SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene931

Length: 2386 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene931
ATGGGGGGATTGGATCGAAACCCTGTAGACGTCAGATGATCGGATGCAAATATGCCCATTGCGAACTGGTCAGGTTCATTTATCTTTGAGCTCCTCTCATCCCACAATGAATAAATGTAAATGCTGTTCTGGATCGCTGAACCCACCAACTCATCCGCATAAATTTCTCCAGCAAAAATCCAGCCTCCCACTCGCGCGCATAAATTTCTTCAACGGAAATCCAGCCGGCCACTAAATTCTCTGCACTGACAAAAGCCCACAGACTAACAGATCCCGACATGGATCGCCCCATCCCCTGGCCATCTGCAGACACAGAAATCTAGACTTTGAAAATCTTTCTAAATTCTGGATGGAACCCTGAACTGTAGGTGCAGGGTTCGATTACCACTATGGATGAGGCCGCGCCTGCCAAGGCTCCTCTCCCCTGTGACTACTGTGGCGAAGCGAATGCAGTTATCTACTGCCGAGCTGACTCCGCCAAGCTCTGCCTGCCATGCGACCACCACGTCCATTCTGCCAATGGCCTGTCCAAGAAGCATGTCCGATCCCAGCTCTGCGATAGCTGCAAAGACGAGCCCGTTACTGTTTACTGTGNGGCCGATGACGCGGTTCTTTGCCAAGAATGCGACTGGGACACCCATGGAGGAGCCTCCAATGGCCACCACCAGCGCCACTCCATCNAANGTTTCNCGGGCTGCCCCTCCGCTGAAATTCTGGCCAGCAGGTGGGGTTTCGATCTCAGCGACAAATCTCTCAATAACTCTGCTTCGCCCCTCGGGCTCACCGATCCCCAGTGCGGGAACTCCCTCGTATGGGGAACGCTTGATGATTCTCTCGACTGCATCGTATCGGGTCGTATGAAAGCTGATCCTGTGGATTCCTGGCTCTGCACGCCGTCCTCAGCTCTTCAGGACGTTCTCGTCCCCAATCCAAACTTGGGGCCCGTCGTATTCCCGGCCCCAGGGAAGCAACAAAATCATCCTCTGTGTGGTAAGCAGAAGCAAGTAATATTTGAACAGCTGCTTGAGCTGATGAAGCGGGAAGGAAGTACAGAAAACCCCGAGGACGATGAAGAAGAAGCAAAGCCTATTTCCAGACCAGGCACTCCTAATCAACATCAGCCAATTCATCCAGCCCTAGAGGTAAATGATGCGGGAAACCAAAATCCATCACAGGGCGAACAACGCTCTGTAGAGGCAATTCGTCCTATTCCTTCCTCGTCATTGCTGATGCTTCAACAGAACGGATCAAATCGTGCTATTGAGCAAGATATTATCTGGAATCGCAGCTCTGGGAACCAAGCATCCCAGCCCTGCGCAATACAGCCAACTGGGAAATGGCTTAGCAATCTTCCGGGCTCAGTTGGTCAAGTTCCTGGATCACCTCGTGTTCCAATAGAAACTGCTTGTTTGGGAAGATCTGCAGGGGAATTGAATGGAAATGATGCAAAACCCCCTACAAAGGTAGATGACTCGGGTTTGGCATCAACTTCAGCAAAGCTTGGAAAAGACACTATTAGCCCTGATTGCGATCGCAATGTCTCCTCATTGTTCAAGGGGGATCCTGGACGAAACACAACCAAGCTTGACAATGAAGCATTAGCCCAAGCACGAGGCAATGCAATGTTGCGGTACAAGGAAAAGAAAAAGACAAGAAGATATGAGAAGCACATTCGTTATGAATCTCGTAAAGCTCGAGCCGATGTAAGGAAGCGCGTGAAGGGTCGCTTTGTAAAAGCAGACAAAGAATGTGATCAAGATGCCCTTGGAAGTAGCAATTAAAGATTTACCTCTGTAGTGGGAAATGTTCAACCTGAAAATTATTTTGAATATTTTCAAATTTGGATTGCCTTTAACATCAAGGGAAATGTTCTTTGAAATCAACATACCTTGTTTGTTTGGCAGAATGTGTGCATAATGCTAAACAGGAAATGATGCTGTGAAGGACAGTAAGCTGAATCTGGTCCATAATTGGTGGCCAGGGCAGCGTTTGATGTAACTAATCTAGGCCCATCCATTTCATCACTCAGGGTCGTCTGTTATCTTTGTATTGTAATAAGTCGTCAGTATAACTTTCCTGATGAATGAAGTCATGACATTTTGGTTTTTCATCGCAGTTCAATGCATTCTTCCTGTGTCTTTCTGAAGATGTCAAAACCAAATTGTAGACATACAATATATTTGAGGTCACCAGCCCCACATGAAGGTATTGGGAATGATATTACAGTGCATTCCCATTATATTTGGGGGCAAATTGATCTTGTATGTTATTAATTTGATACGGTGAATTTATATATCATTTGTGTAGTTTTAAAGGGTGAAGACGTCCATCTTTGAGCCCTTATGTTCAATGTATACTGCATGGTTGATCAACAATGTTATTTTGG

Ace file of the UniGene sp_v1.1_unigene931

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	zinc finger (B-box type) family protein	-	-	2.0e-37	29%
FL-Next	sp=Zinc finger protein CONSTANS-LIKE 15; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	34%
Blast2go	zinc finger (b-box type) family protein	-	-	4.2039e-45	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9C7E8

Fln msg: your sequence is longer than subject: 464 - 433

Fln protein: MDEAAPAKAPLPCDYCGEANAVIYCRADSAKLCLPCDHHVHSANGLSKKHVRSQLCDSCKDEPVTVYCEADDAVLCQECDWDTHGGASNGHHQRHSIQCFAGCPSAEILASRWGFDLSDKSLNNSASPLGLTDPQCGNSLVWGTLDDSLDCIVSGRMKADPVDSWLCTPSSALQDVLVPNPNLGPVVFPAPGKQQNHPLCGKQKQVIFEQLLELMKREGSTENPEDDEEEAKPISRPGTPNQHQPIHPALEVNDAGNQNPSQGEQRSVEAIRPIPSSSLLMLQQNGSNRAIEQDIIWNRSSGNQASQPCAIQPTGKWLSNLPGSVGQVPGSPRVPIETACLGRSAGELNGNDAKPPTKVDDSGLASTSAKLGKDTISPDCDRNVSSLFKGDPGRNTTKLDNEALAQARGNAMLRYKEKKKTRRYEKHIRYESRKARADVRKRVKGRFVKADKECDQDALGSSN*

Protein Length: 465

Fln nts: ATGGGGGGATTGGATCGAAACCCTGTAGACGTCAGATGATCGGATGCAAATATGCCCATTGCGAACTGGTCAGGTTCATTTATCTTTGAGCTCCTCTCATCCCACAATGAATAAATGTAAATGCTGTTCTGGATCGCTGAACCCACCAACTCATCCGCATAAATTTCTCCAGCAAAAATCCAGCCTCCCACTCGCGCGCATAAATTTCTTCAACGGAAATCCAGCCGGCCACTAAATTCTCTGCACTGACAAAAGCCCACAGACTAACAGATCCCGACATGGATCGCCCCATCCCCTGGCCATCTGCAGACACAGAAATCTAGACTTTGAAAATCTTTCTAAATTCTGGATGGAACCCTGAACTGTAGGTGCAGGGTTCGATTACCACT_-_ATGGATGAGGCCGCGCCTGCCAAGGCTCCTCTCCCCTGTGACTACTGTGGCGAAGCGAATGCAGTTATCTACTGCCGAGCTGACTCCGCCAAGCTCTGCCTGCCATGCGACCACCACGTCCATTCTGCCAATGGCCTGTCCAAGAAGCATGTCCGATCCCAGCTCTGCGATAGCTGCAAAGACGAGCCCGTTACTGTTTACTGTGaGGCCGATGACGCGGTTCTTTGCCAAGAATGCGACTGGGACACCCATGGAGGAGCCTCCAATGGCCACCACCAGCGCCACTCCATCcAAtGTTTCgCGGGCTGCCCCTCCGCTGAAATTCTGGCCAGCAGGTGGGGTTTCGATCTCAGCGACAAATCTCTCAATAACTCTGCTTCGCCCCTCGGGCTCACCGATCCCCAGTGCGGGAACTCCCTCGTATGGGGAACGCTTGATGATTCTCTCGACTGCATCGTATCGGGTCGTATGAAAGCTGATCCTGTGGATTCCTGGCTCTGCACGCCGTCCTCAGCTCTTCAGGACGTTCTCGTCCCCAATCCAAACTTGGGGCCCGTCGTATTCCCGGCCCCAGGGAAGCAACAAAATCATCCTCTGTGTGGTAAGCAGAAGCAAGTAATATTTGAACAGCTGCTTGAGCTGATGAAGCGGGAAGGAAGTACAGAAAACCCCGAGGACGATGAAGAAGAAGCAAAGCCTATTTCCAGACCAGGCACTCCTAATCAACATCAGCCAATTCATCCAGCCCTAGAGGTAAATGATGCGGGAAACCAAAATCCATCACAGGGCGAACAACGCTCTGTAGAGGCAATTCGTCCTATTCCTTCCTCGTCATTGCTGATGCTTCAACAGAACGGATCAAATCGTGCTATTGAGCAAGATATTATCTGGAATCGCAGCTCTGGGAACCAAGCATCCCAGCCCTGCGCAATACAGCCAACTGGGAAATGGCTTAGCAATCTTCCGGGCTCAGTTGGTCAAGTTCCTGGATCACCTCGTGTTCCAATAGAAACTGCTTGTTTGGGAAGATCTGCAGGGGAATTGAATGGAAATGATGCAAAACCCCCTACAAAGGTAGATGACTCGGGTTTGGCATCAACTTCAGCAAAGCTTGGAAAAGACACTATTAGCCCTGATTGCGATCGCAATGTCTCCTCATTGTTCAAGGGGGATCCTGGACGAAACACAACCAAGCTTGACAATGAAGCATTAGCCCAAGCACGAGGCAATGCAATGTTGCGGTACAAGGAAAAGAAAAAGACAAGAAGATATGAGAAGCACATTCGTTATGAATCTCGTAAAGCTCGAGCCGATGTAAGGAAGCGCGTGAAGGGTCGCTTTGTAAAAGCAGACAAAGAATGTGATCAAGATGCCCTTGGAAGTAGCAATTAA___AGATTTACCTCTGTAGTGGGAAATGTTCAACCTGAAAATTATTTTGAATATTTTCAAATTTGGATTGCCTTTAACATCAAGGGAAATGTTCTTTGAAATCAACATACCTTGTTTGTTTGGCAGAATGTGTGCATAATGCTAAACAGGAAATGATGCTGTGAAGGACAGTAAGCTGAATCTGGTCCATAATTGGTGGCCAGGGCAGCGTTTGATGTAACTAATCTAGGCCCATCCATTTCATCACTCAGGGTCGTCTGTTATCTTTGTATTGTAATAAGTCGTCAGTATAACTTTCCTGATGAATGAAGTCATGACATTTTGGTTTTTCATCGCAGTTCAATGCATTCTTCCTGTGTCTTTCTGAAGATGTCAAAACCAAATTGTAGACATACAATATATTTGAGGTCACCAGCCCCACATGAAGGTATTGGGAATGATATTACAGTGCATTCCCATTATATTTGGGGGCAAATTGATCTTGTATGTTATTAATTTGATACGGTGAATTTATATATCATTTGTGTAGTTTTAAAGGGTGAAGACGTCCATCTTTGAGCCCTTATGTTCAATGTATACTGCATGGTTGATCAACAATGTTATTTTGG

Fln Alignment:

sp_v1.1_unigene931___LPCDYCGEANAVIYCRADSAKLCLPCDHHVHSANGLSKKHVRSQLCDSCKDEPVTVYCEADDAVLCQECDWDTHGGAS-NGHHQRHSIQCFAGCPSAEILASRWGFDLSD--KSLNNSASPLGLTDPQCGNSLVWGTLDDSLDCIVSGRMKADPVDSWLCTPSSALQDXXXXXXXXXXXXXXAPGKQQNHPLCGKQKQVIFEQLLELMKREGSTENPEDDEEEAKPISRPGTPNQHQPIHPALEVNDAGNQNPSQGEQRSV-EAIRPIPSSSLLMLQQNGSNRAIEQDIIWNRSSGNQASQPCAIQPTGKWLSNLPGSVGQVPGSPRVPIETACLGRSAG------------------------ELNGNDAK-------PPTKVDDSGLAST-SAKLGKDTISPDCDRNVSSLFKGDPGRNT----TKLDNEALAQARGNAMLXXXXXXXXXXXXXHIRYESXXXXXXXXXXXXXXFVKADK
Q9C7E8_____________VPCDFCGERTAVLFCRADTAKLCLPCDQQVHTANLLSRKHVRSQICDNCGNEPVSVRCFTDNLILCQECDWDVHGSCSVSDAHVRSAVEGFSGCPSALELAALWGLDLEQGRKDEENQVPMMAMMMDNFGMQL----------------------DSWVLGSNELIVPSDTTFKKRGSCGSS----------CGRYKQVLCKQLEELLK-SGVVGGDGDDGDRDRDCDREGACD--------------GDGDGEAGEGLMVPEMSERLKWSRDVEEINGGGGGGVNQQ--WNATTTN----PSGGQSSQIWDFNLGQSRGPEDTS---RVEAAYVGKGAASSFTINNFVDHMNETCSTNVKGVKEIKKDDYKRSTSGQVQPTKSESNNRPITFGSEKGSNSSS---DLHFTEHIAGTSCKTTRLVATKADLERLAQNRGDAMQRYKEKRKTRRYDKTIRYESRKARADTRLRVRGRFVKASE

SNPs (tot: 48)

Position	A %	C %	G %	T %	Probability
239	25	75			0.996473
497		60		40	1.0
578	14	85			0.993533
595	57	42			1.0
607		85		14	0.993533
681	20		80		0.995493
684	20		80		0.995493
690	40		60		1.0
927		33		66	0.997452
955	66	33			0.997452
959		66		33	0.997452
1002			83	16	0.994512
1003		83	16		0.994512
1004	83		16		0.994512
1005	83		16		0.994512
1013	11			88	0.923564
1017	88		11		0.923564
1018		88	11		0.923564
1061		88		11	0.923564
1114		90	10		0.90298
1115	90		10		0.90298
1116	90		10		0.90298
1267		90		10	0.90298
1330	83			16	0.994512
1331		83	16		0.994512
1332			16	83	0.994512
1343			14	85	0.993533
1345	85	14			0.993533
1347		85		14	0.993533
1348	85		14		0.993533
1350		14		85	0.993533
1355		83		16	0.994512
1357		16	83		0.994512
1358	16		83		0.994512
1546		75		25	1.0
2019		6		93	0.999364
2020			6	93	0.999364
2023	93		6		0.999364
2025		93	6		0.999364
2030	93			6	0.999364
2031			90	6	0.997952
2034		6		93	0.999364
2035		93		6	0.999453
2039	6			93	0.999453
2040		6	93		0.999453
2042		6		93	0.999453
2300	90		10		0.90298
2357			20	40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain