SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene898

Length: 1689 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene898

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	clathrin assembly protein, putative (EC:1.3.1.74)	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	65%
Blast2go	protein	-	-	61%

Source	GOs	Term	Type	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	61%
Blast2go	nucleus	GO:0005634	Cellular Component	61%
Blast2go	cytosol	GO:0005829	Cellular Component	61%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NW76

Fln msg: your sequence is longer than subject: 413 - 351

Fln protein: LLEHFIACRPTGPAKSNRLVQTALYPIVRESFQLYGHICDGLAVILDRFFDMEYQDSAKAFEMYLRAAKKVGELASFYNLCRNMGVCRTAEYPEVQMISEQLLRTLEEYLSERSSSRNERPKSPEPEPEKLQSPGPISEEPAEGLNNRKALPAPGHDANNEPEETQKLTKQPEGDLLNVNNATISSKELENKFALALFSGSSQSDATKEWEAFPPSDKGSGKASAWETPLTEKGKAGWELALVESVSNLRKQGGSMAGGFDSLLVEGLYDQAVAHQQHMSHLMAPGSASSVALPGRQSSSFLSLPAPTTYTRDDPFAASCNVVPTGEDPFAASLNVPPPSYVQMSDMSKKQNLLVQEQQFWQQYQKDGMQGQHGIMKLYSNSYGMPAQNSFGVPPYGMPHMEGYMPTYRAYY*

Protein Length: 414

Fln nts: GGCTTTTGGAACATTTCATTGCCTGCCGCCCTACAGGTCCAGCAAAGAGTAACAGATTGGTTCAAACTGCTCTTTATCCTATTGTAAGGGAGAGCTTTCAGCTTTATGGTCATATCTGTGATGGCTTGGCTGTTATCCTGGATAGATTCTTTGACATGGAGTATCAGGATTCTGCCAAGGCATTTGAGATGTATTTAAGAGCAGCAAAGAAAGTTGGAGAACTGGCATCCTTTTATAACTTGTGCAGAAACATGGGAGTGTGTAGAACCGCAGAATATCCAGAAGTGCAAATGATTTCAGAGCAACTACTTAGGACATTGGAGGAATATTTAAGTGAGAGGTCATCTTCTCGCAATGAAAGGCCTAAGAGTCCTGAACCAGAGCCAGAGAAGTTGCAAAGTCCTGGCCCAATATCAGAAGAACCAGCCGAGGGTTTAAATAACAGAAAAGCGCTTCCAGCTCCTGGACATGATGCAAATAATGAACCTGAGGAAACACAGAAGTTAACAAAACAGCCAGAGGGAGATTTATTAAATGTAAACAATGCGACCATTTCGTCGAAAGAACTAGAGAACAAGTTTGCATTAGCACTCTTTAGTGGTTCTTCACAATCGGATGCTACAAAGGAATGGGAGGCATTTCCACCTTCTGACAAGGGATCAGGGAAGGCCTCTGCATGGGAAACACCATTGACTGAAAAAGGAAAGGCTGGTTGGGAGCTTGCGCTTGTAGAGTCAGTCAGCAATCTTAGAAAACAAGGAGGCTCAATGGCAGGTGGTTTTGATAGCTTGCTCGTGGAGGGCTTGTATGACCAAGCTGTAGCCCATCAGCAGCATATGTCACATCTTATGGCACCTGGAAGTGCAAGCAGTGTTGCCCTACCTGGTCGACAGTCATCTTCATTTCTTTCATTGCCTGCCCCAACGACATACACTCGAGATGATCCGTTTGCTGCATCCTGTAATGTTGTCCCAACTGGAGAGGATCCATTTGCTGCATCCTTAAATGTCCCACCGCCTTCATATGTTCAGATGTCAGATATGTCAAAGAAACAGAACCTTTTAGTGCAAGAGCAGCAGTTTTGGCAGCAGTATCAGAAGGATGGCATGCAGGGGCAACATGGCATCATGAAATTGTATTCTAATTCTTATGGAATGCCTGCTCAAAACTCCTTTGGCGTGCCTCCTTATGGCATGCCACATATGGAAGGATATATGCCAACTTATCGAGCCTATTATTAA___TCATGATCTTTTATAGCAAACTATTTAGCTGGCTTTCTTAGGCACTGATTCAGAGTCCACTAGTTATGTCGATGGAGTTTGTGGGCATAAGAGAGGAAAAACATACCACAAATCTGGAGTTTTGCAATGCAGAGGAGATGGGCTCAAAGACATCGGATGAAGACTTAAAGAATCAGGCATTTGATTTAGAGGCAGTCAATTACTTGTAAATTCTTGTGAATGGATACAATTTTAATGAATTGCGATTTACCAGACACTCTTGTTTGATTGTCTGAAATGATAATATTTGTGGTATGATTGAGAGAGGTGACAAACGCAAGATCTTTGCAGGCATATGATCAGATTCACACTTTTGCTGCGTCATGTACTTATCTCAGTAAATTATAAACATAAAAACACACTGGAATCAGATTTTATGACGACATCATTTAGACATAGGGTTTTATGA

Fln Alignment:

sp_v1.1_unigene898___LLEHFIACRPTGPAKSNRLVQTALYPIVRESFQLYGHICDGLAVILDRFFDMEYQDSAKAFEMYLRAAKKVGELASFYNLCRNMGVCRTAEY
A9NW76_____________LLERFLASRPTGAAKNNRLVQIALYSIVRESFQLYKDITDGLAILLDGFFDMEYQDCVNSFETYSKAAKQIDELASFYNMCRWQNWLRNNSY

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
894		12	87		0.992554
948			71	28	1.0
976	85	14			0.993533
995		71		28	1.0
997	14		85		0.993533
1103	83	16			0.994512
1206		11	88		0.923564
1208	88			11	0.923564
1209	88	11			0.923564
1213		11		88	0.923564
1214	88	11			0.923564
1219		88	11		0.923564
1221	88			11	0.923564
1222	88		11		0.923564
1225		11		88	0.923564
1312	11	88			0.923564
1424		11		88	0.923564
1426	88			11	0.923564
1427		11		88	0.923564
1428			11	88	0.923564
1433		11	88		0.923564
1434		11	88		0.923564
1435		88		11	0.923564
1436	88			11	0.923564
1438			11	88	0.923564
1440	87			12	0.992554
1441	87		12		0.992554
1443		12		87	0.992554
1447		14		85	0.993533
1448	14		85		0.993533
1538	33		66		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain