SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene893

Length: 2861 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene893
TGAATTTCAGTTTGAAGTTTTGAATGATGATGGTCCAGATTTGAAAAGTATATTTTTAATTGCATATATACCGAGAGGTGCAGGATCCAAACAAAAAAGAAGTTGTGTACCAGTCCCCATTATCTGTGACTGGACCTCTGGATGGGGTTCCTGTGGCAGCACGATACCAATCCCTGGACATTATTGAACGGAAGCGTCTTCTTGCACGGAGGAATAATACGACATACTGTTATGATTTTCCATTGGTTTTTGAGACATCATTGCGGCGCATTTGGACATCTGGCCTTCAGAATGGAGATACATGCAATGACAAAGTTAAATTCAAAGCTCGGGAGCTCATATTTTCTGAAAAGCAGGGCACTTGGGAAACTCCACTGGTCACTGCAGAGCGAGCTGTTGCAACAAATGATGTAGGGATGGTAGCTTGGTGCATGGAGATGAGCACTCCTGAGTTCCCTGGTGGACGGACTATTTTAGTGGTGGCAAATGATGTTACACATAATGCAGGTTCTTTTGGTACAAGAGAAGATGCCTTTTTTGCTTCTGTGACAGATCTTGCTTGTCAAAAGAAATTGCCTTTGATTTATTTGGCTGCCAACTCTGGTGCAAGAATTGGAGTGGCAGCAGAAGTCAAAGCTTGCTTTAAAGTTGGATGGTTTGATGAGTTGTCTCCAGACCGTGGGTTTCAATATCTTTATCTCACTCCAGAAGACTACAAGCTCATTGGTCCGTCTGTAATAGCACATGAACTAAAGCTAGAATCTGGCGAAATCAGATGGATTATAGATGACATCATTGGTAAGGAAGATGGACTAGGTGTGGAGAATTTATCAGGCAGTGGAGCAATTGCAGGTGCTTATTCAAGGGCATATCAGGAAACTTTCACATTGACATATGTAACAGGCAGAACAGTTGGTATTGGTGCATACCTTGCGAGATTAGGAATGCGCTGCATTCAGCGCCTTGATCAACCTATAATTCTCACTGGATACTCAGCTCTAAATAAGCTTCTTGGACGGGAAGTGTACAGCTCTCATATGCAATTAGGAGGCCCAAAAATCATGGCAACAAATGGTGTTGTTCATCTCACTGTATCTGATGATTTAGAAGGTGTCTCAGCCATCTTGAAGTGGCTTAGCTATATTCCTCCATATATAGGAGGACCTCTTCCTATTCTGAAGCCTCTAGATCCTCCAGATAGACCAGTTGAATATGCTCCAGAGAATTCATGTGATCCTCGCGCAGCTATTCGTGGTGTAGAAGATAATGGTAGGTGGCTTGGTGGCCTCTTTGACAAAGAGAGCTTCACAGAGACATTAGAAGGGTGGGCAAAAACAGTGGTTACTGGGCGAGCGAAGCTTGGGGGCATCCCTGTGGGAGTTATTGCTGTTGAGACCCAAACAGTGATGCAGGTGATTCCCGCAGACCCTGGTCAACTTGATTCTGCTGAGAGAGTAGTTCCCCAAGCAGGCCAGGTCTGGTTTCCAGATTCAGCATGTAAAACAGCACAATCCTTGCTAGATTTTAACAAGGAAGAGCTTCCTCTGTTTATCTTGGCGAACTGGAGAGGGTTCTCTGGTGGTCAAAGGGATCTTTTTGAAGGAATTCTTCAAGCTGGATCTACCATTGTGGAGAATCTCCGCACATACAAGCAACCTGTGTTTGTTTACATACCAAAAACAGGGGAACTGCGGGGAGGAGCATGGGTGGTAGTTGATAGCAAGATAAATTCGGATGAAGTTGAAATGTATGCAGAAACAACAGCAAAAGGTGGTGTACTAGAACCAGAGGGAATGATTGAAATCAAATTCCGTACGAAAGATCTGCTTGAATGCATGCATAGGCTTGATCCGAATCTCATTTCACTTAAGATTAAGTTACAGGAAGCCAAGGATGATCATCCCGGGGCTGAAGTAATACGACAGCAAATTAAAGCTCGGGAAAAACAGCTGCTTCCTTTTTATAAGCAGATTGCCATCAGATTTGCTGAGTTGCATGACACGTCCTTCAGAATGGCAGCAAAAGGGGTTGTGAAAAAAGTTCTAAAATGGGAAGACTCACGAATCTTTTTCTACAAGAGATTGAACCGAAGATTAACAGAGTCTTCTTTGATTAAGGATGTAAGAGATGCTTCTGGAAACAAACTATCTCATAAATCAGCTTTGCGTTTGATTAAGGATTGGTTTTTGGCTTCAAAGGTTGATTCTGGAGAGGAGTTATGGAAAGATGATGCTGCTTTCTTGGCATGGAAAGATGATCCTAGCAAGTTTGAGTCCTATTTACAAGAATTAAGAGCGCAGAAAGTTTGCAGACAGCTATTGGATATAGGAAATTCTAAGGAAGAGTTGCAAGCATTGCCTGAAGGTCTAGCTGCTCTTCTAAAAAAGGTTCAACCATCAATGAGATCAGAGCTGGTGGAAAAACTTCGAGAAGTTCTTAATTCATGAGATTGATAATCATGCCAGTAGAGAGTTTGACTACTTTTGGGGTCTTTTATTTTCTTTATTTGTAATTAATAATTATGAATGACCAGGAATTATCTTGGCAGTAGAATATGAATGTGTATTTGTGGAGTGGTCATAATGCTTTTCCATGGGGCTGCCAAGATATACTAGTGTAGTTTGGTTTATTCCCCAATTTGGTTATGATTGCAACATTTGTATTTTCTTGCAAATGGTAAAACATCTCCTGTTGTTTTTCCTACGAATCTAGTTGATGTAGCAGATGGATGTACGATGGAACACACGTTCTCCACTGAGCTGGAAGAGCTTGACCTGATGGCCTTACTGTAAAACATTCAGTTCTCTTCCCATGTAAGGACATAAATGGCAAGGAAATAAATAAGAAATTATATTTCATTC

Ace file of the UniGene sp_v1.1_unigene893 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Acetyl-CoA carboxylase n=3 Tax=Euphorbiaceae RepID=D2CFN2_9ROSI	-	-	71%
FL-Next	sp=Acetyl-CoA carboxylase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	71%
Blast2go	acetyl- carboxylase	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	root development	GO:0048364	Biological Process	83%
Blast2go	response to cytokinin stimulus	GO:0009735	Biological Process	83%
Blast2go	primary shoot apical meristem specification	GO:0010072	Biological Process	83%
Blast2go	fatty acid elongation	GO:0030497	Biological Process	83%

Source	InterPros	Term	Type	Identity
Blast2go	Carboxyl transferase	IPR000022	-	83%
Blast2go	Acetyl-coenzyme A carboxyltransferase, N-terminal	IPR011762	-	83%
Blast2go	Acetyl-coenzyme A carboxyltransferase, C-terminal	IPR011763	-	83%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q38970

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 815 - 2254

Fln protein: NFSLKF*MMMVQI*KVYF*LHIYREVQDPNKKEVVYQSPLSVTGPLDGVPVAARYQSLDIIERKRLLARRNNTTYCYDFPLVFETSLRRIWTSGLQNGDTCNDKVKFKARELIFSEKQGTWETPLVTAERAVATNDVGMVAWCMEMSTPEFPGGRTILVVANDVTHNAGSFGTREDAFFASVTDLACQKKLPLIYLAANSGARIGVAAEVKACFKVGWFDELSPDRGFQYLYLTPEDYKLIGPSVIAHELKLESGEIRWIIDDIIGKEDGLGVENLSGSGAIAGAYSRAYQETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGYSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEGVSAILKWLSYIPPYIGGPLPILKPLDPPDRPVEYAPENSCDPRAAIRGVEDNGRWLGGLFDKESFTETLEGWAKTVVTGRAKLGGIPVGVIAVETQTVMQVIPADPGQLDSAERVVPQAGQVWFPDSACKTAQSLLDFNKEELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPKTGELRGGAWVVVDSKINSDEVEMYAETTAKGGVLEPEGMIEIKFRTKDLLECMHRLDPNLISLKIKLQEAKDDHPGAEVIRQQIKAREKQLLPFYKQIAIRFAELHDTSFRMAAKGVVKKVLKWEDSRIFFYKRLNRRLTESSLIKDVRDASGNKLSHKSALRLIKDWFLASKVDSGEELWKDDAAFLAWKDDPSKFESYLQELRAQKVCRQLLDIGNSKEELQALPEGLAALLKKVQPSMRSELVEKLREVLNS*

Protein Length: 816

Fln nts: TGAATTTCAGTTTGAAGTTTTGAATGATGATGGTCCAGATTTGAAAAGTATATTTTTAATTGCATATATACCGAGAGGTGCAGGATCCAAACAAAAAAGAAGTTGTGTACCAGTCCCCATTATCTGTGACTGGACCTCTGGATGGGGTTCCTGTGGCAGCACGATACCAATCCCTGGACATTATTGAACGGAAGCGTCTTCTTGCACGGAGGAATAATACGACATACTGTTATGATTTTCCATTGGTTTTTGAGACATCATTGCGGCGCATTTGGACATCTGGCCTTCAGAATGGAGATACATGCAATGACAAAGTTAAATTCAAAGCTCGGGAGCTCATATTTTCTGAAAAGCAGGGCACTTGGGAAACTCCACTGGTCACTGCAGAGCGAGCTGTTGCAACAAATGATGTAGGGATGGTAGCTTGGTGCATGGAGATGAGCACTCCTGAGTTCCCTGGTGGACGGACTATTTTAGTGGTGGCAAATGATGTTACACATAATGCAGGTTCTTTTGGTACAAGAGAAGATGCCTTTTTTGCTTCTGTGACAGATCTTGCTTGTCAAAAGAAATTGCCTTTGATTTATTTGGCTGCCAACTCTGGTGCAAGAATTGGAGTGGCAGCAGAAGTCAAAGCTTGCTTTAAAGTTGGATGGTTTGATGAGTTGTCTCCAGACCGTGGGTTTCAATATCTTTATCTCACTCCAGAAGACTACAAGCTCATTGGTCCGTCTGTAATAGCACATGAACTAAAGCTAGAATCTGGCGAAATCAGATGGATTATAGATGACATCATTGGTAAGGAAGATGGACTAGGTGTGGAGAATTTATCAGGCAGTGGAGCAATTGCAGGTGCTTATTCAAGGGCATATCAGGAAACTTTCACATTGACATATGTAACAGGCAGAACAGTTGGTATTGGTGCATACCTTGCGAGATTAGGAATGCGCTGCATTCAGCGCCTTGATCAACCTATAATTCTCACTGGATACTCAGCTCTAAATAAGCTTCTTGGACGGGAAGTGTACAGCTCTCATATGCAATTAGGAGGCCCAAAAATCATGGCAACAAATGGTGTTGTTCATCTCACTGTATCTGATGATTTAGAAGGTGTCTCAGCCATCTTGAAGTGGCTTAGCTATATTCCTCCATATATAGGAGGACCTCTTCCTATTCTGAAGCCTCTAGATCCTCCAGATAGACCAGTTGAATATGCTCCAGAGAATTCATGTGATCCTCGCGCAGCTATTCGTGGTGTAGAAGATAATGGTAGGTGGCTTGGTGGCCTCTTTGACAAAGAGAGCTTCACAGAGACATTAGAAGGGTGGGCAAAAACAGTGGTTACTGGGCGAGCGAAGCTTGGGGGCATCCCTGTGGGAGTTATTGCTGTTGAGACCCAAACAGTGATGCAGGTGATTCCCGCAGACCCTGGTCAACTTGATTCTGCTGAGAGAGTAGTTCCCCAAGCAGGCCAGGTCTGGTTTCCAGATTCAGCATGTAAAACAGCACAATCCTTGCTAGATTTTAACAAGGAAGAGCTTCCTCTGTTTATCTTGGCGAACTGGAGAGGGTTCTCTGGTGGTCAAAGGGATCTTTTTGAAGGAATTCTTCAAGCTGGATCTACCATTGTGGAGAATCTCCGCACATACAAGCAACCTGTGTTTGTTTACATACCAAAAACAGGGGAACTGCGGGGAGGAGCATGGGTGGTAGTTGATAGCAAGATAAATTCGGATGAAGTTGAAATGTATGCAGAAACAACAGCAAAAGGTGGTGTACTAGAACCAGAGGGAATGATTGAAATCAAATTCCGTACGAAAGATCTGCTTGAATGCATGCATAGGCTTGATCCGAATCTCATTTCACTTAAGATTAAGTTACAGGAAGCCAAGGATGATCATCCCGGGGCTGAAGTAATACGACAGCAAATTAAAGCTCGGGAAAAACAGCTGCTTCCTTTTTATAAGCAGATTGCCATCAGATTTGCTGAGTTGCATGACACGTCCTTCAGAATGGCAGCAAAAGGGGTTGTGAAAAAAGTTCTAAAATGGGAAGACTCACGAATCTTTTTCTACAAGAGATTGAACCGAAGATTAACAGAGTCTTCTTTGATTAAGGATGTAAGAGATGCTTCTGGAAACAAACTATCTCATAAATCAGCTTTGCGTTTGATTAAGGATTGGTTTTTGGCTTCAAAGGTTGATTCTGGAGAGGAGTTATGGAAAGATGATGCTGCTTTCTTGGCATGGAAAGATGATCCTAGCAAGTTTGAGTCCTATTTACAAGAATTAAGAGCGCAGAAAGTTTGCAGACAGCTATTGGATATAGGAAATTCTAAGGAAGAGTTGCAAGCATTGCCTGAAGGTCTAGCTGCTCTTCTAAAAAAGGTTCAACCATCAATGAGATCAGAGCTGGTGGAAAAACTTCGAGAAGTTCTTAATTCATGA___GATTGATAATCATGCCAGTAGAGAGTTTGACTACTTTTGGGGTCTTTTATTTTCTTTATTTGTAATTAATAATTATGAATGACCAGGAATTATCTTGGCAGTAGAATATGAATGTGTATTTGTGGAGTGGTCATAATGCTTTTCCATGGGGCTGCCAAGATATACTAGTGTAGTTTGGTTTATTCCCCAATTTGGTTATGATTGCAACATTTGTATTTTCTTGCAAATGGTAAAACATCTCCTGTTGTTTTTCCTACGAATCTAGTTGATGTAGCAGATGGATGTACGATGGAACACACGTTCTCCACTGAGCTGGAAGAGCTTGACCTGATGGCCTTACTGTAAAACATTCAGTTCTCTTCCCATGTAAGGACATAAATGGCAAGGAAATAAATAAGAAATTATATTTCATTC

Fln Alignment:

sp_v1.1_unigene893___LHIYREVQDPNKKEVVYQSPLSVTGPLDGVPVAARYQSLDIIERKRLLARRNNTTYCYDFPLVFETSLRRIWTSGLQNGDTCNDKVKFKARELIFSEKQGTWETPLVTAERAVATNDVGMVAWCMEMSTPEFPGGRTILVVANDVTHNAGSFGTREDAFFASVTDLACQKKLPLIYLAANSGARIGVAAEVKACFKVGWFDELSPDRGFQYLYLTPEDYKLIGPSVIAHELKLESGEIRWIIDDIIGKEDGLGVENLSGSGAIAGAYSRAYQETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGYSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEGVSAILKWLSXXXXXXXXXXXXXXXXXXXXXPVEYAPENSCDPRAAIRGVEDN-GRWLGGLFDKESFTETLEGWAKTVVTGRAKLGGIPVGVIAVETQTVMQVIPADPGQLDSAERVVPQAGQVWFPDSACKTAQSLLDFNKEELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPKTGELRGGAWVVVDSKINSDEVEMYAETTAKGGVLEPEGMIEIKFRTKDLLECMHRLDPNLISLKIKLQEAK--DDHPGAEVIRQQIKAREKQLLPFYKQIAIRFAELHDTSFRMAAKGVVKKVLKWEDSRIFFYKRLNRRLTESSLIKDVRDASGNKLSHKSALRLIKDWFLASKVDSG-EELWKDDAAFLAWKDDPSKFESYLQELRAQKVCRQLLDIGNSKEELQALPEGLAALLKKVQPSMRSELVEKLREVL
Q38970_____________VHIYREVETPGRNSLIYHS-ITKKGPLHETPISDQYKPLGYLDRQRLAARRSNTTYCYDFPLAFGTALELLWASQHPGVKKPYKDTLINVKELVFSKPEGSSGTSLDLVERPPGLNDFGMVAWCLDMSTPEFPMGRKLLVIANDVTFKAGSFGPREDAFFLAVTELACAKKLPLIYLAANSGARLGVAEEVKACFKVGWSDEISPENGFQYIYLSPEDHERIGSSVIAHEVKLSSGETRWVIDTIVGKEDGIGVENLTGSGAIAGAYSKAYNETFTLTFVSGRTVGIGAYLARLGMRCIQRLDQPIILTGFSTLNKLLGREVYSSHMQLGGPKIMGTNGVVHLTVSDDLEGVSAILNWLSYIPAYVGGPLPVLAPLDPPERIVEYVPENSCDPRAAIAGVKDNTGKWLGGIFDKNSFIETLEGWARTVVTGRAKLGGIPVGVVAVETQTVMQIIPADPGQLDSHERVVPQAGQVWFPDSAAKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYRQPVFVYIPMMGELRGGAWVVVDSQINSDYVEMYADETARGNVLEPEGTIEIKFRTKELLECMGRLDQKLISLKAKLQDAKQSEAYANIELLQQQIKAREKQLLPVYIQIATKFAELHDTSMRMAAKGVIKSVVEWSGSRSFFYKKLNRRIAESSLVKNVREASGDNLAYKSSMRLIQDWFCNSDIAKGKEEAWTDDQVFFTWKDNVSNYELKLSELRAQKLLNQLAEIGNS-SDLQALPQGLANLLNKVEPSKREELVAAIRKVL

SNPs (tot: 6)

Position	A %	C %	T %	Probability
2228		16	83	0.994512
2341		25	75	0.996473
2342	25		75	0.996473
2520	83	16		0.994512
2521	83	16		0.994512
2522	83	16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain