SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene903

Length: 2397 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene903
ATGGGGCGGGAAAACATTTCCCGCCATGTTTTTGGCGCCAAAGCCAGTCGCGCGGAGAAATTTTAGGGAGAAAACCAGGCGAGAGGTTCTATTTCGGCGACAGAATTCGTTAACTGCTGTAAACCCATCAAACCACGCGTACAGATATCGAATTAATCTCCAATGGGGGGTCCCGCATTTGATTGCTTGAGAAACCCTCTGGGTGCCGTAAGATTCATGTTTGATAAAGCTGTCTCCGCAGGGGCTGATCCCTCGAAGCTTGGCAGGGGCGACTGGGGAGCGGCCGAGTTGTTCCACAAGTTTATCTTCCAGGACGGGGGTCTACTGCGAATCCCGGAATTAAATTCTGTGAAGCTAGACTCCATTCAGCCCAATTCTCTCGTACGGTTTCGTGGAATGGTGCAAGATATGTTCGAAACAGAGTTTTATATTGGCGCTTTCAAGGATGGTTTGTCATGGAAAACGAATAAGTATGCAGACATTGCCTCTGTGCAAATGGCGTCAAACGCACAAATGGAAATGTGGGATCGTCGTCTTCTGTACTGTGTTCCCGTTCCTGGAGAGAATACGTGGGTGAGAGAAGCTTCTACTTCCAAAGACTGCATTGCATTGGGATGTATTCCTACACAACAGAGGGGGAAGCGTGAACGTGATGCATCTGATGCAACAATGGATACTGAGTTAATGGATGTTGAAGTTGGGGCATCAAATGAGGTCAAGAGACAGCGTGAAGAGGGCGTCGCTTCATGTTGTGCAATGGAAACCCGTGAGGGGCAATCCAATGGAATTGAGTTTGACCTCAACATGCCACTTGGTGAGACCAAATCACTACCCTGCCTGGTCAAGATGTATGATGGTCTGGATGCAGAACTGAAGCTAAATGATATTGCAGAGTTCATTGGTGTGTTCACCTTTGATCCTGAGCTATCAGCCCCCATCGTTCAAGACACTACTGGGAATTCCCTGTTTGATGAGGATATTTCAAGGCATTTGCCTGCTAGCAAGGTACCTCGCCTGCATTGTATCACAATACGGAAGCTCGCTAGTGGCAATTTGGCCTCGTTATATGAAAGTTCTGAGGTGCCTTCAACAATGCTTGTGATGAGGGAATTGAGAGAGTCCTTGCTCCAAAGCCTCACAACTGTCTTTGGAGGAGATTCTCTTGCAGCACATTATTTCCTGTTACACATTCTCTCACAGGTTCATGCCAGAGTTGAGCCTGTTGCAGTGGGCAAGCTGTCTTTGAATTTGACAGAGATTGGAAGAGCAGCAAATGGGTGTCAGTTTACCAAGATATTGGCTGAGGCTATTCAAGAGCTGCTACCTTGTTCACATTTTGTCCCTTTAACAATAGAGTATCTCAATAAGGCTTCAGTTGCACCACGAAAAAACTACCAAACAAATAGGCTTGTAACTGGTGCCTTGCAGCTAGCATCAGGAACTCACCTGACAATTGACGAGACCCAATTGAAAGCTGGAACTTTAAATTCAACAGGGATTCACAATGTTCAGATATTTAGGAATATGTTGGAGTGGCAAAAGGTGGAGTATGATTTTCAATATTACACAATGGACATGCCAGCTGATATTCAAGTTCTTATACTCTCAGATGGGAAGTCTAATATGTTTCCAGCTGATGTAGTGCTCCCTTACAGACCTACATCAGATGTGGGTCCCTTAAGTGCAAGTCCATTGGAGAAACAACAATGGCGACTGTACTTGAGTATGACAAAATCATTTGACCATACCATTGAGGCTGCCATGCAGCAGGTAGTTGAAGATGATATGGTAGCAGCTAGGCAAGATGATAGATCTATTGGCACAGAGGTTTTCAGCAGATGGCTTACCATGGCACGCTTGGTTTCTTTGAGTTATGGGGAAAGGAGATTATCTGCTGATCACTGGAAGATAGTAAAGGATCTCGAGAAGCAGCGTTCTGCTAGGCTTTGTGCTGCATGAGATTTATGATTAGAATTATACCACTACTGCCAAAAAGGTTGGCAAGTATATGCAATAGTGGGTAGGCCCTAAGTGCACTCTTTTTGGTTACATTTTTCTTGTGCACATAAGGTTTTGTAAAATTCAATTGCAAATACCCGGCAAGCAGGGATTAGTTTGCAATGTAAAGTAATAGTTTATGGCAGTGATGGTTTTATGATCTACTTGTATAAAATCCCAGAGGATGAGGCACATGACCTTTGGAATTGTCTCTTGCTAACATAGGTAGTTTGACTTTTAATTGATGAAGAAAATGAGAAATTTACTATAGTCAGAGTATCCTTAGCTCAGCAGTAAGCTTTTGAAGATCTATAAATGATGATTAAGGAATATAACAGTGTGGTAACTTGTTCTTCCATGGACTTAAATTGACACTGTTCTTTACACATAACTTAAACC

Ace file of the UniGene sp_v1.1_unigene903

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ETG1; ETG1 (E2F TARGET GENE 1)	-	-	46%
FL-Next	sp=Mini-chromosome maintenance complex-binding protein; Arabidopsis thaliana (Mouse-ear cress).	-	-	46%
Blast2go	etg1 (e2f target gene 1)	-	-	62%

Source	GOs	Term	Type	Identity
Blast2go	DNA replication	GO:0006260	Biological Process	62%
Blast2go	sister chromatid cohesion	GO:0007062	Biological Process	62%
Blast2go	DNA repair	GO:0006281	Biological Process	62%
Blast2go	nuclear replisome	GO:0043601	Cellular Component	62%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Mini-chromosome maintenance complex-binding protein	IPR019140	-	0.0	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q501D5

Fln msg:

Fln protein: MGGPAFDCLRNPLGAVRFMFDKAVSAGADPSKLGRGDWGAAELFHKFIFQDGGLLRIPELNSVKLDSIQPNSLVRFRGMVQDMFETEFYIGAFKDGLSWKTNKYADIASVQMASNAQMEMWDRRLLYCVPVPGENTWVREASTSKDCIALGCIPTQQRGKRERDASDATMDTELMDVEVGASNEVKRQREEGVASCCAMETREGQSNGIEFDLNMPLGETKSLPCLVKMYDGLDAELKLNDIAEFIGVFTFDPELSAPIVQDTTGNSLFDEDISRHLPASKVPRLHCITIRKLASGNLASLYESSEVPSTMLVMRELRESLLQSLTTVFGGDSLAAHYFLLHILSQVHARVEPVAVGKLSLNLTEIGRAANGCQFTKILAEAIQELLPCSHFVPLTIEYLNKASVAPRKNYQTNRLVTGALQLASGTHLTIDETQLKAGTLNSTGIHNVQIFRNMLEWQKVEYDFQYYTMDMPADIQVLILSDGKSNMFPADVVLPYRPTSDVGPLSASPLEKQQWRLYLSMTKSFDHTIEAAMQQVVEDDMVAARQDDRSIGTEVFSRWLTMARLVSLSYGERRLSADHWKIVKDLEKQRSARLCAA*

Protein Length: 600

Fln nts: ATGGGGCGGGAAAACATTTCCCGCCATGTTTTTGGCGCCAAAGCCAGTCGCGCGGAGAAATTTTAGGGAGAAAACCAGGCGAGAGGTTCTATTTCGGCGACAGAATTCGTTAACTGCTGTAAACCCATCAAACCACGCGTACAGATATCGAATTAATCTCCA_-_ATGGGGGGTCCCGCATTTGATTGCTTGAGAAACCCTCTGGGTGCCGTAAGATTCATGTTTGATAAAGCTGTCTCCGCAGGGGCTGATCCCTCGAAGCTTGGCAGGGGCGACTGGGGAGCGGCCGAGTTGTTCCACAAGTTTATCTTCCAGGACGGGGGTCTACTGCGAATCCCGGAATTAAATTCTGTGAAGCTAGACTCCATTCAGCCCAATTCTCTCGTACGGTTTCGTGGAATGGTGCAAGATATGTTCGAAACAGAGTTTTATATTGGCGCTTTCAAGGATGGTTTGTCATGGAAAACGAATAAGTATGCAGACATTGCCTCTGTGCAAATGGCGTCAAACGCACAAATGGAAATGTGGGATCGTCGTCTTCTGTACTGTGTTCCCGTTCCTGGAGAGAATACGTGGGTGAGAGAAGCTTCTACTTCCAAAGACTGCATTGCATTGGGATGTATTCCTACACAACAGAGGGGGAAGCGTGAACGTGATGCATCTGATGCAACAATGGATACTGAGTTAATGGATGTTGAAGTTGGGGCATCAAATGAGGTCAAGAGACAGCGTGAAGAGGGCGTCGCTTCATGTTGTGCAATGGAAACCCGTGAGGGGCAATCCAATGGAATTGAGTTTGACCTCAACATGCCACTTGGTGAGACCAAATCACTACCCTGCCTGGTCAAGATGTATGATGGTCTGGATGCAGAACTGAAGCTAAATGATATTGCAGAGTTCATTGGTGTGTTCACCTTTGATCCTGAGCTATCAGCCCCCATCGTTCAAGACACTACTGGGAATTCCCTGTTTGATGAGGATATTTCAAGGCATTTGCCTGCTAGCAAGGTACCTCGCCTGCATTGTATCACAATACGGAAGCTCGCTAGTGGCAATTTGGCCTCGTTATATGAAAGTTCTGAGGTGCCTTCAACAATGCTTGTGATGAGGGAATTGAGAGAGTCCTTGCTCCAAAGCCTCACAACTGTCTTTGGAGGAGATTCTCTTGCAGCACATTATTTCCTGTTACACATTCTCTCACAGGTTCATGCCAGAGTTGAGCCTGTTGCAGTGGGCAAGCTGTCTTTGAATTTGACAGAGATTGGAAGAGCAGCAAATGGGTGTCAGTTTACCAAGATATTGGCTGAGGCTATTCAAGAGCTGCTACCTTGTTCACATTTTGTCCCTTTAACAATAGAGTATCTCAATAAGGCTTCAGTTGCACCACGAAAAAACTACCAAACAAATAGGCTTGTAACTGGTGCCTTGCAGCTAGCATCAGGAACTCACCTGACAATTGACGAGACCCAATTGAAAGCTGGAACTTTAAATTCAACAGGGATTCACAATGTTCAGATATTTAGGAATATGTTGGAGTGGCAAAAGGTGGAGTATGATTTTCAATATTACACAATGGACATGCCAGCTGATATTCAAGTTCTTATACTCTCAGATGGGAAGTCTAATATGTTTCCAGCTGATGTAGTGCTCCCTTACAGACCTACATCAGATGTGGGTCCCTTAAGTGCAAGTCCATTGGAGAAACAACAATGGCGACTGTACTTGAGTATGACAAAATCATTTGACCATACCATTGAGGCTGCCATGCAGCAGGTAGTTGAAGATGATATGGTAGCAGCTAGGCAAGATGATAGATCTATTGGCACAGAGGTTTTCAGCAGATGGCTTACCATGGCACGCTTGGTTTCTTTGAGTTATGGGGAAAGGAGATTATCTGCTGATCACTGGAAGATAGTAAAGGATCTCGAGAAGCAGCGTTCTGCTAGGCTTTGTGCTGCATGA___GATTTATGATTAGAATTATACCACTACTGCCAAAAAGGTTGGCAAGTATATGCAATAGTGGGTAGGCCCTAAGTGCACTCTTTTTGGTTACATTTTTCTTGTGCACATAAGGTTTTGTAAAATTCAATTGCAAATACCCGGCAAGCAGGGATTAGTTTGCAATGTAAAGTAATAGTTTATGGCAGTGATGGTTTTATGATCTACTTGTATAAAATCCCAGAGGATGAGGCACATGACCTTTGGAATTGTCTCTTGCTAACATAGGTAGTTTGACTTTTAATTGATGAAGAAAATGAGAAATTTACTATAGTCAGAGTATCCTTAGCTCAGCAGTAAGCTTTTGAAGATCTATAAATGATGATTAAGGAATATAACAGTGTGGTAACTTGTTCTTCCATGGACTTAAATTGACACTGTTCTTTACACATAACTTAAACC

Fln Alignment:

sp_v1.1_unigene903___MGGPAFDCLRNPLGAVRFMFDKAVSAGADPSKLGRGDWGAAELFHKFIFQDGGLLRIPELNSVKLDSIQPNSLVRFRGMVQDMFETEFYIGAFKDGLSWKTNKYADIASVQMASNAQMEMWDRRLLYCVPVPGENTWVREASTSKDCIALGCIPTQQRGKRERDASDATMDTELMDVEVGASNEVKRQREEGVASCCAMETREGQSNGIEFDLNMPLGETKSLPCLVKMYDGLDAELKLNDIAEFIGVFTFDPELSAPIVQDTTGNSLFDEDISRHLPASKVPRLHCITIRKLASGNLASLYESSEVPSTMLVMRELRESLLQSLTTVFGGDSLAAHYFLLHILSQVHARVEPVAVGKLSLNLTEIGRAANGCQFTKILAEAIQELLPCSHFVPLTIEYLNKASVAPRKNYQTNRLVTGALQLASGTHLTIDETQLKAGTLNSTGIHNVQIFRNMLEWQKVEYDFQYYTMDMPADIQVLILSDGKSNMFPADVVLPYRPTSDVGPLSA-SPLEKQQWRLYLSMTKSFDHTIEAAMQQVVEDDMVAARQDDRSIGTEVFSRWLTMARLVSLSYGERRLSADHWKIVKDLEKQRSARL
Q501D5_____________MGGPAYDCLTNPLGAVRFSFVNALSSGYDPASSVGKDWGVVDLFRHYFSDESAISQVPILDSSSIKWVQPKTLVRFRGMIQDMLGNEFYAGAYKDDSTWRTNKYSDVSQFPEGSSTEIQVWERRLLYCVPVPGKNQWT-ECSSQELKNRFLDLTGQNREKRVRVDEEMTDSMDSSTLEAGRNGSPFKKMKVGEATSSASESQVPQTSGIP-----PATSADSLPCLVKIYDSPESDLKLNDVVEFLGVLTFDPIVMMDTDTLDENSDALSEAESVQMPSGKVPRLHCLIHRKLETQHFLHGSSLLPEPKSPQIFKEIRESLMKYLTGLLGNDHIAAQFLLLHLLSKVHGRVDNVAVGKLSLNLIHLNKESMSIFGTQ-LSGALKSLLPFTQSIPLTIEYLNTASFGPKKDYGINRLMPGVLQIADGTHLILDETELQPGTLNSVGVENANLLKNLLECQKVEYDFQYYKMEMATDVQMLIFSEGKSNIMPADLVLPLQP-SQVNSLEVITPETAETWRCYLATCKSLSHSIGQELQQVVENDLVAARQTDRSLGSQDLSRLLTMARMMSVSYGETTLSLEHWQMVLELERLRKERL

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
525			25	75	0.996473
596		75	25		0.996473
618			20	80	0.995493
756		25	75		1.0
1241			90	9	0.999872
1269	18		81		1.0
1359	12			87	0.992554
1382	87			12	0.992554
1812	95		4		0.996252
1856	83		5	10	1.0
1857		94	5		0.999995
1858	3		87	5	0.999357
1860		7		86	1.0
1862		11	88		1.0
1863	11		88		1.0
2266	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain