SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene960

Length: 2131 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene960
ATGGGGGAAGTCAAACTACTTCGACCTTTCTGGTCGATTAAGAACGTCGTGTTCTTGGCGTCTTCATATTAATGGCGGTGCTTCTCTCTTTCCAAACTGTCTGCCCTCTATGCCCCTCCACCTCTCAGCCCCTCTGGACTGCGACACACGCGAAACTCAGTCCCCCGGACCGCTTTTCCCCGCCACATGACCGCAATTCCTATGCTCCCGCTCGCTGCAACTCCATGGCCGTCGGTCACATGCTAGCCCGGAGATTTGGCCTACCTCTACTAAACAAAGCCGTATCCAGCCGCAGGGCCATCACCACACAGAGGTTCCCCAGGGCTCGAACTGTCGCTCTAGCGGCCTGGAAGCAGGAGGTTCTATGGGCGGAGGCCCCGCTGGTGGAGGTTGAGAGGGCGGCCGAGAGCCTGTACCATGTGGTTTTAGATATCAGCGACAATCCGGATCTCATGGAGGGGCACACAACCCCAGGGCAGTTCGTGCAGGTTAGGGTTGGAGATAGCAAACCTGCGTTTCTAGCGATAGCTTCACCGCCCGCTACATCTAGCGGAGGTTCTCTAGAGTTTTTGATTAAGTATGTCGAGGGATCCACGGCAGGGTCTCTGTGCAATCTTCGTAAAGGGGATACGGTAGAGTTGAGTCAGGTTTTAGGCAATGGTTTCGATATTCGCCAAATTTCGCCCCCCGAGAAGTATTCAACAGTTTTACTTTTTGCTACCGGCTCTGGCATCAGCCCCATTCGCTCACTTTTGGAATCTGGATTAGAAGCGAGCAAGAGATCTGATGTGACACTTTATTATGGGGCCCGTAATCTTCAAAGGATGGCTTACCAGGAAAGATTTAAGGAATGGGAATCATCTGGGGTGAAAATAGTTCCTGTTTTATCTCAACCTGATGATTATTGGACTGGAGAACAAGGTTATGTACAGGAGGCATTTGCCAGAGCCAAACAAATACAAAATCCTTCAGCCAGTGGTGCAGTCTTATGCGGGCACAACGGGATGGCAGAGGATGTTACGTCCCTTCTTGCATCAAATGGTGTATCAAAGGAAAGGATCCTGAAAAACTTTTAGTAATTTGCAAGATACACATTTTTGGAGATTGAGCAGTCACAGTTCGGAATTAAATACATTCTTTAAATAATACTTGGATACTTCTCCAGGGAAGGAATACTTTCTTTTGCAATTATGCTGTGCATGTTGTACCGAGTCATTTATTTTCTTCCAAAAGATCTGAAGCAATGAAAAATGGACCTGTAAATCTACAGATGTTCTATTACCAGTTCAGTTCAAGCACAATAATGCAGTCTACCGAAGGATATGTCCTCCCTCCGTTGTGCACAAAATCCTTTGCTTAGTTCTAGCACCTGATTTCCATATTAATGAAGGGTGGAATTGCCCTGCCACATTTAGTTTTCAGGAAAAATGATTTATTTGGTCATCTTGCCTGATCAATTTATTCAATGTTTTAGGTCTCTGTTAGTTTTAATTTATTATGTCGTATGTCAACAGCCAACGTCAGAAGCATTTGGTTCTTCTGAATTGTTCATTGATTTGATGTTCTCCACCATCTTTTTACATCAGAGGTTACATTGTTCTCGGCAAAAATTTATTGGATGGAGTTTCGGCCAAAAGCTGGCACGATGTAACATTGCCGGTTATTTTGTTCTAACCTTAGTTTTCAGTAATAATTACGTGCATCGGTGCTCTTATTGTATCAGTCTTTGTGCTTCATTTTGTAAGGCACGCCTTGTAAGGGCACTTCGTACAATTTTTTAAGTTCTAACAAGGGTAAACCGAATCACGAGTTATGTTGTCACAAGTGAAGTTCTTTCCCAGGCTCATCTTGTCGCTGCTCGACTTCAGTTGACTATGTTGTTGCGGTTATCTGTATTCTGAAACAACACGAGTTTGTTGTGAAGCAAATAAAAAGCCGTCTTTCATGGGTATGCTACATACCAGAGATCGTTAATTTTATTATGTTACACACAGAAACACAGTTTATAATTGAGTGTTTAAGAATGAATCCAAGAATTTACCAGTGATACTGCAATAATCAGTGCACACAATGTGACATTTCGAGGTGAACAAGAAAACTGATATATCCATTTGAGGTTTGGCTGGAAAGT

Ace file of the UniGene sp_v1.1_unigene960

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Fruit protein PKIWI502, putative n=1 Tax=Ricinus communis RepID=B9T1V7_RICCO	-	-	65%
FL-Next	sp=Fruit protein pKIWI502; Actinidia deliciosa (Kiwi).	-	-	48%
Blast2go	oxidoreductase nad-binding domain-containing protein	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	copper ion binding	GO:0005507	Molecular Function	75%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	75%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	75%
Blast2go	thylakoid	GO:0009579	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Blast2go	Phenol hydroxylase reductase	IPR001221	-	75%
Blast2go	Oxidoreductase FAD/NAD(P)-binding	IPR001433	-	75%
Blast2go	Ferredoxin reductase-type FAD-binding domain	IPR017927	-	75%
Blast2go	Riboflavin synthase-like beta-barrel	IPR017938	-	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P43394

Fln msg:

Fln protein: MAVLLSFQTVCPLCPSTSQPLWTATHAKLSPPDRFSPPHDRNSYAPARCNSMAVGHMLARRFGLPLLNKAVSSRRAITTQRFPRARTVALAAWKQEVLWAEAPLVEVERAAESLYHVVLDISDNPDLMEGHTTPGQFVQVRVGDSKPAFLAIASPPATSSGGSLEFLIKYVEGSTAGSLCNLRKGDTVELSQVLGNGFDIRQISPPEKYSTVLLFATGSGISPIRSLLESGLEASKRSDVTLYYGARNLQRMAYQERFKEWESSGVKIVPVLSQPDDYWTGEQGYVQEAFARAKQIQNPSASGAVLCGHNGMAEDVTSLLASNGVSKERILKNF*

Protein Length: 336

Fln nts: ATGGGGGAAGTCAAACTACTTCGACCTTTCTGGTCGATTAAGAACGTCGTGTTCTTGGCGTCTTCATATTA_-_ATGGCGGTGCTTCTCTCTTTCCAAACTGTCTGCCCTCTATGCCCCTCCACCTCTCAGCCCCTCTGGACTGCGACACACGCGAAACTCAGTCCCCCGGACCGCTTTTCCCCGCCACATGACCGCAATTCCTATGCTCCCGCTCGCTGCAACTCCATGGCCGTCGGTCACATGCTAGCCCGGAGATTTGGCCTACCTCTACTAAACAAAGCCGTATCCAGCCGCAGGGCCATCACCACACAGAGGTTCCCCAGGGCTCGAACTGTCGCTCTAGCGGCCTGGAAGCAGGAGGTTCTATGGGCGGAGGCCCCGCTGGTGGAGGTTGAGAGGGCGGCCGAGAGCCTGTACCATGTGGTTTTAGATATCAGCGACAATCCGGATCTCATGGAGGGGCACACAACCCCAGGGCAGTTCGTGCAGGTTAGGGTTGGAGATAGCAAACCTGCGTTTCTAGCGATAGCTTCACCGCCCGCTACATCTAGCGGAGGTTCTCTAGAGTTTTTGATTAAGTATGTCGAGGGATCCACGGCAGGGTCTCTGTGCAATCTTCGTAAAGGGGATACGGTAGAGTTGAGTCAGGTTTTAGGCAATGGTTTCGATATTCGCCAAATTTCGCCCCCCGAGAAGTATTCAACAGTTTTACTTTTTGCTACCGGCTCTGGCATCAGCCCCATTCGCTCACTTTTGGAATCTGGATTAGAAGCGAGCAAGAGATCTGATGTGACACTTTATTATGGGGCCCGTAATCTTCAAAGGATGGCTTACCAGGAAAGATTTAAGGAATGGGAATCATCTGGGGTGAAAATAGTTCCTGTTTTATCTCAACCTGATGATTATTGGACTGGAGAACAAGGTTATGTACAGGAGGCATTTGCCAGAGCCAAACAAATACAAAATCCTTCAGCCAGTGGTGCAGTCTTATGCGGGCACAACGGGATGGCAGAGGATGTTACGTCCCTTCTTGCATCAAATGGTGTATCAAAGGAAAGGATCCTGAAAAACTTTTAG___TAATTTGCAAGATACACATTTTTGGAGATTGAGCAGTCACAGTTCGGAATTAAATACATTCTTTAAATAATACTTGGATACTTCTCCAGGGAAGGAATACTTTCTTTTGCAATTATGCTGTGCATGTTGTACCGAGTCATTTATTTTCTTCCAAAAGATCTGAAGCAATGAAAAATGGACCTGTAAATCTACAGATGTTCTATTACCAGTTCAGTTCAAGCACAATAATGCAGTCTACCGAAGGATATGTCCTCCCTCCGTTGTGCACAAAATCCTTTGCTTAGTTCTAGCACCTGATTTCCATATTAATGAAGGGTGGAATTGCCCTGCCACATTTAGTTTTCAGGAAAAATGATTTATTTGGTCATCTTGCCTGATCAATTTATTCAATGTTTTAGGTCTCTGTTAGTTTTAATTTATTATGTCGTATGTCAACAGCCAACGTCAGAAGCATTTGGTTCTTCTGAATTGTTCATTGATTTGATGTTCTCCACCATCTTTTTACATCAGAGGTTACATTGTTCTCGGCAAAAATTTATTGGATGGAGTTTCGGCCAAAAGCTGGCACGATGTAACATTGCCGGTTATTTTGTTCTAACCTTAGTTTTCAGTAATAATTACGTGCATCGGTGCTCTTATTGTATCAGTCTTTGTGCTTCATTTTGTAAGGCACGCCTTGTAAGGGCACTTCGTACAATTTTTTAAGTTCTAACAAGGGTAAACCGAATCACGAGTTATGTTGTCACAAGTGAAGTTCTTTCCCAGGCTCATCTTGTCGCTGCTCGACTTCAGTTGACTATGTTGTTGCGGTTATCTGTATTCTGAAACAACACGAGTTTGTTGTGAAGCAAATAAAAAGCCGTCTTTCATGGGTATGCTACATACCAGAGATCGTTAATTTTATTATGTTACACACAGAAACACAGTTTATAATTGAGTGTTTAAGAATGAATCCAAGAATTTACCAGTGATACTGCAATAATCAGTGCACACAATGTGACATTTCGAGGTGAACAAGAAAACTGATATATCCATTTGAGGTTTGGCTGGAAAGT

Fln Alignment:

sp_v1.1_unigene960___LWAEAPLVEV-ERAAESLYHVVLDISDNPDLMEGHTTPGQFVQVRVGDS------KPAFLAIASPPA-TSSGGSLEFLIKYVEGSTAGSLCNLRKGDTVELSQVLGNGFDIRQISPPEKYSTVLLFATGSGISPIRSLLESGLEASKRSDVTLYYGARNLQRMAYQERFKEWESSGVKIVPVLSQPDDYWTGEQGYVQEAFARAKQIQNPSASGAVLCGHNGMAEDVTSLLASNGVSKERIL
P43394_____________IWTPVPISRVLPAAAESLFKVIVDLSRSPDLVYNFVSPGQYVQIRIPEAIVNPPPRPAYFYIASPPSLVKKNLEFEFLIRSVPGTTSEVLCSLKEGDVVDLTQIIGRGFDIEQILPPEDYPTVLISVTGYGMSAGRSFIEEGFGANKRSDVRLYYGAENLETMGYQERFKDWEASGVRVIPVLSRPPPNWNGAVGYVQDVYLKDKPIADPRTTGAVLIGNPNMVEETRGILVAQGVSREKIL

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
626		12		87	0.992554
678		83		16	0.994512
869		16		83	0.994512
871			83	16	0.994512
872		16	83		0.994512
877	83	16			0.994512
878	83	16			0.994512
879	83			16	0.994512
881	83		16		0.994512
889		20		80	0.995493
890	20			80	0.995493
916		80	20		0.995493
925	80		20		0.995493
979		80	20		0.995493
1044	83			16	0.994512
1045	83	16			0.994512
1369	12	87			0.992554
1458		16	83		0.999991
1459	83		16		0.999991
1462	83		16		0.999991
1463	83			16	0.999991
1464			18	81	0.999994
1465	18			81	0.999994
1466		18		81	0.999994
1467	81	18			0.999994
1470		81	18		0.999994
1471	81		18		0.999994
1472	81	18			0.999994
1476		18		81	0.999994
1477	18			81	0.999994
1478		18		81	0.999994
1479	81			18	0.999994
1480		18	81		0.999994
1481	18		81		0.999994
1767			90	10	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain