCTTTCCTTCCTCGATGCACTAACAAATATCTTGACAAAACTGGCCAAAGAATGTTACATCTTGAGACTTTAGTTCTTATGTTTGATAAATCTAAATCAATATAGG

Fln Alignment:

sp_v1.1_unigene971___SEDEVLAYFFLFDEAGKGKISMRDLERVALTHDFTWSKQELNEMINTFDKDCDGQLSLEDFQTIVARCNM
Q06827_____________SREEIMKAFRLFDDDETGKISFKNLKRVAKELGENMTDEELQEMIDEADRDGDGEVNEEEFFRIMKKTSL

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1192	11	88			0.923564
1193	88	11			0.923564
1194	88	11			0.923564
1196	88			11	0.923564
1197			11	88	0.923564
1199	88	11			0.923564
1202	12		87		0.992554
1203		12	87		0.992554
1205	12		87		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain