SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene927

Length: 3031 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene927
CGTCGTGACCTTGGCTGTCACTCAAATTCCCTTGTTCTTCCAAGGAGAAATGCACCACAAGGTTTTTATACATTAAGGAGTTTTGGTTGATGACAAGATACTTTGTCTGGGGAAAAGGTTGTGCATTAGACTTCTGCTTCCTTGCACCTTTGTATTGGAAGATCAGGTACAGTCATGGATGATCGTGCCAACAGGAGGACTGCACTGCCTGTTGGAGTTAGTAGGCGGGGTACTTGTTTTTCTGGAGAACAAAATCATGTAGCACAGAATATCCATTACCCTACAAGAATTGGGGGTAGTACCAGAGTGACTGCTCTTAAACCCAACCATATTGATGATAAGCAACCAGGGGAATCCTCTAAAATTAGTGGACGTCCCTCAAGCAACAAGTCATTGTTGCCAAAGATGCCAAAGTCGGTTTCAGCAGTTTCTAAAGTAGGTGCCTCCAGCTCCTCAAATTTGAAGAAGACACGCAAAGTGCAGCCAAATTCTGCTGCTCCTGGGCAGTCAAGTTCAATACGTAATCTCTCTGCTGGGTTGGGTCAGACAGGGCAGGTTAGTGCTGCATTCCATAAGGGAGAACCAAGCAATAGCAGTAGACTCGGTCTATCAGAAATATCGAATTTGACAAGCTCTGAAGGATCAACCTCTGACTTGGACTTTCATCAGGAAACACCGACTTCTTCCATGAGGAGAAGCCTCTTTCGTGGTGGTTCTAGTGTGGAAAGGAGAGATAAACGAGTTGTTTCTAGCAGGTTTCTAAATAGACAGGGAAGTTGGAATGATATGGAGTTATTAAATGTAAACAGCAGTTTGTCAGATTTAATGTATGGGGAACATGAACATAATTGGACTGGTATAGAGGAAAATGGGACTAGGAACATAGGAGCGGGTACTCCTCTGAGATCTGGGCTCATGAATGATGCAACAAATCGGTCAATTTTTGAAAATGATCATGAATCCGTCTCTGATGATTCTTTTGTCTCTGCCCCATCAGTGGCTGAAGATCTATTTGACGTGGATGTTGCTAGTAGCAGTGATTCTCTGTTGCAGTCTAGCCCACAGTTAGGTCAAAGAGCTCAAGACCATGGCAATTTTAGAAGGCCAATGCTAGGCCATGCAGATAAATCGCATATGAATCTTGGTGAGGTTGTGAATATGTCTACGTCTTCTCTATCTAAACGCAAGGCTTCTATCACACGAAATGGAAGCCAAATTCCGAGTAAAAGTTCATCTCATGAAATTCCTTGTACAGGATCTGGATCTGCATCAAAGGACAGGTATTCCAGGAGACCCTCAGCAGGAACTAGTAGGCGTAATCTTGGTAACTTTGGATGCAAATCAGCATCTGATGCACTACCATTTAATGTTTCTTCATCCAGTGACCAGGTCTTGGAGCAACCTGGCAGTAGAAGACTTGATCTAGGTAGGAAAATAATTGATGGACATGATTCAGCAAGGAGCCGGCGTTTGGCCAAAGCGCCAGTGGCAAACAGTACAGGTGGGTCAGTGTCCCAGAGAACTTTCCGTGCTGGAGCAGGAATTGGTCCTCGACATATGACTTCAAAGTCAAATTCAACTCCCCAAGCATCTAGAAGAACAGCTCATGCTATGCAACCTGATAATTGTTGTCCCCTGGGAATTCTGGGAGGGGATGGTGTTGTTGAGTTGGGAATTCCAACTGAAAGTAGTAGCAATGGCATGCCAGCATCAGACCAATCTGGACTTCTTTCTAATAGAGTGGAGGTACCAAGCCCTTCCTCTTTCCGGGGGCGAAGTGTCCATGCTGTTTCACAAAGGCAAAATGAAGTATCGAATGTAGCAGCATCCACATCAGGGGAGAGGGTTGCAAACCGATTTGTTGGCAGCACCAGAAGGGGCACATCAAATAGTGCAGCAAGTGCACGGCTGTTTGGATTAGCAGGATCTTCAAGTAGACTCAATAATACTTGTACTGATACCAATAGTAGTTCTCACAACCTTCTATCTGAGGATAATGTTGGCAATAACACATTAAATATATCTGGCCTAGCACCATCAAGGGCACCTCCAGTACACCAAGGGGCACGTCCTGGTCGGTCACAGATAAATGCAATTTCATCCACATCGCTATCTTTCTCGGGATCTGCTCCAGCTCGGGCACCCCCCTCATTTCCCTCATCTAGTCCTACATCTCTGGCGTCTGCAGTGGATACAAATTATTCAAGCTTCCTTGATGGGCTTGCTTATGGAAGGTCAGGATCTGGCAATGAATGTCCGGCTGGAAGGCCCATGGTTGCCCATTCTGAAGTTGGTGGACGCAGGTCTTTACGCAATCTCTCCATTGAAAATGACAGTCAGACACGGTATACAATTGAAGGACTAGCAGAGGTGCTATTGGCATTGGAACGGATTGAACAAGATGAGGAGTTAACATACGAGCAAGTGTTGATGCTAGAGGCAAATTTGCTGTTCAGTGGTATAAATATGCACGATCAACACAGTGACATGCGGCTAGATATTGATAACATGTCTTATGAGGAACTACTAGCTTTGGAGGAGCGGATTGGTAGTGTTAATACAGGACTTACTGAAGAGGCTGTTTCCAAGTGTTTGACGAGATTTCTGTATACCTCGGATGTAGCAGCTGCTACTTCGACTTCCCAAGAAAGTGAAGTGAAATGCAGTGTTTGCCAGGAAGAGTATGAAGAAAGAGAGGAGCTGGGCAGGTTAAATTGTGATCACAGTTATCATGCTGCTTGTATTAAGCAGTGGCTGCTTCAAAAGAATCAGTGTCCAATTTGCAAATCTCCAGCCGTGTCATAGCTGGAGGAATTTGATTCCATTGGCTTTTGAATATTGATTGATGAGATTAAATGTTGATCACTGTTTCCAATAAAAAATTCTAGTCTCTTTTCACCCATGCCCTGGGCAGATAAAGAGAAATCTGGGGTCTGTCTAATTACCCTTGCATGCAACATGCATATGGGTCTGTAAATTCATTTGAACACCTTGTATCTATGAAAAAGAAATAAAATAAATTTGTCAGATA

Ace file of the UniGene sp_v1.1_unigene927

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ring finger protein, putative	-	-	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	41%
Blast2go	zinc finger family protein	-	-	67%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	67%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	67%
Blast2go	Zinc finger, C3HC4 RING-type	IPR018957	-	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADP2

Fln msg: your sequence is longer than subject: 877 - 282

Fln protein: MDDRANRRTALPVGVSRRGTCFSGEQNHVAQNIHYPTRIGGSTRVTALKPNHIDDKQPGESSKISGRPSSNKSLLPKMPKSVSAVSKVGASSSSNLKKTRKVQPNSAAPGQSSSIRNLSAGLGQTGQVSAAFHKGEPSNSSRLGLSEISNLTSSEGSTSDLDFHQETPTSSMRRSLFRGGSSVERRDKRVVSSRFLNRQGSWNDMELLNVNSSLSDLMYGEHEHNWTGIEENGTRNIGAGTPLRSGLMNDATNRSIFENDHESVSDDSFVSAPSVAEDLFDVDVASSSDSLLQSSPQLGQRAQDHGNFRRPMLGHADKSHMNLGEVVNMSTSSLSKRKASITRNGSQIPSKSSSHEIPCTGSGSASKDRYSRRPSAGTSRRNLGNFGCKSASDALPFNVSSSSDQVLEQPGSRRLDLGRKIIDGHDSARSRRLAKAPVANSTGGSVSQRTFRAGAGIGPRHMTSKSNSTPQASRRTAHAMQPDNCCPLGILGGDGVVELGIPTESSSNGMPASDQSGLLSNRVEVPSPSSFRGRSVHAVSQRQNEVSNVAASTSGERVANRFVGSTRRGTSNSAASARLFGLAGSSSRLNNTCTDTNSSSHNLLSEDNVGNNTLNISGLAPSRAPPVHQGARPGRSQINAISSTSLSFSGSAPARAPPSFPSSSPTSLASAVDTNYSSFLDGLAYGRSGSGNECPAGRPMVAHSEVGGRRSLRNLSIENDSQTRYTIEGLAEVLLALERIEQDEELTYEQVLMLEANLLFSGINMHDQHSDMRLDIDNMSYEELLALEERIGSVNTGLTEEAVSKCLTRFLYTSDVAAATSTSQESEVKCSVCQEEYEEREELGRLNCDHSYHAACIKQWLLQKNQCPICKSPAVS*

Protein Length: 878

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTCCCTTGTTCTTCCAAGGAGAAATGCACCACAAGGTTTTTATACATTAAGGAGTTTTGGTTGATGACAAGATACTTTGTCTGGGGAAAAGGTTGTGCATTAGACTTCTGCTTCCTTGCACCTTTGTATTGGAAGATCAGGTACAGTC_-_ATGGATGATCGTGCCAACAGGAGGACTGCACTGCCTGTTGGAGTTAGTAGGCGGGGTACTTGTTTTTCTGGAGAACAAAATCATGTAGCACAGAATATCCATTACCCTACAAGAATTGGGGGTAGTACCAGAGTGACTGCTCTTAAACCCAACCATATTGATGATAAGCAACCAGGGGAATCCTCTAAAATTAGTGGACGTCCCTCAAGCAACAAGTCATTGTTGCCAAAGATGCCAAAGTCGGTTTCAGCAGTTTCTAAAGTAGGTGCCTCCAGCTCCTCAAATTTGAAGAAGACACGCAAAGTGCAGCCAAATTCTGCTGCTCCTGGGCAGTCAAGTTCAATACGTAATCTCTCTGCTGGGTTGGGTCAGACAGGGCAGGTTAGTGCTGCATTCCATAAGGGAGAACCAAGCAATAGCAGTAGACTCGGTCTATCAGAAATATCGAATTTGACAAGCTCTGAAGGATCAACCTCTGACTTGGACTTTCATCAGGAAACACCGACTTCTTCCATGAGGAGAAGCCTCTTTCGTGGTGGTTCTAGTGTGGAAAGGAGAGATAAACGAGTTGTTTCTAGCAGGTTTCTAAATAGACAGGGAAGTTGGAATGATATGGAGTTATTAAATGTAAACAGCAGTTTGTCAGATTTAATGTATGGGGAACATGAACATAATTGGACTGGTATAGAGGAAAATGGGACTAGGAACATAGGAGCGGGTACTCCTCTGAGATCTGGGCTCATGAATGATGCAACAAATCGGTCAATTTTTGAAAATGATCATGAATCCGTCTCTGATGATTCTTTTGTCTCTGCCCCATCAGTGGCTGAAGATCTATTTGACGTGGATGTTGCTAGTAGCAGTGATTCTCTGTTGCAGTCTAGCCCACAGTTAGGTCAAAGAGCTCAAGACCATGGCAATTTTAGAAGGCCAATGCTAGGCCATGCAGATAAATCGCATATGAATCTTGGTGAGGTTGTGAATATGTCTACGTCTTCTCTATCTAAACGCAAGGCTTCTATCACACGAAATGGAAGCCAAATTCCGAGTAAAAGTTCATCTCATGAAATTCCTTGTACAGGATCTGGATCTGCATCAAAGGACAGGTATTCCAGGAGACCCTCAGCAGGAACTAGTAGGCGTAATCTTGGTAACTTTGGATGCAAATCAGCATCTGATGCACTACCATTTAATGTTTCTTCATCCAGTGACCAGGTCTTGGAGCAACCTGGCAGTAGAAGACTTGATCTAGGTAGGAAAATAATTGATGGACATGATTCAGCAAGGAGCCGGCGTTTGGCCAAAGCGCCAGTGGCAAACAGTACAGGTGGGTCAGTGTCCCAGAGAACTTTCCGTGCTGGAGCAGGAATTGGTCCTCGACATATGACTTCAAAGTCAAATTCAACTCCCCAAGCATCTAGAAGAACAGCTCATGCTATGCAACCTGATAATTGTTGTCCCCTGGGAATTCTGGGAGGGGATGGTGTTGTTGAGTTGGGAATTCCAACTGAAAGTAGTAGCAATGGCATGCCAGCATCAGACCAATCTGGACTTCTTTCTAATAGAGTGGAGGTACCAAGCCCTTCCTCTTTCCGGGGGCGAAGTGTCCATGCTGTTTCACAAAGGCAAAATGAAGTATCGAATGTAGCAGCATCCACATCAGGGGAGAGGGTTGCAAACCGATTTGTTGGCAGCACCAGAAGGGGCACATCAAATAGTGCAGCAAGTGCACGGCTGTTTGGATTAGCAGGATCTTCAAGTAGACTCAATAATACTTGTACTGATACCAATAGTAGTTCTCACAACCTTCTATCTGAGGATAATGTTGGCAATAACACATTAAATATATCTGGCCTAGCACCATCAAGGGCACCTCCAGTACACCAAGGGGCACGTCCTGGTCGGTCACAGATAAATGCAATTTCATCCACATCGCTATCTTTCTCGGGATCTGCTCCAGCTCGGGCACCCCCCTCATTTCCCTCATCTAGTCCTACATCTCTGGCGTCTGCAGTGGATACAAATTATTCAAGCTTCCTTGATGGGCTTGCTTATGGAAGGTCAGGATCTGGCAATGAATGTCCGGCTGGAAGGCCCATGGTTGCCCATTCTGAAGTTGGTGGACGCAGGTCTTTACGCAATCTCTCCATTGAAAATGACAGTCAGACACGGTATACAATTGAAGGACTAGCAGAGGTGCTATTGGCATTGGAACGGATTGAACAAGATGAGGAGTTAACATACGAGCAAGTGTTGATGCTAGAGGCAAATTTGCTGTTCAGTGGTATAAATATGCACGATCAACACAGTGACATGCGGCTAGATATTGATAACATGTCTTATGAGGAACTACTAGCTTTGGAGGAGCGGATTGGTAGTGTTAATACAGGACTTACTGAAGAGGCTGTTTCCAAGTGTTTGACGAGATTTCTGTATACCTCGGATGTAGCAGCTGCTACTTCGACTTCCCAAGAAAGTGAAGTGAAATGCAGTGTTTGCCAGGAAGAGTATGAAGAAAGAGAGGAGCTGGGCAGGTTAAATTGTGATCACAGTTATCATGCTGCTTGTATTAAGCAGTGGCTGCTTCAAAAGAATCAGTGTCCAATTTGCAAATCTCCAGCCGTGTCATAG___CTGGAGGAATTTGATTCCATTGGCTTTTGAATATTGATTGATGAGATTAAATGTTGATCACTGTTTCCAATAAAAAATTCTAGTCTCTTTTCACCCATGCCCTGGGCAGATAAAGAGAAATCTGGGGTCTGTCTAATTACCCTTGCATGCAACATGCATATGGGTCTGTAAATTCATTTGAACACCTTGTATCTATGAAAAAGAAATAAAATAAATTTGTCAGATA

Fln Alignment:

sp_v1.1_unigene927___LDIDNMSYEELLALEERIGSVNTGLTEEAVSKCLTRFLYTSDVAAATSTSQESEVKCSVCQXXXXXXXXLGRLNCDHSYHAACIKQWLLQKNQCPIC
D5ADP2_____________VDPDNMLYEELVALSEVVGTESRGLAPDLISS-----LPLSKFVPETPSSSNSE-RCVICRLEYEGGDIILTLPCKHQYHSDCIKNWLQIKKVCPVC

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
1490	83		16		0.994512
1491		16	83		0.994512
1493		16	83		0.994512
1715	87		12		0.992554
1718	87			12	0.992554
1723	87			12	0.992554
1724	87			12	0.992554
1725			12	87	0.992554
1729		12	87		0.992554
1733	12			87	0.992554
1790		16		83	0.994512
2162		72		27	1.0
2164		72	27		1.0
2165	72		27		1.0
2510	13			86	0.999973
2605		5	94		0.998578
2611	5			94	0.998744
2891	30			69	1.0
2904		70		30	1.0
2910		70	30		1.0
2924	70		30		1.0
2970	75	25			1.0
3007	16		83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain