SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene899

Length: 441 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene899
CCACAATACTTCAATGAGTTTTATGCTACTTCCAGAGTGGGCCCTGTCCATACAAATGCAGGATGGTTTAATGACTTCCTAAACACCATATTCTCGTCACCACCGACGGTTGCACTAATTATTGCGTTATTTCTAGATAACACTCTAGAAGTGGAGCATTCCAAGAAGGATAGAGGGATGCCATGGTGGGTAAAATTTAGAACATTCAGAGGGGACAGTCGGAATGAGGAGTTCTACACTCTACCATTCAATCTCAATAAGTTTTTCCCCCCAACATGATTTTGAGGATCTGTTGTAAGATTGGATAATGCCCACCAGCAAATTGTCAACTGAATGTATCATTATGATATTTCCAATTGGTTCATGAATTGGGATACTCAATCCTAAGGAGATGGTAACAGGCATGCATCTCCCAATGATTGAGTCATCAACCTTGCAGAG

Ace file of the UniGene sp_v1.1_unigene899 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Purine permease, putative n=1 Tax=Ricinus communis RepID=B9SH61_RICCO	-	-	9.99995e-41	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Blast2go	nucleobase ascorbate transporter	-	-	0.0	86%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Xanthine/uracil/vitamin C permease	IPR006043	-	0.0	86%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ21

Fln msg: your sequence is shorter than subject: 93 - 524

Fln protein: PQYFNEFYATSRVGPVHTNAGWFNDFLNTIFSSPPTVALIIALFLDNTLEVEHSKKDRGMPWWVKFRTFRGDSRNEEFYTLPFNLNKFFPPT*

Protein Length: 94

Fln nts: CCACAATACTTCAATGAGTTTTATGCTACTTCCAGAGTGGGCCCTGTCCATACAAATGCAGGATGGTTTAATGACTTCCTAAACACCATATTCTCGTCACCACCGACGGTTGCACTAATTATTGCGTTATTTCTAGATAACACTCTAGAAGTGGAGCATTCCAAGAAGGATAGAGGGATGCCATGGTGGGTAAAATTTAGAACATTCAGAGGGGACAGTCGGAATGAGGAGTTCTACACTCTACCATTCAATCTCAATAAGTTTTTCCCCCCAACATGA___TTTTGAGGATCTGTTGTAAGATTGGATAATGCCCACCAGCAAATTGTCAACTGAATGTATCATTATGATATTTCCAATTGGTTCATGAATTGGGATACTCAATCCTAAGGAGATGGTAACAGGCATGCATCTCCCAATGATTGAGTCATCAACCTTGCAGAG

Fln Alignment:

sp_v1.1_unigene899___PQYFNEFYATSRVGPVHTNAGWFNDFLNTIFSSPPTVALIIALFLDNTLEVEHSKKDRGMPWWVKFRTFRGDSRNEEFYTLPFNLNKFFPPT
B8LQ21_____________PQYFNEFYATSRVGPVHTNAGWFDDFLNTIFSSPPTVALIIAVFLDNTLEVEHSKKDRGMPWWVKFRTFRGDSRNEEFYTLPFNLNKFFPPT

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
3	20	80			0.995493
4	12			87	0.992554
130	11		88		0.923564
160	88		11		0.923564
162	88		11		0.923564
164		88	11		0.923564
166		11		77	0.968132
167	11		77	11	0.968132
168			22	77	0.999999
169		11		88	0.923564
170		11	77	11	0.968132
171	12		87		0.992554
172	12		87		0.992554
175			88	11	0.923564
176	88	11			0.923564
178	88	11			0.923564
179	88		11		0.923564
182			10	90	0.90298
237	90		10		0.90298
240		10		90	0.90298
241	10			90	0.90298
242		90	10		0.90298
243		10		90	0.90298
244	90	10			0.90298
247			10	90	0.90298
248			10	90	0.90298
250		10		90	0.90298
254		90	10		0.90298
257		88	11		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain