SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene945

Length: 1746 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene945 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Histidyl-tRNA synthetase (Fragment) n=2 Tax=Triticum aestivum RepID=Q9ZTW6_WHEAT	-	-	70%
FL-Next	sp=Histidyl-tRNA synthetase; Oryza sativa subsp. japonica (Rice).	-	-	70%
Blast2go	histidyl-trna synthetase	-	-	80%

Source	InterPros	Term	Type	Identity
Blast2go	Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain	IPR002314	-	80%
Blast2go	Anticodon-binding	IPR004154	-	80%
Blast2go	Histidyl-tRNA synthetase, class IIa	IPR004516	-	80%
Blast2go	Histidyl-tRNA synthetase, class IIa, subgroup	IPR015807	-	80%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: P93422

Fln msg: your sequence is shorter than subject: 432 - 788

Fln protein: QMAIRERAFSIIVVVFWRHGAVALDTPVFELRETLMGKYGEDSKLIYDLADQGGEICSLRYDLTVPFARYLAMHGINNLKRYHIARVYRRDNPSKGRYREFYQCDFDIAGQYSPMVPDFEVMKVLTELLDELNIGHYEVKLNHRKLLDGMLEICGVPQGKFRSICSAIDKLDKQPWEQVRKEMVEEKGLTPEVADSIGSLVLKKGMPLQMLAELKQEGSCFLQHDGSVHALSELEILFKYLERSGCLNKIVFDLSLARGLDYYTGVIYEAVFKGSTQVGSIAAGGRYDNLVGMFSGKQVPAVGVSLGIERVFTIMEEECKNVISATQTEVLVVALGDDMGVAIELVSKLWAAKLKAEFVLTNSRKIVKCIADASKAGIPWMLIVGENELQKGLITLRDIQAKRQEEVPRDEIIAELKMRLNSSSSDYIAVQ*

Protein Length: 433

Fln nts: CAGATGGCCATAAGAGAAAGAGCATTTTCGATAATTGTCGTGGTGTTCTGGCGTCATGGGGCTGTGGCCCTTGATACTCCAGTTTTTGAGTTGAGAGAGACTCTGATGGGAAAGTACGGTGAAGATTCTAAGCTAATTTATGACCTTGCTGATCAGGGTGGTGAAATATGCTCTTTGAGATACGATTTGACTGTGCCTTTTGCACGATATTTGGCTATGCATGGTATCAATAATTTGAAAAGATATCACATAGCAAGGGTCTACAGGAGGGATAACCCTTCTAAGGGACGTTACCGTGAATTCTATCAGTGTGATTTTGATATTGCTGGGCAGTATTCCCCAATGGTACCTGATTTTGAAGTGATGAAGGTTTTGACTGAGCTCTTAGATGAACTAAACATCGGGCACTACGAGGTGAAGCTGAACCATCGAAAATTGTTGGATGGAATGTTAGAGATATGTGGAGTACCTCAGGGAAAATTCAGAAGTATTTGCTCTGCAATTGATAAACTGGATAAGCAGCCATGGGAGCAAGTTCGGAAAGAAATGGTGGAAGAGAAAGGTTTAACTCCAGAAGTGGCTGATAGCATTGGATCTCTTGTTCTAAAAAAAGGAATGCCACTGCAGATGCTGGCTGAGCTTAAACAGGAAGGCAGCTGTTTTCTGCAGCATGATGGTTCTGTACATGCACTTAGTGAACTTGAAATTTTGTTTAAGTATCTAGAGCGTTCAGGTTGTCTAAACAAGATAGTATTTGATCTTAGTCTTGCAAGAGGTCTTGACTACTACACTGGAGTGATATATGAAGCCGTTTTCAAGGGCAGCACACAGGTTGGTTCCATTGCAGCTGGAGGACGTTATGACAATCTTGTTGGTATGTTTAGTGGGAAGCAAGTTCCTGCAGTAGGTGTGAGCCTTGGGATTGAAAGAGTATTTACAATAATGGAGGAAGAATGCAAAAATGTAATCTCTGCCACACAGACAGAAGTTTTGGTGGTGGCCTTAGGAGATGATATGGGGGTAGCTATTGAACTAGTCAGTAAGCTCTGGGCTGCCAAATTGAAAGCGGAATTTGTTCTAACAAACAGCAGAAAAATTGTGAAATGCATAGCTGATGCATCGAAGGCTGGTATACCTTGGATGTTGATTGTGGGTGAGAATGAACTGCAGAAGGGTTTGATTACACTCAGAGACATTCAAGCTAAGAGACAAGAGGAGGTTCCAAGGGATGAGATTATTGCAGAACTAAAGATGAGATTGAATTCTTCAAGTTCTGATTACATTGCTGTCCAATGA___AATGAATTCTCATGTTTTGATTTTGGAAAGGGTTGTCAGATTTTGTCTTAATTCTATGGGAAGGATACAATATGAATTCATGCAGGCTGTGTTTTATTTTTATACGAGAAAACCCAAGAAATTCATCTGCAAATATGAGAGTAATTCTCTCGTTAGTTTGCTACACTACCTTATAGTTGTTCAGCGGGATTTTTTCAAACAGTTAGATGAGCCATAACAGTTATCTGTTTTTTCGTCCATTACTTTTACTGTAGTCAGTTTTAAATTATGCGTTATAATGCAAATGATTCTTTACTATGGAAAAAAATGTGTCATGAATAATGATTTGTGTAAAACTGGCATTGTCTACATTTTCATTCAGGGAGAGGCTAGAAGTGATAATAGAAAGTCTTCTGTCAAATCCGATGAGCAAGTCATGTTTCCACTCTGGTCTGTGGTTTTTCATAATGG

Fln Alignment:

sp_v1.1_unigene945___QMAIRERAFSIIVVVFWRHGAVALDTPVFELRETLMGKYGEDSKLIYDLADQGGEICSLRYDLTVPFARYLAMHGINNLKRYHIARVYRRDNPSKGRYREFYQCDFDIAGQYSPMVPDFEVMKVLTELLDELNIGHYEVKLNHRKLLDGMLEICGVPQGKFRSICSAIDKLDKQPWEQVRKEMVEEKGLTPEVADSIGSLVLKKGMPLQMLAELKQEGSCFLQHDGSVHALSELEILFKYLERSGCLNKIVFDLSLARGLDYYTGVIYEAVFKGSTQVGSIAAGGRYDNLVGMFSGKQVPAVGVSLGIERVFTIMEEE--CKNVISATQTEVLVVALGDDMGVAIELVSKLWAAKLKAEFVLTNSRKIVKCIADASKAGIPWMLIVGENELQKGLITLRDIQAKRQEEVPRDEIIAELKMRLNS
P93422_____________QMAIREHAFSIITGVFKMHGAVSLDTPVFELRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNNISSLKRYQIAKVYRRDNPSKGRYREFYQCDFDIAGVYETMEPDFEVIKVLTELLDQLDIGTYEIKLNHRKLLDGMLEICGVPPEKFRTVCSSIDKLDKQTFEQVKKELVDEKGISNETADKIGDLVKTRGPPLEVLLELRKEGSKFMGNAGSVTALNELEILFKALDKANAIGKIVFDLSLARGLDYYTGVIYEAVFKGTTQVGSIAAGGRYDNLVGMFSGKQVPAVGVSLGIERVFAIMEQQEMEKNQIRATETEVLVSIIGKDLILAAELVSELWNAGIKAEFKLTT--RIQNHLKYATQSGIPWMVLVGESEISSGKVKLKNLAASQEEEVDRTEFAQVLKQKLRN

SNPs (tot: 52)

Position	A %	C %	G %	T %	Probability
828	33	66			0.997452
926		11	88		0.923564
929		88		11	0.923564
1037		88		11	0.923564
1038	88		11		0.923564
1040	88		11		0.923564
1042		11		88	0.923564
1043	11			88	0.923564
1044			11	88	0.923564
1049			11	88	0.923564
1054			11	88	0.923564
1062			16	83	0.999991
1063		16	83		0.999991
1064		16		83	0.999991
1066	16	83			0.999991
1067	83		16		0.999991
1069	83			16	0.999991
1072		83	16		0.999991
1075		83	16		0.999991
1079	10	90			0.90298
1085	90	10			0.90298
1086	90	10			0.90298
1089		90	10		0.90298
1090	90		10		0.90298
1091			90	10	0.90298
1093	10			90	0.90298
1095	10	90			0.90298
1097			10	90	0.90298
1141	25			75	0.996473
1142			25	75	0.996473
1143	75			25	0.996473
1148	80	20			0.995493
1153	83		16		0.994512
1157	83		16		0.994512
1159		16		83	0.994512
1408			80	20	0.995493
1410	16		83		0.994512
1412	83			16	0.994512
1413	83		16		0.994512
1417	16			83	0.994512
1421	16	66			0.988813
1426	83	16			0.994512
1427			16	83	0.994512
1429		16		83	0.994512
1430		83	16		0.994512
1505	88	11			0.923564
1506		11		88	0.923564
1508	11			88	0.923564
1689	25	75			0.996473
1690		75		25	0.996473
1691		75	25		0.996473
1693			25	25	0.995533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain