SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene926

Length: 1761 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene926

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF231 domain containing protein	-	-	1.00053e-42	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	protein	-	-	0.0	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Domain of unknown function DUF231, plant	IPR004253	-	0.0	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUP3

Fln msg:

Fln protein: MVGGLFFPDADNMKSSLAEKEKSSAIEKPSDITSAELPPTKDEKSSSVEKNVCDHTVGKWVQDSKKPIYSGKKCQRWLSGMWACRLTQRPDFSYEKYRWQPDNCDMPNFEGRHFLTRMQNKTLAFIGDSLGRQQFQSMMCLITGGKDSRNVQDVGKEYGLVRARGAIRPDGWAYRFQKTNTTVLYYWSASLCEIEPLNPGNPSTGFAMHLDRPAWFLRTNLHRFDVVVLNTGHHWNRGKLNANRWNMYVNGQPNNDRKVRDLQSARNLTVHSVVRWLDEQLDKYPNLRVFMRTLSPRHFFNGDWNSGGRCDNTKLLSGRRIVSQNRANDPAAESAVQGTRVESLDITGISELRDDAHLSKYSLKSNNGSQDCLHWCLPGVPDTWNEVLFAQLLLPQPKKLSAQI*

Protein Length: 406

Fln nts: CGTCGTGACCTCGGCGTCACTCAAGTTCAGAAAAAGATATT_-_ATGGTCGGAGGTTTGTTCTTTCCAGATGCTGATAATATGAAGTCCAGCTTGGCAGAAAAAGAGAAATCTTCGGCAATTGAAAAGCCCTCTGACATTACTTCTGCAGAATTACCTCCTACAAAAGATGAAAAGTCATCATCTGTTGAGAAGAATGTATGTGACCATACCGTAGGAAAATGGGTTCAAGATAGCAAGAAACCAATATACTCTGGAAAGAAGTGTCAGCGCTGGTTATCAGGAATGTGGGCATGCAGGTTGACACAACGCCCTGATTTTTCTTATGAAAAATATCGATGGCAGCCTGATAACTGTGACATGCCCAATTTTGAAGGGCGGCACTTTCTTACAAGAATGCAGAACAAAACACTCGCATTTATTGGGGATTCGTTAGGAAGGCAACAATTCCAGTCTATGATGTGCCTCATTACAGGTGGTAAAGACAGCCGAAATGTTCAAGATGTAGGCAAGGAATATGGTTTAGTACGTGCTCGTGGTGCGATAAGGCCAGATGGTTGGGCCTATAGATTCCAAAAGACCAACACAACTGTATTGTATTATTGGTCAGCAAGCCTCTGTGAAATTGAACCACTGAACCCAGGAAACCCATCCACCGGCTTTGCAATGCATCTTGACCGACCGGCATGGTTCCTGCGTACTAATCTTCATAGGTTTGATGTTGTAGTGCTGAATACAGGGCACCATTGGAACAGGGGAAAATTAAATGCAAACAGATGGAACATGTATGTCAATGGACAACCAAACAATGATAGGAAGGTGAGAGACCTCCAAAGTGCTCGCAATTTGACAGTGCATAGTGTTGTGAGATGGCTTGATGAACAGTTGGATAAGTATCCAAACTTGAGGGTCTTCATGAGAACCCTATCTCCTAGGCACTTCTTTAATGGGGATTGGAACTCAGGGGGTCGTTGCGATAACACCAAACTGTTGTCTGGACGTCGCATTGTTTCTCAAAACCGAGCTAATGATCCAGCCGCTGAGAGTGCTGTTCAGGGCACAAGAGTTGAAAGTTTAGATATCACTGGAATTTCAGAGTTAAGGGATGACGCTCATCTATCCAAATACAGCCTCAAATCGAATAATGGCTCTCAGGATTGTTTGCATTGGTGTCTTCCCGGGGTCCCTGATACATGGAATGAGGTCCTTTTTGCTCAGCTGTTGCTTCCACAACCAAAGAAACTGTCAGCACAAATATGA___TGTTGCAGCATTATTTTCCAGAGAACAGGATTCTATCTCTAGTTTGTGGAAGTGCAACTAATAACTTGTTCCAACATGAACAGATAATGGATTTGGAGACCTATTATTATAGATTACAGTAAGTAAATGCACATTTCTTACCGTATCATATCGTCTGTTGGGTTATTATTCTTTCAACTTATGAAAAAAGTGTGACAAGGATTAGAAGCAAATATGTTGTTGCAGTTGCAATGATTTTCATCTTCCCAGTAAAAGCAGTTGGGAAATGCATCCTTGTGATCTTGCAGAGAAGGCAAGTTACACATTGTGGCATATTGAGTCGCTATATTTCTTCTCTAATAGTAAGTCGATGTTGACCGGAAGGTATCACCAAACGTTGGCTATGCAGTCATATAATTTGTTGCTGCAGTCAATGTTGGATAATTATAACTGTCTATGTCGCTAGAACGTTTCCTATTTTTATTTTTTTATCCAATAAACGGTGCTTAAGTAGCACTTCTGATCC

Fln Alignment:

sp_v1.1_unigene926___SDITSAELPPTKDEKSSSVEKNVCDHTVGKWVQDSKKPIYSGKKCQRWLSGMWACRLTQRPDFSYEKYRWQPDNCDMPNFEGRHFLTRMQNKTLAFIGDSLGRQQFQSMMCLITGGKDSRNVQDVGKEYGLVRARGAIRPDGWAYRFQKTNTTVLYYWSASLCEIEPLNPGNPSTGFAMHLDRPAWFLRTNLHRFDVVVLNTGHHWNRGKLNANRWNMYVNGQPNNDRKVRDLQSARNLTVHSVVRWLDEQLDKYPNLRVFMRTLSPRHFFNGDWNSGGRCDNTKLLSGRRIVSQNRANDPAAESAVQGTRVESLDITGISELRDDAHLSKYSLKSNNGSQDCLHWCLPGVPDTWNEVLFAQLLLPQPKKLSAQI
A9NUP3_____________SDITAEELPPTKVEKSSAIEKKVCDYTEGKWVQDSRKPIYSGKMCKRWLSGMWACRLTQRPDFSYEKYRWQPDNCDMPDFKGRHFLARMQHKTIAFAGDSLGRQQFQSIMCLITGGKDSTDVQDVGKEYGLVRARGAIRPDGWAYRFRKTNTTVLYYWSASLCEIEPLNPGNPSTNFAMHLDRPAWFLRTNLYRFDVVVLNTGHHWNRGKLNANRWHMYVNGQPKNDRTLRDLKSARNLTVHSVVKWLDEQFDKYPNLRVFMRTLSPRHFFNGDWNSGGRCDNTKLLFGSHNVSHN--NDPAAESAVQGTRVEYLDITGISELRDDAHLSKYSLKSNNGSQDCLHWCLPGVPDTWNELLFARLLFPQPKKPSAQI

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
486		33		66	0.997452
792		14		85	0.993533
1009		11		88	0.923564
1069	88			11	0.923564
1071			11	88	0.923564
1072			11	88	0.923564
1089			10	90	0.90298
1090			10	90	0.90298
1091		90	10		0.90298
1287	88			11	0.923564
1485	30		69		1.0
1593	9	90			0.999872
1595	90		9		0.999872
1596	90		9		0.999872
1615		31		68	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain