SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene883

Length: 1120 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene883

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	zinc finger (C3HC4-type RING finger) family protein	-	-	3.0e-13	27%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	protein	-	-	0.0	53%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	53%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	53%
Blast2go	Zinc finger, C3HC4 RING-type	IPR018957	-	53%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PT72

Fln msg:

Fln protein: MAGQLPGVHECARRRRCNQRGSFDNFQLWGANRRSRRSSFYPYQDLSTRQASEYFQHPQVHSTTRSTEQMRAEQHQPGESGDLKGVAREARERLDEKLRATSLSNNKRRKSFWYRITQQLDTLINIYDPKHHGTNCLEEVWPSRIRYWLTSDASVTEVARRSAEPHATQHAHSSSTALNEASINLLERQMFMPKNKNIGGKYSWKKLMSTSTQEDCPVCLEPFQTNQVLIHLPCTHRFHSSCLVPWLNRHCHCPCCRTKISIKAP*

Protein Length: 267

Fln nts: ATGGGGATTGAGAGGCGTGGCACAGAGTTTTTACAATACAGTGTAGAGCGCATTATGCTCCTATTCAAACTGAAGCACCCCTTATTAGCAATGGCGACAATTCTCTTCATCAGGGTTCGCAGGCTTTAACAGACAGATCGTCAGGATCCAGATAGTTCAGCT_-_ATGGCGGGCCAGCTTCCAGGAGTTCATGAATGTGCACGCAGACGAAGGTGTAATCAAAGGGGTTCGTTCGATAACTTTCAGCTTTGGGGTGCAAATCGGAGGAGCAGGCGTTCTTCTTTCTATCCATACCAAGATCTTTCCACACGCCAGGCCTCTGAATATTTTCAGCACCCTCAGGTTCACTCAACGACAAGATCGACAGAGCAAATGAGAGCAGAGCAGCATCAACCAGGAGAAAGTGGTGACCTCAAGGGAGTTGCACGTGAAGCACGAGAGCGTCTAGACGAGAAGTTAAGGGCAACCTCATTATCAAATAACAAAAGGCGTAAGAGTTTTTGGTACAGAATTACACAACAGCTGGACACACTAATCAATATTTATGATCCAAAGCATCATGGTACCAACTGTTTAGAAGAAGTTTGGCCATCCAGAATCAGGTATTGGTTAACTTCAGACGCTTCAGTCACAGAAGTAGCAAGGAGATCTGCAGAGCCTCATGCTACCCAGCATGCCCATTCCTCCTCTACTGCTCTGAATGAAGCCTCCATCAATTTGCTTGAAAGACAAATGTTCATGCCCAAGAACAAGAATATCGGTGGGAAATACAGTTGGAAAAAATTGATGAGTACCTCCACGCAAGAAGACTGCCCAGTATGCCTTGAGCCCTTCCAGACTAATCAAGTACTCATACATCTTCCTTGTACACATAGATTTCATTCCAGCTGTCTGGTTCCATGGTTGAATAGGCATTGTCACTGCCCATGTTGCAGGACCAAAATATCAATCAAGGCACCATGA___ACTACATAAGCTTTTTCTTTTTCCTTCAGTTGCCCATCTGCCTCACTTTTGTCTGATCTTTAGAATCGAAGTTGCCCCTGGAATGCACATCTGCTGTGTAAATATTAGCTCGGATTGTATGAGTTTTAATACTAAATTAATAAGTTAATCTTAAATTTCC

Fln Alignment:

sp_v1.1_unigene883___MAGQLPGVHECARRRRCNQRGSFDNFQLWGANRRSRRSSFYPYQDLSTRQASEYFQHPQVHSTTRSTEQMRAEQHQPGESGDLKGVAREARERLDEKLRATSLSNNKRRKSFWYRITQQLDTLINIYDPKHHGTNCLEEVWPSRIRYWLTSDASVTEVARRSAEPHATQHAHSSSTALNEASINLLERQMFMPKNKNIGGKYSWKKLMSTSTQEDCPVCLEPFQTNQVLIHLPCTHRFHSSCLVPWLNRHCHCPCCRTKISIK
C0PT72_____________MAGQLPGVHECARRRRCHPRVSFDNLQLWGADRRSRRSSFYLYQDLSTRPASEYFQNPQAHSTTRSTEQTRAEKHQPGESGDLKGVAREARERLDEKLRAASLSNNKRRNSFWCRITQQVVTLINIYDPKHHGSNCLEEVWPSRIRDWLASDTSVTEVARRYAELHVTQNAHSSSTGLSKASIDLLERQTFTPKHKNICGKYSWKKLISTSTQEECPVCLESFQTSQVLIHLPCTHIFHSGCLVPWLNRHCHCPCCRTRISIK

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
596	83		16		0.994512
745	85		14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain