SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene953

Length: 2571 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene953
TCTTCTTTGGTGCAATCCGTTGAAAACAAGGGAGATCGAGATCAGTCGCAAACATTTTTGTTCGTTACATGCTAATTTTGTTACATTATCGTGAAATGATAGAGTAATAGTCATATCCCGTTCTTTTGACTGGAATCTTGGTTATACCTGATTAAGGATTACAGTGCTACAAGCTCGGCCCTGCAGAAATGGCGAATCTGTTAAACTCCTCGTTGCTTTTACATCAACCGTCGCTTCCGCAGAGGCACAAAATAGCTTCAGGGCGCTCCACTGGGTGCATTGATACTGAAATCGGGTTTTTTCAGTCGAGAAAGACGTGCAGAAAATGTAACAGTGCCTCCTTTAAAGCGAGACAGAATTTGCACTGCAAAGCTCAAGCTCAGGATGGTGGCGTGTCTCAGAGAACTGGCAGGAATGCTAAAAAAACAGGGCTGGATCAGTCTGAAGTGCAACTTGATGCAGCTTCAAAGACTGGCACACAGACAGCTGCAGTTGGTGCAACTCCTTTTCCTGCACAACCACCACCAACGTACATAGGGTCACCGCTTCTATGGATAGGAGTTGGAGTTGGAATATCTGCTCTATTCTCTTGGGTGGCTAATAGTGTAAAGAGGTATGCAATGCAGCAGGTTTTCAAGACTATGATGGGCCAGGCAGCTTCAAACACTAGCCAGCCTGGTGGTATGCCTATGCCCCCAGGATCTGGTTTTCCATTTCCTCCATTTGCTACTTCTGAAACTAGCCAGCCTGGTGGTACGCCAATGTCTCCAGGATCTGGTTTTCCATTTCCTCCATTCCCTACTCCTGAAACTCCCTTGTCATCCACACCGACAGTTGATGTGACTGCAACCAATGTAATGACTGAATTTACTGAGGTCAATGGAGCAGTTGAAACAAAAGTGGAGCCCAAGAAGCCTGCATTTGTGGATGTTAGCCCGGAGGAAGTGTTAGATGAGAAACCTTATGTTGGAGCTCCACAAGATTCTACAGAGAAGAACATTCCTAAGGATTCAGAAGTTAAAACTCAGGCAGACGAGGGTGCGCCTGGTAAATCTTCTGATTTTACTGGAACAGCTGGTCCGATTCTAAGTGTAGAGGCCTTGGAGAAAATGATGGAAGATCCAGTAGTTCAGAAGATGGTCTATCCGTATTTGCCCCAAGAAATGCAGAATCCAACTACATTTAAATGGATGCTGCAAAATCCACAGTATCGTAAACAACTGGAGGATATGCTAAATGGCATGAGTGGAGATGCTGCATGGGACAACCGAATGATGGAATCATTGAAAAATTTTGACCTTAGCAGTCAAGAGGTTAAGCAACAATTTGAGCAAATAGGACTTACTCCAGAAGAGGTGGTGTCCAAAATTATGGCAAATCCTGATGTTGCTATGGCATTTCAGAATCCAAAAGTACAAGCTGCCATTATGGATTGCTCACAGAACCCTATGAGCATTACCAAATACCAAAATGATAAGGAGGTGATGGATGTCTTCAATAAAATTTCGGAGCTATTTCCAGGAATGACAGGTTCTCCTTGATAACGTCAAAGAAAAATCCAAGGCAAATGGACTGATTTTCAGGGCTTGGCACCAGTACTAGAATACGAGTTGGAAGAATAGCAATAGGTGAAATGTTATATGACACTAGAAAATTTTGTATAACAAAATGCGCTTGGATCATCCTTGAAATATATCGAGATGAACCAAAAGGCTTTTAGGGCATCTTCCTTTCTCAAATTTCGCTAGGGGTAAGCGTGATTGTGCTTTCTCTCACGAGTGCCCTTCACCATGTCTAGGAAGGTTATAATTCTAAGTTATTTTTCTTAGTCCGTGCGTTAAGAAATTAAGTGGGGTTAACAATGGAGAGCTTTTATTTTCTGGATGAGGAAGTTGGAGTTGGAACCTGCTTTACAAGGCAAGTTTAGGTAGACTTTGAAAAAGTCTTATGTGTATAATTATCATCTTGATTCTTCTAGAGATGGATGTTTAGCAGGAACTATATAGATTTGGATTGCATATTTGTTCCGAGTCTTCACCTAAAGATATATATTTTATTGGAGCATGGAGAATGGCATATGTTTGCACTATCCAACGCTCGAGGAATTAACAAAAAAAATATTGAATCTCCTCCACACTAGGAAAAATGCTTTGATAAATAAAGTGCCTGAATAAAAATGGTAGGATTTATAAATTTACGGCAACCAGAAAGAACTTTGGGAATAGCACGTTGATTTTTCTGAACACGCCTAATTATAATGAAAGAATGTTCCATATCTGTTTCCAAGTAATTAAACTATGGAGGCAGTTTTTTCAAATTGTCTGTTCAGGTTTACAGGCAATGTTGATGTCTTATGTACAAGATACAGTGTCAACCTGAGTAGAAATGGCTTTCCTATGACAATAGCATTATTAATTATATAAGACCAGCGGTTCACTGCTTCCTTAGCTTATGGCAGCAAGGTGGCATAGAAAAATCATTATTAATTGGCCACTGTATTCGTATTATGCATTCATTTGGGGATGTAAGTAGGGCAACTCCCGGTTTATGAATTCCTAGTTAAAATTTATT

Ace file of the UniGene sp_v1.1_unigene953

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	TIC40; TIC40	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	translocon tic40	-	-	65%

Source	GOs	Term	Type	Identity
Blast2go	protein import into chloroplast stroma	GO:0045037	Biological Process	65%
Blast2go	chloroplast organization	GO:0009658	Biological Process	65%
Blast2go	protein binding	GO:0005515	Molecular Function	65%
Blast2go	chloroplast inner membrane	GO:0009706	Cellular Component	65%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	65%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Heat shock chaperonin-binding	IPR006636	-	0.0	65%
Blast2go	26S proteasome complex ubiquitin receptor, subunit Rpn13	IPR006773	-	0.0	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLS2

Fln msg:

Fln protein: MANLLNSSLLLHQPSLPQRHKIASGRSTGCIDTEIGFFQSRKTCRKCNSASFKARQNLHCKAQAQDGGVSQRTGRNAKKTGLDQSEVQLDAASKTGTQTAAVGATPFPAQPPPTYIGSPLLWIGVGVGISALFSWVANSVKRYAMQQVFKTMMGQAASNTSQPGGMPMPPGSGFPFPPFATSETSQPGGTPMSPGSGFPFPPFPTPETPLSSTPTVDVTATNVMTEFTEVNGAVETKVEPKKPAFVDVSPEEVLDEKPYVGAPQDSTEKNIPKDSEVKTQADEGAPGKSSDFTGTAGPILSVEALEKMMEDPVVQKMVYPYLPQEMQNPTTFKWMLQNPQYRKQLEDMLNGMSGDAAWDNRMMESLKNFDLSSQEVKQQFEQIGLTPEEVVSKIMANPDVAMAFQNPKVQAAIMDCSQNPMSITKYQNDKEVMDVFNKISELFPGMTGSP*

Protein Length: 452

Fln nts: TCTTCTTTGGTGCAATCCGTTGAAAACAAGGGAGATCGAGATCAGTCGCAAACATTTTTGTTCGTTACATGCTAATTTTGTTACATTATCGTGAAATGATAGAGTAATAGTCATATCCCGTTCTTTTGACTGGAATCTTGGTTATACCTGATTAAGGATTACAGTGCTACAAGCTCGGCCCTGCAGAA_-_ATGGCGAATCTGTTAAACTCCTCGTTGCTTTTACATCAACCGTCGCTTCCGCAGAGGCACAAAATAGCTTCAGGGCGCTCCACTGGGTGCATTGATACTGAAATCGGGTTTTTTCAGTCGAGAAAGACGTGCAGAAAATGTAACAGTGCCTCCTTTAAAGCGAGACAGAATTTGCACTGCAAAGCTCAAGCTCAGGATGGTGGCGTGTCTCAGAGAACTGGCAGGAATGCTAAAAAAACAGGGCTGGATCAGTCTGAAGTGCAACTTGATGCAGCTTCAAAGACTGGCACACAGACAGCTGCAGTTGGTGCAACTCCTTTTCCTGCACAACCACCACCAACGTACATAGGGTCACCGCTTCTATGGATAGGAGTTGGAGTTGGAATATCTGCTCTATTCTCTTGGGTGGCTAATAGTGTAAAGAGGTATGCAATGCAGCAGGTTTTCAAGACTATGATGGGCCAGGCAGCTTCAAACACTAGCCAGCCTGGTGGTATGCCTATGCCCCCAGGATCTGGTTTTCCATTTCCTCCATTTGCTACTTCTGAAACTAGCCAGCCTGGTGGTACGCCAATGTCTCCAGGATCTGGTTTTCCATTTCCTCCATTCCCTACTCCTGAAACTCCCTTGTCATCCACACCGACAGTTGATGTGACTGCAACCAATGTAATGACTGAATTTACTGAGGTCAATGGAGCAGTTGAAACAAAAGTGGAGCCCAAGAAGCCTGCATTTGTGGATGTTAGCCCGGAGGAAGTGTTAGATGAGAAACCTTATGTTGGAGCTCCACAAGATTCTACAGAGAAGAACATTCCTAAGGATTCAGAAGTTAAAACTCAGGCAGACGAGGGTGCGCCTGGTAAATCTTCTGATTTTACTGGAACAGCTGGTCCGATTCTAAGTGTAGAGGCCTTGGAGAAAATGATGGAAGATCCAGTAGTTCAGAAGATGGTCTATCCGTATTTGCCCCAAGAAATGCAGAATCCAACTACATTTAAATGGATGCTGCAAAATCCACAGTATCGTAAACAACTGGAGGATATGCTAAATGGCATGAGTGGAGATGCTGCATGGGACAACCGAATGATGGAATCATTGAAAAATTTTGACCTTAGCAGTCAAGAGGTTAAGCAACAATTTGAGCAAATAGGACTTACTCCAGAAGAGGTGGTGTCCAAAATTATGGCAAATCCTGATGTTGCTATGGCATTTCAGAATCCAAAAGTACAAGCTGCCATTATGGATTGCTCACAGAACCCTATGAGCATTACCAAATACCAAAATGATAAGGAGGTGATGGATGTCTTCAATAAAATTTCGGAGCTATTTCCAGGAATGACAGGTTCTCCTTGA___TAACGTCAAAGAAAAATCCAAGGCAAATGGACTGATTTTCAGGGCTTGGCACCAGTACTAGAATACGAGTTGGAAGAATAGCAATAGGTGAAATGTTATATGACACTAGAAAATTTTGTATAACAAAATGCGCTTGGATCATCCTTGAAATATATCGAGATGAACCAAAAGGCTTTTAGGGCATCTTCCTTTCTCAAATTTCGCTAGGGGTAAGCGTGATTGTGCTTTCTCTCACGAGTGCCCTTCACCATGTCTAGGAAGGTTATAATTCTAAGTTATTTTTCTTAGTCCGTGCGTTAAGAAATTAAGTGGGGTTAACAATGGAGAGCTTTTATTTTCTGGATGAGGAAGTTGGAGTTGGAACCTGCTTTACAAGGCAAGTTTAGGTAGACTTTGAAAAAGTCTTATGTGTATAATTATCATCTTGATTCTTCTAGAGATGGATGTTTAGCAGGAACTATATAGATTTGGATTGCATATTTGTTCCGAGTCTTCACCTAAAGATATATATTTTATTGGAGCATGGAGAATGGCATATGTTTGCACTATCCAACGCTCGAGGAATTAACAAAAAAAATATTGAATCTCCTCCACACTAGGAAAAATGCTTTGATAAATAAAGTGCCTGAATAAAAATGGTAGGATTTATAAATTTACGGCAACCAGAAAGAACTTTGGGAATAGCACGTTGATTTTTCTGAACACGCCTAATTATAATGAAAGAATGTTCCATATCTGTTTCCAAGTAATTAAACTATGGAGGCAGTTTTTTCAAATTGTCTGTTCAGGTTTACAGGCAATGTTGATGTCTTATGTACAAGATACAGTGTCAACCTGAGTAGAAATGGCTTTCCTATGACAATAGCATTATTAATTATATAAGACCAGCGGTTCACTGCTTCCTTAGCTTATGGCAGCAAGGTGGCATAGAAAAATCATTATTAATTGGCCACTGTATTCGTATTATGCATTCATTTGGGGATGTAAGTAGGGCAACTCCCGGTTTATGAATTCCTAGTTAAAATTTATT

Fln Alignment:

sp_v1.1_unigene953___RHKIASGRSTGCIDTEIGFFQSRKTCRKCNSASFKARQNLHCKAQAQDGGVSQRTGRNAKKTGLDQSEVQLDAASKTGTQTAAVGATPFPAQPPPTYIGSPLLWIGVGVGISALFSWVANSVKRYAMQQVFKTMMGQAASNTSQXXXXXXXXXXXXXXXXXATSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDVTATNVMTEFTEVNGAVETKVEPKKPAFVDVSPEEVLDEKPYVGAPQDSTEKNIPKDSEVKTQADEGAPGKSSDFTGTAGPILSVEALEKMMEDPVVQKMVYPYLPQEMQNPTTFKWMLQNPQYRKQLEDMLNGMSGDAAWDNRMMESLKNFDLSSQEVKQQFEQIGLTPEEVVSKIMANPDVAMAFQNPKVQAAIMDCSQNPMSITKYQNDKEVMDVFNKISELFPGMTGSP
B8LLS2_____________RHRVASGRFTGCIDTEIGFLQSRKTWRKCDGASFKARRNLHCKAKAQDGGVSQRTGRNPKKTGLNQSEVQLDAASNTGTQTAAVGATPFPAQPSPTYIGSPLLWIGVGVGISALFSWVANSVKRYAMQQVFKTMMGQAAPGTSQPGGMPMPPGSGFPFPPFSTPETSQPGGMPMPRGSGFPFPPFPTLETPSSSTPTVDVPATKVTTEFTEVNGALETKVEPKKPAFVDVSPEEVLDQKSYVEAPQDSTEKNVPKDSEVETQADGGATGKSSNFTGTADPILSVDALEKMMEDPVVQKMVYPYLPQEMQNPTTFKWMLQNPQYRKQLEEMLNNMSGDDAWDNRMMESFKNFDLSSNEVKQQFEQIGLTPEEVVSKIMANPDVAMAFQNPRVQAAIMDCSQNPMSITKYQNDKEVMDVFNKISELFPGMTGSP

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
1396	25			75	1.0
1561	85		14		0.993533
1695	90			10	0.90298
1696	90		10		0.90298
1697			10	90	0.90298
1698	90		10		0.90298
2113	87	12			0.992554
2114	87		12		0.992554
2117	80		20		0.995493
2118	80			20	0.995493
2119	80		20		0.995493
2121	80		20		0.995493
2122	80			20	0.995493
2124			20	80	0.995493
2126		20		80	0.995493
2127	20			80	0.995493
2130	80		20		0.995493
2131		20		80	0.995493
2219		83		16	0.994512
2491	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain