SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene948

Length: 1580 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene948

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein phosphtase 2C n=1 Tax=Marchantia polymorpha RepID=D3W6X9_MARPO	-	-	47%
FL-Next	sp=Probable protein phosphatase 2C 8; Oryza sativa subsp. japonica (Rice).	-	-	51%
Blast2go	protein phosphatase 2c	-	-	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q5SN75

Fln msg: your sequence is longer than subject: 448 - 403

Fln protein: MEGLEICRSPCSIAEKNPLPCEPKSRAARRRRMEIRKFKVIATSPIVKPTETSRKRLKITILGRDFARDCVNTIESSMSGAGVELDPVTNDASTSGNEETAGLSAFPLTSEAKLQETGSAGLKEKAADRTDGCSVGVDNICPEHAFVSVCGRRREMEDAVSILPAFNCTKNESNTKSDPALHFFGVYDGHGGSQAALFCKERLHEVLAEELKIFGGNAQDETQWQQLTSVCFGRVDAEILSGGIVCRNDCITREGNNECSCGQRITSEAVGTTAVVAIVGSSQIVVANCGDSRAILSRGGRPVVLSQDHKPDRPDEMERIEAAGGRVFFWNGPRVLGVLAMSRAIGDKYLKPYVIAKPEVTINARSDEDEFLILASDGLWDVLSNEVVCEVARRCLSGRSHRSYGGLQAEGRDDTPAAIAAALLTKLAIARGSQDNITVVVVDLQRR*

Protein Length: 449

Fln nts: TAGGAGAGGGAGTAGATTTGTGCCTTTTGGCGTGACAGCGGTTGACAGCGTCGTGACCTTGGCTGTCACTCATTGTTGAATTGGCAGTCTAGGGTTTGAAAGCGCAGTTTCTGAGCTTGAAGGGATTCTTCTTTGTTGTCTGCCGGTGAAGAACATTTTGTGGAGTCCGGTATATATTGAGGTTGTCTGGC_-_ATGGAAGGCTTAGAGATCTGCAGGAGCCCGTGTAGCATAGCGGAGAAGAATCCGCTGCCATGCGAGCCCAAGTCCCGCGCGGCAAGGCGAAGGCGCATGGAGATCCGGAAATTTAAGGTTATCGCAACGTCTCCCATCGTGAAGCCCACTGAAACGTCACGGAAAAGACTTAAAATTACCATTTTGGGCCGTGATTTTGCCAGGGACTGCGTGAACACCATCGAGAGCTCAATGTCCGGGGCAGGAGTCGAGCTGGATCCAGTCACAAACGATGCCTCGACGTCTGGAAATGAGGAAACGGCAGGTCTTTCGGCTTTTCCGTTAACGAGCGAAGCGAAGCTGCAGGAAACTGGATCGGCAGGACTCAAAGAAAAGGCCGCTGACAGAACCGATGGTTGCAGTGTAGGTGTTGATAATATTTGTCCAGAACATGCCTTTGTGTCGGTATGCGGAAGGCGAAGAGAAATGGAGGACGCGGTTTCAATTCTCCCGGCTTTTAATTGCACAAAAAATGAAAGCAATACGAAGAGCGATCCGGCGCTGCACTTTTTTGGCGTCTACGATGGCCATGGCGGATCGCAGGCGGCCTTGTTCTGTAAAGAACGCCTCCACGAGGTTCTCGCGGAGGAGTTGAAGATTTTCGGCGGCAACGCGCAGGACGAGACGCAATGGCAGCAGCTCACGAGCGTTTGTTTTGGGAGAGTGGACGCCGAGATCTTATCCGGCGGTATTGTGTGCAGAAATGACTGCATAACCCGCGAAGGGAATAATGAGTGTTCTTGCGGGCAGAGAATAACATCTGAGGCTGTGGGAACTACTGCAGTGGTGGCTATTGTTGGATCTAGCCAAATCGTCGTCGCTAACTGTGGCGATTCGCGGGCCATATTGTCGCGAGGCGGAAGGCCCGTCGTTTTATCACAAGATCACAAGCCAGATCGGCCGGATGAAATGGAGCGCATAGAGGCAGCTGGCGGGCGCGTATTTTTTTGGAACGGCCCTCGCGTTCTTGGCGTCCTGGCCATGTCCAGGGCTATAGGCGACAAATACCTAAAGCCCTATGTCATCGCCAAGCCAGAGGTGACAATCAATGCCCGAAGCGACGAAGACGAATTCTTAATTCTGGCAAGCGACGGGCTCTGGGACGTGCTCTCCAACGAAGTCGTGTGCGAGGTTGCCAGGAGATGTCTGTCGGGTCGATCACACAGAAGCTACGGCGGTCTTCAGGCAGAGGGCCGAGATGACACTCCCGCGGCTATCGCTGCAGCGTTGCTGACAAAGCTGGCGATTGCTCGAGGTAGCCAAGACAATATTACCGTAGTTGTCGTGGATTTACAGAGACGCTGA___CGCCATGAGAGCTAGATGACTTATTCATTCCTTAATATGTATTTC

Fln Alignment:

sp_v1.1_unigene948___CPEHAFVSVCGRRREMEDAVSILPAFNCTKNESNTKSDPALH---------FFGVYDGHGGSQAALFCKERLHEVLAEELKIF------GGNA----QDETQWQQLTSVCFGRVDAEILSGGIVCRNDCITREGNNECSCGQRITSEXXXXXXXXXXXXSSQIVVANCGDSRAILSRGGRPVVLSQDHKPDRPDEMERIEAAGGRVFFWNGPRVLGVLAMSRAIGDKYLKPYVIAKPEVTINARSDEDEFLILASDGLWDVLSNEVVCEVARRCLSGRSHRSYGGLQAEGRDDTPXXXXXXXXXXXXXXRGSQDNITVVVVDLQR
Q5SN75_____________CVSHGAVSVIGRRREMEDAIFVAAPFLAASKEAAVEGSGVAEEEGKEEDEGFFAVYDGHGGSRVAEACRERMHVVLAEEVRVRRLLQGGGGGADVEDEDRARWKEAMAACFTRVDGEV--------------GGAEEADTGEQTVGSTAVVAVVGPR----RIVVANCGDSRAVLSRGGVAVPLSSDHKPDRPDEMERVEAAGGRVINWNGYRILGVLATSRSIGDYYLKPYVIAEPEVTVMDRTDKDEFLILASDGLWDVVSNDVACKIARNCLSGRAASKY----PESVSGSTAADAAALLVELAISRGSKDNISVVVVELRR

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
199			83	16	0.994512
201		83	16		0.994512
202			16	83	0.994512
203			16	83	0.994512
261		83	16		0.994512
276	83	16			0.994512
381		62	37		1.0
409	14		85		0.993533
455		37		62	1.0
652	83		16		0.994512
654	83		16		0.994512
675	50		50		1.0
828	25		75		0.996473
855	50		50		1.0
882		75		25	0.996473
952		88		11	0.923564
1098		90		10	0.90298
1474	6		93		1.0
1496			92	7	1.0
1521	93		6		0.999998

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain