SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene908

Length: 2313 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene908
TAACTTTAACTTTGCCCTTCTAAGACGTGCCAGACGCCTCTAGACGGGCTGTGACGTGTTCAATTTTGAACACTGAATCGCATGTCATTGGCACCCTTCGTACCTCCGGTGGAGCTTGGCTTTCCTGTGACTCGAACCCTGATCGCTAGTCTCTTCGAATCATTTCATTATGAAGTCATGGCGTCGATGAGTTTCTATGAAATGCTCAGATTCTCCAGCCATTAGAAGCACCTTTGGGCAGCCATTATTCTTCATTACTAATTAGCGAGCAGGCTTGCTTGGAGTTTATTTTCAAAAGGGTTTTAAGCTGTCGTGGAATCAATCTGGATTTGTAGTCATGAAGCTCGATGTCAATGTGTTGCGATATTTATCCAAGGACGAGTTTCGTGTACTCACAGCCGTTGAAATGGGCATGAAAAATCATGAAATTGTCCCAGCAGAGCTTGTGGATCGAATTGCCGGTCTCAAGCATGGGGGCACTTACAAGAATTTGAGAACACTGCTTAGGCATAAGCTTGTGCATCACGATTCATCCAAATATGATGGTTATCGTCTAACCTACATGGGATATGACTTTCTTGCAATAAAGACATTGGCAAACCGCGGCATGATTGTAGGTGTTGGTCGTCGAATAGGTGTTGGGAAAGAATCAGATATTTTCGAGGTTGCCACAGAAGATGGTAGAACATTGGCAATGAAATTGCACAGATTGGGTCGGACATCATTTAGAGCTGTTAAATCTAAGCGTGACTATTTGAGACATCGAAACAGCTATAATTGGCTCTACCTATCAAGACTTGCCGCTCTTAAAGAATTTGCCTTTATGAAGGCCCTTGAAGAACACGGTTTTCCAGTTCCCAATGCAGTAGACTGTAATCGACATTGTGTTCTGATGTCTCTTGTTCCAGGTTATCCTCTGGTCCAAGTTAAGCAGCTGCAACATCCAAAACAAACATTTAATACTATAATTGGCCAAATTGTTCGACTGGCAGAACATGGTCTCATCCACTGTGATTTCAATGAGTTCAATATTATGATTGATGACGAGGAAAATGTCACAATGATTGACTTTCCACAAATGGTTTCTGTCTCTCATCGCAATGCACAAATGTATTTTGATAGAGATGTAGATTGTATATTCAAGTTCTTTGAAAAGAGGTTTGCTGCCAATGCTGCTGAGGGGTCAGACGTGCTAGAAGAATCAGATTCAGATTCGGATGATGATAGAAGGCCATGCTTTGAAGCAATTGCTAAATCAGCTGGTTCCTTGGATAAGGCACTTGCTGCAAGTGGGTTCACAGGACAGAATCAGGATGATTTGGAAAAGTTTGTTTTTGGGAACGCAGATAGTAATGATGCCCCAAGTTCAGATATTGAAGATGATGCAGAAGGAGAATCATTTTCCCAGGAAACTGTGCTTGGTGGTGAAAAAGCTAGTCGTCTTGAGACCCAAGAATCAATTTCCCAGGAGGCTCTGCCTGGTGGTGAAAACGCTAGTCATCTGAAAACCATTTCTGTAGTTGTTAATGGTGATTGTGCAGAGGTTTCAGATCATGGGGATAATGTAGATAGTTGTAGTGCAAGTGACAGGGTTGCTGCCATTTCTCTTAGTAATGGATGCAATATGGATCAACAAATATCTGCACAAGATACAAGTATCCAATCCAGCACTGCAGGAGATGAAGGAGGAGATGATGAATCTGCTACAAGTGATGATGATCCTGAACTTGATAGGCGATTAGAGAAGCAGAGGAAGCGAGCTATTGCAGCAGCCCATGGTGCTAGGAGGTCCCATGCCTCAAGAAATTCTTCGAAGGACAAAGGTGGCAGGAGATCTTATAATGCAAAGATGCAGATGAAATCTCTCCTTTGGTGAAGTATACCTTTTTGGAATTTTGAGTGTTAATTTTGACAAACTATTACTGGCAGTAGTGTATGAAATGTTTTGAGATATGGTTCTAAATTTGTTATATTCGTAGAGGGTTAAACTAATATTGTTTATCTGTTAGCAAGTTAATGAGTCACAATGACACGAGTTTTAAATGTAGCAACGTGACCTTCTTTTAGGCTGTTATTCTAGTTGTGTTTAATACAGTGTTTGAGTTCACTTGGTAAGAGTAAATAGATGTCATAACCTGCAGACTGATCTCTGATCCAGATCGGTTGTTCTTTAATACAAGGTGTTGCGATTAAGTTTTCAAGGGTTGACCAAACTTAACAATGTTGAGCTTTCGCCCGTGTCAATTTGTTTGTATATATAATATTTGCCATTTTGTCAATTTGTCAATATAATATGCTCCGCTCCATTCCTTT

Ace file of the UniGene sp_v1.1_unigene908 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Serine/threonine-protein kinase rio2, putative n=1 Tax=Ricinus communis RepID=B9T518_RICCO	-	-	56%
FL-Next	tr=Serine/threonine-protein kinase rio2, putative; Ricinus communis (Castor bean).	-	-	61%
Blast2go	serine threonine-protein kinase	-	-	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9T518

Fln msg: your sequence is longer than subject: 513 - 470

Fln protein: MKLDVNVLRYLSKDEFRVLTAVEMGMKNHEIVPAELVDRIAGLKHGGTYKNLRTLLRHKLVHHDSSKYDGYRLTYMGYDFLAIKTLANRGMIVGVGRRIGVGKESDIFEVATEDGRTLAMKLHRLGRTSFRAVKSKRDYLRHRNSYNWLYLSRLAALKEFAFMKALEEHGFPVPNAVDCNRHCVLMSLVPGYPLVQVKQLQHPKQTFNTIIGQIVRLAEHGLIHCDFNEFNIMIDDEENVTMIDFPQMVSVSHRNAQMYFDRDVDCIFKFFEKRFAANAAEGSDVLEESDSDSDDDRRPCFEAIAKSAGSLDKALAASGFTGQNQDDLEKFVFGNADSNDAPSSDIEDDAEGESFSQETVLGGEKASRLETQESISQEALPGGENASHLKTISVVVNGDCAEVSDHGDNVDSCSASDRVAAISLSNGCNMDQQISAQDTSIQSSTAGDEGGDDESATSDDDPELDRRLEKQRKRAIAAAHGARRSHASRNSSKDKGGRRSYNAKMQMKSLLW*

Protein Length: 514

Fln nts: TAACTTTAACTTTGCCCTTCTAAGACGTGCCAGACGCCTCTAGACGGGCTGTGACGTGTTCAATTTTGAACACTGAATCGCATGTCATTGGCACCCTTCGTACCTCCGGTGGAGCTTGGCTTTCCTGTGACTCGAACCCTGATCGCTAGTCTCTTCGAATCATTTCATTATGAAGTCATGGCGTCGATGAGTTTCTATGAAATGCTCAGATTCTCCAGCCATTAGAAGCACCTTTGGGCAGCCATTATTCTTCATTACTAATTAGCGAGCAGGCTTGCTTGGAGTTTATTTTCAAAAGGGTTTTAAGCTGTCGTGGAATCAATCTGGATTTGTAGTC_-_ATGAAGCTCGATGTCAATGTGTTGCGATATTTATCCAAGGACGAGTTTCGTGTACTCACAGCCGTTGAAATGGGCATGAAAAATCATGAAATTGTCCCAGCAGAGCTTGTGGATCGAATTGCCGGTCTCAAGCATGGGGGCACTTACAAGAATTTGAGAACACTGCTTAGGCATAAGCTTGTGCATCACGATTCATCCAAATATGATGGTTATCGTCTAACCTACATGGGATATGACTTTCTTGCAATAAAGACATTGGCAAACCGCGGCATGATTGTAGGTGTTGGTCGTCGAATAGGTGTTGGGAAAGAATCAGATATTTTCGAGGTTGCCACAGAAGATGGTAGAACATTGGCAATGAAATTGCACAGATTGGGTCGGACATCATTTAGAGCTGTTAAATCTAAGCGTGACTATTTGAGACATCGAAACAGCTATAATTGGCTCTACCTATCAAGACTTGCCGCTCTTAAAGAATTTGCCTTTATGAAGGCCCTTGAAGAACACGGTTTTCCAGTTCCCAATGCAGTAGACTGTAATCGACATTGTGTTCTGATGTCTCTTGTTCCAGGTTATCCTCTGGTCCAAGTTAAGCAGCTGCAACATCCAAAACAAACATTTAATACTATAATTGGCCAAATTGTTCGACTGGCAGAACATGGTCTCATCCACTGTGATTTCAATGAGTTCAATATTATGATTGATGACGAGGAAAATGTCACAATGATTGACTTTCCACAAATGGTTTCTGTCTCTCATCGCAATGCACAAATGTATTTTGATAGAGATGTAGATTGTATATTCAAGTTCTTTGAAAAGAGGTTTGCTGCCAATGCTGCTGAGGGGTCAGACGTGCTAGAAGAATCAGATTCAGATTCGGATGATGATAGAAGGCCATGCTTTGAAGCAATTGCTAAATCAGCTGGTTCCTTGGATAAGGCACTTGCTGCAAGTGGGTTCACAGGACAGAATCAGGATGATTTGGAAAAGTTTGTTTTTGGGAACGCAGATAGTAATGATGCCCCAAGTTCAGATATTGAAGATGATGCAGAAGGAGAATCATTTTCCCAGGAAACTGTGCTTGGTGGTGAAAAAGCTAGTCGTCTTGAGACCCAAGAATCAATTTCCCAGGAGGCTCTGCCTGGTGGTGAAAACGCTAGTCATCTGAAAACCATTTCTGTAGTTGTTAATGGTGATTGTGCAGAGGTTTCAGATCATGGGGATAATGTAGATAGTTGTAGTGCAAGTGACAGGGTTGCTGCCATTTCTCTTAGTAATGGATGCAATATGGATCAACAAATATCTGCACAAGATACAAGTATCCAATCCAGCACTGCAGGAGATGAAGGAGGAGATGATGAATCTGCTACAAGTGATGATGATCCTGAACTTGATAGGCGATTAGAGAAGCAGAGGAAGCGAGCTATTGCAGCAGCCCATGGTGCTAGGAGGTCCCATGCCTCAAGAAATTCTTCGAAGGACAAAGGTGGCAGGAGATCTTATAATGCAAAGATGCAGATGAAATCTCTCCTTTGGTGA___AGTATACCTTTTTGGAATTTTGAGTGTTAATTTTGACAAACTATTACTGGCAGTAGTGTATGAAATGTTTTGAGATATGGTTCTAAATTTGTTATATTCGTAGAGGGTTAAACTAATATTGTTTATCTGTTAGCAAGTTAATGAGTCACAATGACACGAGTTTTAAATGTAGCAACGTGACCTTCTTTTAGGCTGTTATTCTAGTTGTGTTTAATACAGTGTTTGAGTTCACTTGGTAAGAGTAAATAGATGTCATAACCTGCAGACTGATCTCTGATCCAGATCGGTTGTTCTTTAATACAAGGTGTTGCGATTAAGTTTTCAAGGGTTGACCAAACTTAACAATGTTGAGCTTTCGCCCGTGTCAATTTGTTTGTATATATAATATTTGCCATTTTGTCAATTTGTCAATATAATATGCTCCGCTCCATTCCTTT

Fln Alignment:

sp_v1.1_unigene908___MKLDVNVLRYLSKDEFRVLTAVEMGMKNHEIVPAELVDRIAGLKHGGTYKNLRTLLRHKLVHHDSSKYDGYRLTYMGYDFLAIKTLANXXXXXXXXXXXXXGKESDIFEVATEDGRTLAMKLHRLGRTSFRAVKSKRDYLRHRNSYNWLYLSRLAALKEFAFMKALEEHGFPVPNAVDCNRHCVLMSLVPGYPLVQVKQLQHPKQTFNTIIGQIVRLAEHGLIHCDFNEFNIMIDDEENVTMIDFPQMVSVSHRNAQMYFDRDVDCIFKFFEKRFAANAAEGSDVLEEXXXXXXXDRRPCFEAIAKSAGSLDKALAASGFTGQNQDDLEKFVFGNADSNDAPSSDIEDDAEGESFSQETVLGGEKASRLETQESISQEALPGGENASHLKTISVVVNGDCAEVSDHGDNVDSCSASDRVAAISLSNGCNMDQQISAQDTSIQSSTAGDEGGDDESATSDDDPELDRRLEKQRKXXXXXXXXXXXXXXXXXXSKDKGGRRSYNAKMQMKSLLW
B9T518_____________MKLNVDVLRYLSKDDFRVLTAVEMGMRNHEIVPSELIDRIASLKHGGTYKVLKNLLKHKLLHHDSSKYDGFRLTYLGYDFLAIKTMVNRGVFAAVGRQIGVGKESDIFEVATEDGTVLAMKLHRLGRVSFRAVKSKRDYLRHRSSYNWLYLSRLAALKEFAFMKALEEHGFPVPNAVDCNRHCVIMSLVQGYPLVQVKQLQNPETVFETILGLVIRLAEHGLIHCDFNEFNIMIDDDEKVTMIDFPQMVSVSHRNAQMYFDRDVECIFKFFRKRFNLSFQENADENDDSEVDADESGRPSFSSISKTSGYLDKELAASGFTRKDQDHIEKFIEGDVEKDSGSDSEGAENEEHVAELNETALRSLDSLHLQEQE-------------------------ECASGSDKEDKVD-----------ELHQICEADKHNGSEAQEV----SGKE--EDGETVDENDPELMKSLNKQRRRAIAAARGGRRNLASRNSYKDKGGRSSHNSKIQKQLSGW

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
1309	42		57		1.0
1318	57		42		1.0
1336	85			14	0.993533
1340	42			57	1.0
1352	33		66		1.0
1375		25		75	0.996473
1402	75	25			0.996473
1444	25		75		0.996473
1454		25		75	0.996473
1456	25		75		0.996473
1473	25			75	0.996473
1476			25	75	0.996473
1479	25			75	0.996473
1480			25	75	0.996473
1487			75	25	0.996473
1491			25	75	0.996473
1492	25			75	0.996473
1494	75		25		0.996473
1529			25	75	0.996473
1591		20		80	0.995493
1592	80	20			0.995493
1593	80	20			0.995493
1604	40		60		1.0
1633	25		75		0.996473
1688		33		66	0.997452
1888	80			20	0.995493
1890	80	20			0.995493
1894			20	80	0.995493
1895	20	80			0.995493
2002			40	60	1.0
2004		60	40		1.0
2009		40	60		1.0
2014		60	40		1.0
2016		40		60	1.0
2018	60	40			1.0
2019	60		40		1.0
2022		60	40		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain