SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene964

Length: 3067 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene964
ATGGGGAAGCGGAGGACTCGCTTGTCAACAAACTTTACTTGCAGGACAAGGCTACAGCTCTGTCTTCACTCCTTATATGGTGGCAACATTTGGAAGAGGAATTGGAGTTGGAATTGACAAGGGCGGGTTGATCGATCGGTGTTAATGTCTCGGAGGCAATCTGCGGTTCTGGCTAAACCAGCATGGCGTGGCCTGGCATATGCATTTCACACATTTAATATGTCACCACTAGGGCGAAACACCAAGCTGGCCAGTCAAGCCACAAGAAAGTCTAGCTCTTATGGTGATGTTTCAAAGATTAGCTTGTTGAGAACTTTCTTACAGGAAGTGGGCTTGTTGGATCTGGGCTGCCGTAATGGTGCTTTGGCTACAAATAGCTCGAGCTACTCGAGAAATATTTCCCTTGGCATTGGTTCTTGCAAGGGCACAATGAGCAATGCAATTTTGCCTAAACATCCATTACAAAATATAGTCCTTCGCAGATTATTCTCAAGCAAGCCTTCAGGGAAAAAATATGAAAATTTTTATCCAAAAGGCAAGAAGGAGGTTCCAAAGGGGCGAGAGGGGCAAAAGCCAGAGTCTAGAACTGAAGACTCAAAGTCTGAAGACCCAAAGAGCTTTTATGAAGTATCTATCAAGCAATTTCAGCATTATTTCTTGCTAACAGTGGGTGTTGCTGCAATCCTCACAACATTGAGTTTCGGCCGTCATGATAAACAACAGATCAGCTTTCAAGAGTTTAAGAATAAGCTGCTAGAGCCTGGTTTGGTGGATCACATTGAAGTTTCTAACAAATCTGTGGCAAAAGTTTATGTTAAGAATGTGCCTCATCCTATTTCTCAAGATGAAAATATTGATGTAGATACTGAAATTCATCCTAATGCTAGCAGAAGCAATGGTAGCCAGTACAAGTTTTATTTCAACATTGGGAGTGTTGATTCTTTCGAGCGCAAATTGGAAGAATCTCAGGAGGACTTGGGAATAGATCCACATGATTATGTTCCAGTTACATACATATCAGAATTGTCCTGGCTACAGGAAGTACTGTCCTTGATACCTACAGCTCTTGTTATTGGAACACTTGTTTACCTAAATCGCAAAGCTCTAGGGGGATCTGGTCTAGGGGGAGGTGGCGGATCACGTAGCATATTCAGTGTTGGGAAAGCTCATGTTTCAAAACTCGATAAGAATTCAAAGGATAAGGTGTTATTCAAAGATGTGGCTGGGTGTGACGAAGCTAAACAAGAAATTATGGAGTTTGTTCACTTCCTGAAGAATCCAAAAAAGTATCAAGAATTAGGTGCCAAGATCCCTAAAGGAGCACTCTTAGTCGGTCCTCCTGGCACCGGTAAAACACTTCTTGCAAAGGCTGTGGCTGGCGAATCTTCAGTCCCCTTTCTTTCCATATGTGGTTCCGATTTTATGGAAATGTTTGTTGGTGTCGGGCCTTCTCGGGTGAGAGATTTGTTTGCTCAAGCAAGGCGATCTTCACCTAGTATTGTCTTTATTGATGAAATAGATGCAATTGGTCGTGCAAGAGGTCGTGGCATGCTTGGAGGAAATGATGAAAGGGAGAGCACGCTTAATCAGTTACTTGTAGAGATGGATGGATTTGGAACAACAGCTGGAGTGGTAGTTCTTGCAGGCACCAACCGTCCTGATATACTGGATAAAGCACTTCTAAGACCTGGCCGATTTGACCGCCAAATTTCCATTGAGAAACCAGATATAAATGGCAGGGAACAAATATTTATGTTATACTTACAAAAACTAAAGCTTGATCAAGCACCGCCATTTTATTCTCAGCGGTTGTCTGCATTAACTCCTGGGTTTGCCGGTGCTGACATTCAGAATGTTTGTAATGAAGCGGCTCTTATAGCTGCAAGGCATGATGAGAAGCAGATAACAATGGATCATTTTGAGGCTGCCATTGATCGAATTATTGGTGGATTAGAGAAGAAAAATAAGGTTATTAGCAAGGAAGAAAGGAGAACTGTTGCATACCATGAATCTGGACATGCAGTGGCTGGTTGGTTCCTGGAGCATGCGGAGCCCCTTTTGAAGGTTACAATTGTTCCTCGTGGCACTGCGGCTTTAGGGTTTGCACAGTATGTACCGAATGAAAACTTACTTATGACAAAAGAACAACTGTTTGATATGACATGCATGACTCTTGGAGGGAGAGCTGCAGAGCAAGTTATGCTGGGAAAAATATCAACCGGTGCTCAAAATGACCTAGAGAAGGTTACGAAAATGACCTATGCTCAAGTTGCAGTGTATGGATTCAGTGAGAAAGTGGGTCTTGTCTCTTTTCCTCAGAGAGAAGATGGGTTTGAGGGTACAAAACCATACAGTAATCAGACATCAGAGATCATTGATAGGGAAGTCCGTGAATGGGTAGATAAGGCTTACAAGCGCACAACAGAAATAATAGAAAAACATCGAGATGGTGTGGAGCAGCTAGCTAAATCACTGCTTGAGAAAGAAGTTTTGCATCAGGAGGACTTGGCCCAGATTTTAGGTGAGCGACCTTTTATTCCTTCAGAGCGCACCAATTATGATATTTTTAAGAAAGGTTTTCAGCAGCTGGATAAAAATGAAGATGCAGAGGAGGAAGCATCTCCATCTGCAGAACAGGAGGGTACCCCTGTCCTGGTTTAAGATGGGATTCTTCTGCATTTTCAAGCTAGGAATCAACCATGTCTTTAGATGTATCTATTGTATCTAAATCCCGAAGTTAGTTTTTGCGAGATTTGTTTTAATCAACCTATCCCATTATAGGCTACCACCATTTTCCGTGTCTTTTGATGTTAGCTATCAATCACTGTTTCTCATCTCTAAAGTTTTTCATAGATTGTATATGCGGGCTTGTAAGCTTAATGTCCGGGGAGTTGAGGTTTATGATATTATGCCCGACCTAAAAGAAAAATCATTTCCAGATGAGAAGCCATGCTTCTTGTAACAGCAAGAACATGCTTGGCCGTTGTAAAATGGTGACACAGATTGGCATGGAAAAGAAAATAAAGGCAGGGAAATCAACGCCTGATCACGTTACATATTCTTTTCG

Ace file of the UniGene sp_v1.1_unigene964 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Mitochondrial respiratory chain complexes assembly protein AFG3, putative (EC:3.6.4.3); K08956 AFG3 family protein [EC:3.4.24.-]	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	45%
Blast2go	protein	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Nucleoside-triphosphatase.	EC:3.6.1.15	-	0.0	81%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	81%
Blast2go	Thiamine metabolism	00730	81%
Blast2go	Metabolic pathways	01100	81%

Source	ECs	Term	Type	e value	Identity
AutoFact	Hydrolases, Acting on peptide bonds (peptide hydrolases), Metalloendopeptidases.	EC:3.4.24.-	-	0.0	70%

Source	GOs	Term	Type	Identity
Blast2go	peptidase activity	GO:0008233	Molecular Function	81%
Blast2go	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	81%
Blast2go	plastid	GO:0009536	Cellular Component	81%
Blast2go	mitochondrion	GO:0005739	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Blast2go	Peptidase M41	IPR000642	-	81%
Blast2go	AAA+ ATPase domain	IPR003593	-	81%
Blast2go	ATPase, AAA-type, core	IPR003959	-	81%
Blast2go	ATPase, AAA-type, conserved site	IPR003960	-	81%
Blast2go	Peptidase, FtsH	IPR005936	-	81%
Blast2go	Peptidase M41, FtsH extracellular	IPR011546	-	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQ75

Fln msg: your sequence is longer than subject: 839 - 695

Fln protein: MSRRQSAVLAKPAWRGLAYAFHTFNMSPLGRNTKLASQATRKSSSYGDVSKISLLRTFLQEVGLLDLGCRNGALATNSSSYSRNISLGIGSCKGTMSNAILPKHPLQNIVLRRLFSSKPSGKKYENFYPKGKKEVPKGREGQKPESRTEDSKSEDPKSFYEVSIKQFQHYFLLTVGVAAILTTLSFGRHDKQQISFQEFKNKLLEPGLVDHIEVSNKSVAKVYVKNVPHPISQDENIDVDTEIHPNASRSNGSQYKFYFNIGSVDSFERKLEESQEDLGIDPHDYVPVTYISELSWLQEVLSLIPTALVIGTLVYLNRKALGGSGLGGGGGSRSIFSVGKAHVSKLDKNSKDKVLFKDVAGCDEAKQEIMEFVHFLKNPKKYQELGAKIPKGALLVGPPGTGKTLLAKAVAGESSVPFLSICGSDFMEMFVGVGPSRVRDLFAQARRSSPSIVFIDEIDAIGRARGRGMLGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQISIEKPDINGREQIFMLYLQKLKLDQAPPFYSQRLSALTPGFAGADIQNVCNEAALIAARHDEKQITMDHFEAAIDRIIGGLEKKNKVISKEERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLMTKEQLFDMTCMTLGGRAAEQVMLGKISTGAQNDLEKVTKMTYAQVAVYGFSEKVGLVSFPQREDGFEGTKPYSNQTSEIIDREVREWVDKAYKRTTEIIEKHRDGVEQLAKSLLEKEVLHQEDLAQILGERPFIPSERTNYDIFKKGFQQLDKNEDAEEEASPSAEQEGTPVLV*

Protein Length: 840

Fln nts: ATGGGGAAGCGGAGGACTCGCTTGTCAACAAACTTTACTTGCAGGACAAGGCTACAGCTCTGTCTTCACTCCTTATATGGTGGCAACATTTGGAAGAGGAATTGGAGTTGGAATTGACAAGGGCGGGTTGATCGATCGGTGTTA_-_ATGTCTCGGAGGCAATCTGCGGTTCTGGCTAAACCAGCATGGCGTGGCCTGGCATATGCATTTCACACATTTAATATGTCACCACTAGGGCGAAACACCAAGCTGGCCAGTCAAGCCACAAGAAAGTCTAGCTCTTATGGTGATGTTTCAAAGATTAGCTTGTTGAGAACTTTCTTACAGGAAGTGGGCTTGTTGGATCTGGGCTGCCGTAATGGTGCTTTGGCTACAAATAGCTCGAGCTACTCGAGAAATATTTCCCTTGGCATTGGTTCTTGCAAGGGCACAATGAGCAATGCAATTTTGCCTAAACATCCATTACAAAATATAGTCCTTCGCAGATTATTCTCAAGCAAGCCTTCAGGGAAAAAATATGAAAATTTTTATCCAAAAGGCAAGAAGGAGGTTCCAAAGGGGCGAGAGGGGCAAAAGCCAGAGTCTAGAACTGAAGACTCAAAGTCTGAAGACCCAAAGAGCTTTTATGAAGTATCTATCAAGCAATTTCAGCATTATTTCTTGCTAACAGTGGGTGTTGCTGCAATCCTCACAACATTGAGTTTCGGCCGTCATGATAAACAACAGATCAGCTTTCAAGAGTTTAAGAATAAGCTGCTAGAGCCTGGTTTGGTGGATCACATTGAAGTTTCTAACAAATCTGTGGCAAAAGTTTATGTTAAGAATGTGCCTCATCCTATTTCTCAAGATGAAAATATTGATGTAGATACTGAAATTCATCCTAATGCTAGCAGAAGCAATGGTAGCCAGTACAAGTTTTATTTCAACATTGGGAGTGTTGATTCTTTCGAGCGCAAATTGGAAGAATCTCAGGAGGACTTGGGAATAGATCCACATGATTATGTTCCAGTTACATACATATCAGAATTGTCCTGGCTACAGGAAGTACTGTCCTTGATACCTACAGCTCTTGTTATTGGAACACTTGTTTACCTAAATCGCAAAGCTCTAGGGGGATCTGGTCTAGGGGGAGGTGGCGGATCACGTAGCATATTCAGTGTTGGGAAAGCTCATGTTTCAAAACTCGATAAGAATTCAAAGGATAAGGTGTTATTCAAAGATGTGGCTGGGTGTGACGAAGCTAAACAAGAAATTATGGAGTTTGTTCACTTCCTGAAGAATCCAAAAAAGTATCAAGAATTAGGTGCCAAGATCCCTAAAGGAGCACTCTTAGTCGGTCCTCCTGGCACCGGTAAAACACTTCTTGCAAAGGCTGTGGCTGGCGAATCTTCAGTCCCCTTTCTTTCCATATGTGGTTCCGATTTTATGGAAATGTTTGTTGGTGTCGGGCCTTCTCGGGTGAGAGATTTGTTTGCTCAAGCAAGGCGATCTTCACCTAGTATTGTCTTTATTGATGAAATAGATGCAATTGGTCGTGCAAGAGGTCGTGGCATGCTTGGAGGAAATGATGAAAGGGAGAGCACGCTTAATCAGTTACTTGTAGAGATGGATGGATTTGGAACAACAGCTGGAGTGGTAGTTCTTGCAGGCACCAACCGTCCTGATATACTGGATAAAGCACTTCTAAGACCTGGCCGATTTGACCGCCAAATTTCCATTGAGAAACCAGATATAAATGGCAGGGAACAAATATTTATGTTATACTTACAAAAACTAAAGCTTGATCAAGCACCGCCATTTTATTCTCAGCGGTTGTCTGCATTAACTCCTGGGTTTGCCGGTGCTGACATTCAGAATGTTTGTAATGAAGCGGCTCTTATAGCTGCAAGGCATGATGAGAAGCAGATAACAATGGATCATTTTGAGGCTGCCATTGATCGAATTATTGGTGGATTAGAGAAGAAAAATAAGGTTATTAGCAAGGAAGAAAGGAGAACTGTTGCATACCATGAATCTGGACATGCAGTGGCTGGTTGGTTCCTGGAGCATGCGGAGCCCCTTTTGAAGGTTACAATTGTTCCTCGTGGCACTGCGGCTTTAGGGTTTGCACAGTATGTACCGAATGAAAACTTACTTATGACAAAAGAACAACTGTTTGATATGACATGCATGACTCTTGGAGGGAGAGCTGCAGAGCAAGTTATGCTGGGAAAAATATCAACCGGTGCTCAAAATGACCTAGAGAAGGTTACGAAAATGACCTATGCTCAAGTTGCAGTGTATGGATTCAGTGAGAAAGTGGGTCTTGTCTCTTTTCCTCAGAGAGAAGATGGGTTTGAGGGTACAAAACCATACAGTAATCAGACATCAGAGATCATTGATAGGGAAGTCCGTGAATGGGTAGATAAGGCTTACAAGCGCACAACAGAAATAATAGAAAAACATCGAGATGGTGTGGAGCAGCTAGCTAAATCACTGCTTGAGAAAGAAGTTTTGCATCAGGAGGACTTGGCCCAGATTTTAGGTGAGCGACCTTTTATTCCTTCAGAGCGCACCAATTATGATATTTTTAAGAAAGGTTTTCAGCAGCTGGATAAAAATGAAGATGCAGAGGAGGAAGCATCTCCATCTGCAGAACAGGAGGGTACCCCTGTCCTGGTTTAA___GATGGGATTCTTCTGCATTTTCAAGCTAGGAATCAACCATGTCTTTAGATGTATCTATTGTATCTAAATCCCGAAGTTAGTTTTTGCGAGATTTGTTTTAATCAACCTATCCCATTATAGGCTACCACCATTTTCCGTGTCTTTTGATGTTAGCTATCAATCACTGTTTCTCATCTCTAAAGTTTTTCATAGATTGTATATGCGGGCTTGTAAGCTTAATGTCCGGGGAGTTGAGGTTTATGATATTATGCCCGACCTAAAAGAAAAATCATTTCCAGATGAGAAGCCATGCTTCTTGTAACAGCAAGAACATGCTTGGCCGTTGTAAAATGGTGACACAGATTGGCATGGAAAAGAAAATAAAGGCAGGGAAATCAACGCCTGATCACGTTACATATTCTTTTCG

Fln Alignment:

sp_v1.1_unigene964___LVIGTLVYLNRKAXXXXXXXXXXXSRSIFSVGKAHVSKLDKNSKDKVLFKDVAGCDEAKQEIMEFVHFLKNPKKYQELGAKIPKGALLVGPPGTGKTLLAKAVAGESSVPFLSICGSDFMEMFVGVGPSRVRDLFAQARRSSPSIVFIDEIDAIGRARGRGMLGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQISIEKPDINGREQIFMLYLQKLKLDQAPPFYSQRLSALTPGFAGADIQNVCNEAALIAARHDEKQITMDHFEAAIDRIIGGLEKKNKVISKEERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNEN-LLMTKEQLFDMTCMTLGGRAAEQVMLG--KISTGAQNDLEKVTKMTYAQVAVYGFSE--KVGLVSFPQRED---GFEGTKPYSNQTSEIIDREVREWVDKAYKRTTEIIEKHRDGVEQLAKSLLEKEVLHQEDLAQILGERPFIP
C0PQ75_____________ILVGGLFLLSRRSSGGMGGPGGPGFPLSFGQSKA---KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGIGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDAALLRPGRFDRQVSVDVPDVKGRTEILKVHGGNKKFDSDVSL--GVIAMRTPGFSGADLANLLNEAAILAGRRGRSAISAKEIDDSIDRIVAGMEGTIMTDGK-NKSLVAYHEVGHAICGTLTPGHDAVQKVTLIPRGQAR-GLTWFIPGDDPTLISRQQLFARIVGGLGGRAAEQVIFGESEVTTGAASDLQMVTSMAKQMVTVFGMSEIGPWSLMDAAQSGDVIMRMMARNSMSEKLAEDIDEAVKSLSDQAYEVALGHIRNNRAAIDKIVEVLLEKETMTGDEFRALLSEFIEIP

SNPs (tot: 49)

Position	A %	C %	G %	T %	Probability
2376			76	23	1.0
2377			23	76	1.0
2378	23			76	1.0
2384		23	76		1.0
2387			23	76	1.0
2388		23	76		1.0
2391	23		76		1.0
2392		76	23		1.0
2393	75		25		1.0
2394	75			25	1.0
2399		76	23		1.0
2437	87			12	0.992554
2438			12	87	0.992554
2440		87	12		0.992554
2442	12			87	0.992554
2445			12	87	0.992554
2446	87	12			0.992554
2447	87	12			0.992554
2451		87	12		0.992554
2454	14			85	0.993533
2455		14		85	0.993533
2456			14	85	0.993533
2457	14		85		0.993533
2458		14	85		0.993533
2589		75		25	0.996473
2592	75		25		0.996473
2593			75	25	0.996473
2599			25	75	0.996473
2600	75	25			0.996473
2601		33		66	0.997452
2602	33			66	0.997452
2603	33			66	0.997452
2604			33	66	0.997452
2607	66	33			0.997452
2610		33	66		0.997452
2613		20		80	0.995493
2797	85		14		0.993533
2818		57	42		1.0
2967	80		20		0.995493
2969			20	80	0.995493
2972		80	20		0.995493
2973	20			80	0.995493
2975	33			66	0.997452
2976			33	66	0.997452
2982			33	66	0.997452
2985		33		66	0.997452
2986	33		66		0.997452
2988		66	33		0.997452
2991		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain