SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene892

Length: 1261 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene892

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative rhodanese family protein [Arabidopsis thaliana]	-	-	7.0e-24	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	protein	-	-	0.0	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	74%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Rhodanese-like	IPR001763	-	0.0	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAC9

Fln msg: your sequence is longer than subject: 299 - 120

Fln protein: MEAIITPKVTVPTATLMSRQPKKCRTRGLATKLKLSQMSSFAPSFVPFTTSTTAAKPCRSVVQVPRMEARDLAEQMKVMAAAQKRWEAQIREGKVKALTPKEAGYAIQLSDKILLDVRPSTERNKAWVKGSIWIPVFDVDRRLDPGMISKKISSFIMGNWWSGIPLMAYNNQFIKQAEEKFTKDMDIIVACQKGIRSLAACEQLYNTGYRNLYWVQGGFDAAEEGDFEREGPQPLKFAGIGGFSEFIGWTDQQRSASAKKGWSYRAMYFGRLVGVILLADALFIGVQQLIRKMQEIDL*

Protein Length: 300

Fln nts: CGTCTTGTCTTTGGCTGTCCCTCATATCCCGGATATATCCACATACTTTCATATGATGGGTGAGATAAGAAATTATGCAAACCTGCTGTGTTAGACAATGAATACCTACGGTTATGATAGACATGAGCGGGAGATTCTCGAAATAATCTGAGTTCTTTGCTGGCTCATGTTCTGAGAAAGTAACGCCACCAATATCTCCACAACC_-_ATGGAGGCAATAATCACACCCAAAGTCACGGTGCCCACCGCCACCTTGATGAGTAGACAGCCGAAAAAATGTAGAACAAGAGGTTTGGCCACAAAGTTGAAGTTGTCCCAGATGTCGTCTTTTGCCCCATCGTTTGTACCCTTCACTACCTCAACAACAGCAGCAAAACCATGTAGGAGTGTAGTCCAGGTGCCAAGAATGGAAGCTCGCGATTTGGCAGAGCAGATGAAGGTGATGGCAGCTGCACAAAAAAGATGGGAAGCTCAGATTAGAGAAGGTAAAGTAAAGGCACTAACACCAAAGGAAGCTGGCTATGCAATACAACTTTCAGATAAAATTCTTCTTGATGTTCGTCCATCAACAGAGCGAAACAAGGCTTGGGTGAAAGGCTCCATTTGGATCCCGGTTTTTGATGTTGATAGAAGGCTGGATCCTGGAATGATATCCAAAAAGATTTCCAGTTTCATAATGGGGAATTGGTGGAGCGGGATTCCTTTGATGGCCTACAATAACCAATTTATTAAACAGGCTGAAGAAAAATTTACTAAGGATATGGATATAATTGTAGCATGTCAAAAAGGAATAAGATCCTTAGCAGCTTGTGAACAACTATACAATACTGGTTACAGAAATTTGTATTGGGTTCAGGGAGGCTTTGATGCAGCTGAAGAAGGGGATTTTGAGCGGGAGGGTCCGCAGCCTCTCAAATTTGCTGGTATAGGTGGATTCTCTGAATTTATTGGTTGGACGGATCAACAAAGATCTGCATCTGCAAAGAAGGGGTGGAGCTATCGAGCAATGTATTTTGGCCGTTTGGTGGGAGTAATTTTACTTGCAGATGCCCTATTTATAGGGGTTCAACAACTCATCCGTAAGATGCAAGAAATAGATCTTTAA___TATGAAAATATGGTGGTATGGTGTAGAGAAACATACAGTATATGTATTTTTGAGATTTTGTTTGTTTCAGATCCACTTACAAAGTCAGTGCAATAGATCTGTGTAAATCTACTTTCAGTAATATAGTCCAATATATTTTTATTTTAAAGATGAGTCTTG

Fln Alignment:

sp_v1.1_unigene892___RSLAACEQLYNTGYRNLYWVQGGFDAAEEGDFEREGPQPLKFAGIGGFSEFIGWTDQQRSASAKKGWSYRAMYFGRLVGVILLADALFIGVQQLIRKMQEIDL
D5AAC9_____________RSLAACEQLYNTGYRNLYWVQGGFDAAEEGDFEQDGPQPLKFAGIGGFSEFIGWTDQQRSASAKEGWGYRAMYFGRLVGVILLADALFVGVQQLIHKIQEVNL

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
477	90	10			0.90298
480	90	10			0.90298
482	90			10	0.90298
485	90	10			0.90298
486		10	90		0.90298
487			88	11	0.923564
489	88		11		0.923564
490	88	11			0.923564
491	88			11	0.923564
495	88	11			0.923564
496	88			11	0.923564
497		11	88		0.923564
498	11		88		0.923564
614	50		50		1.0
623	16		16	16	0.988986
893	82	17			1.0
897			82	17	1.0
901		17	82		1.0
902		17	82		1.0
904		82		17	1.0
905		82	17		1.0
908	82			17	1.0
910		82		17	1.0
912	17			82	1.0
922			56	37	1.0
1167	25		75		0.996473
1195			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain