SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene961

Length: 888 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene961 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Exosome complex exonuclease rrp45, putative n=1 Tax=Ricinus communis RepID=B9SYQ9_RICCO	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	26%
Blast2go	nucleolar autoantigen-like protein	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	wax biosynthetic process	GO:0010025	Biological Process	85%
Blast2go	3'-5'-exoribonuclease activity	GO:0000175	Molecular Function	85%
Blast2go	cytoplasm	GO:0005737	Cellular Component	85%
Blast2go	nucleus	GO:0005634	Cellular Component	85%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Exoribonuclease, phosphorolytic domain 1	IPR001247	-	0.0	85%
Blast2go	Ribosomal protein S5 domain 2-type fold	IPR020568	-	0.0	85%

Full-Lengther Next Prediction

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
693	11	88			0.999937
706		83	5	11	0.999887
767			84	15	0.999986
772	8	58	33		1.0
786	81	18			0.999994
787	90		10		0.90298
799	28			57	1.0
801	85			14	0.993533
803		14	85		0.993533
804	42	14			1.0
805		14	85		0.993533
806		14		85	0.993533
807		14	85		0.993533
809		85		14	0.993533
810	50		50		1.0
812		50		50	1.0
813		50	50		1.0
818	50		50		1.0
826	60			40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain