SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene879

Length: 1993 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene879
CGTCGTGACCTTGGCTGTCACGCAATCTCTACCGCATGTGATCTGGCGTTGCTATAGTTTGCAATTCCTCGCCTTTGATTTTGCGAAAAGCTCTAGTTTAAACTGAGAGATCCTTTGTGAAAAGTGCAGTCTTTCAGTGCCCTTGAATGCCCAAGTCATGGATCGTGTAAAACGGTGTAGTTTTGTACTATATATGTTATTAATCATCGGCATTGCAGAATCCACAGCGAAGCCATTGCAGATTAAGCATGGGGGTATACAGAATATATCGACACAGGTCTCTGCAATAAGCTCAAATTCTGTTCTGGTTGCATTGCTGGATTCACATTACACTGAACTTGCAGAGCTGGTGGAGAAGGCCCTGTTGCTGCAGCCATTGGAAGAGGTGGTGGGAAGCAGCAACATTACAATTTTTGCTCCCAACAATGTATTCTTGGAGAAGAATTTGGATCCGGAGTTCAAGCGGTTCCTGCATGAACCCGGGAACCTGAGGTCTCTGCAGCGTTTGCTTCAGTACCATGTGGTGCCGAGGAGGATTGTGGCGGAGGAATGGAGGAATGAGACCCATCAGTCTTTGAACAGAGATGGGCTTAAGTTTGAGGTGAACGGGGATGACAGAAAAGTAGATCTGGGGGCTGTGATTCATCCCAATGCTGTGGTGAAGCCAGATGGAGTCATTCATGGCATTGACAGAGTCCTTGTGCCCAAGTCAGTGCAGGATGATTTCAATGCGTGGAGGACTGGGGTTGTGTTGGCTGTGAAGCCTGAGGGGGCACCTGTCGTTGATGGCCCATATCAGAAAAAGTCAGTTTCAGGCGCAGGAGTCAAGCTTTATTCTAGTCCTCCTACTCCACCGCATTCAATATACTATGCCTTGGCCCCGGGGCCTTCGTTGGCACCTGCACCTGCACCAGGTCCTTCTTCTGGGCACCATTGGTTTGATGGGGAGAGCCAGGTCAAGGACTTCATTCACACATTGATGCTTTATGGTGGCTACAATGAGATGGCTGATATCTTGGTGAACTTGACCTCCTTGGCGTCTGAGATGGCCAAGCTCGTTTCAGAGGGTTACCGCATCACTGTCCTGGCGCCCAATGATGAGGCTATGGGGGAACTCACAACAGATCAGCTGAGTGAACCGCATGCTCCGGAGAAGATCGTATATTATCACATTATCCCAGAGTATCAGACTGAGGAAAGCTTGTACACTGCTGTGAGGAGGTTCGGGAAGGTCAAGTATGATACTCTTAGGATCCCTCATAAGATGGTCACTCAGGAAGCAGATGGGACTGTTATGTTTGGTCACGGACAGACAACTGCCCACCTGTATGATCATGATATTTACGTTGATGGGAGAATATCTGTTCAGGGCATCGATAAGGTCTTGTTCCCACCAGAAGAAGCGGCAAACCACCATGTTAAGGGAAGAAAGCTGGAAGAAGAGCAGGAGGAGGTTGAGGAAACCAAGAAGCCGAGTAAAGGGCGGTTACTTGGAATGTTGTGTAACCTGGTAGATAGGTTTGGTCAAAATTCCCTTCTTTCGGGCTGCCAGTAATGACATCTGATGTGAAAAGAGTTTCGTTGAGGGTGGAAAAGGAGCTTTTTGAGCTGAAATGCCTCGGTAAAATCACCAATGTTGTAATCAAGGGTTATATGCATCATTCTTGTGTCTTTTGTCTACCATACTCTAGATAAGATATGTTGTAGGATTTGGTGTAATAGTAGGGTGTATTACTAGTAAATGAATTGAAGGTTCAACTAGGATCAGATTTCCCTTGCACATAAGAAGGCCATCAAGTATATTGAGATGATTAGCTTTGATATAATTCATTTGTATATTAATTGTGAGAATGATTACATAAAACAGGACACTCCTGTCTTGAGGAGGACTGAGATTCCTCTCTTCATAAGTGTGCTCAAGACCAGTTTTGAGTGCCATAATAAAAATGATTCTTTCTATGTTAATGTCTAATTATTTTCAATGATCCAAAGA

Ace file of the UniGene sp_v1.1_unigene879

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Fasciclin-like arabinogalactan protein 16 n=1 Tax=Gossypium hirsutum RepID=A9XTM1_GOSHI	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	71%
Blast2go	fasciclin-like domain-containing protein	-	-	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXQ4

Fln msg:

Fln protein: MDRVKRCSFVLYMLLIIGIAESTAKPLQIKHGGIQNISTQVSAISSNSVLVALLDSHYTELAELVEKALLLQPLEEVVGSSNITIFAPNNVFLEKNLDPEFKRFLHEPGNLRSLQRLLQYHVVPRRIVAEEWRNETHQSLNRDGLKFEVNGDDRKVDLGAVIHPNAVVKPDGVIHGIDRVLVPKSVQDDFNAWRTGVVLAVKPEGAPVVDGPYQKKSVSGAGVKLYSSPPTPPHSIYYALAPGPSLAPAPAPGPSSGHHWFDGESQVKDFIHTLMLYGGYNEMADILVNLTSLASEMAKLVSEGYRITVLAPNDEAMGELTTDQLSEPHAPEKIVYYHIIPEYQTEESLYTAVRRFGKVKYDTLRIPHKMVTQEADGTVMFGHGQTTAHLYDHDIYVDGRISVQGIDKVLFPPEEAANHHVKGRKLEEEQEEVEETKKPSKGRLLGMLCNLVDRFGQNSLLSGCQ*

Protein Length: 467

Fln nts: CGTCGTGACCTTGGCTGTCACGCAATCTCTACCGCATGTGATCTGGCGTTGCTATAGTTTGCAATTCCTCGCCTTTGATTTTGCGAAAAGCTCTAGTTTAAACTGAGAGATCCTTTGTGAAAAGTGCAGTCTTTCAGTGCCCTTGAATGCCCAAGTC_-_ATGGATCGTGTAAAACGGTGTAGTTTTGTACTATATATGTTATTAATCATCGGCATTGCAGAATCCACAGCGAAGCCATTGCAGATTAAGCATGGGGGTATACAGAATATATCGACACAGGTCTCTGCAATAAGCTCAAATTCTGTTCTGGTTGCATTGCTGGATTCACATTACACTGAACTTGCAGAGCTGGTGGAGAAGGCCCTGTTGCTGCAGCCATTGGAAGAGGTGGTGGGAAGCAGCAACATTACAATTTTTGCTCCCAACAATGTATTCTTGGAGAAGAATTTGGATCCGGAGTTCAAGCGGTTCCTGCATGAACCCGGGAACCTGAGGTCTCTGCAGCGTTTGCTTCAGTACCATGTGGTGCCGAGGAGGATTGTGGCGGAGGAATGGAGGAATGAGACCCATCAGTCTTTGAACAGAGATGGGCTTAAGTTTGAGGTGAACGGGGATGACAGAAAAGTAGATCTGGGGGCTGTGATTCATCCCAATGCTGTGGTGAAGCCAGATGGAGTCATTCATGGCATTGACAGAGTCCTTGTGCCCAAGTCAGTGCAGGATGATTTCAATGCGTGGAGGACTGGGGTTGTGTTGGCTGTGAAGCCTGAGGGGGCACCTGTCGTTGATGGCCCATATCAGAAAAAGTCAGTTTCAGGCGCAGGAGTCAAGCTTTATTCTAGTCCTCCTACTCCACCGCATTCAATATACTATGCCTTGGCCCCGGGGCCTTCGTTGGCACCTGCACCTGCACCAGGTCCTTCTTCTGGGCACCATTGGTTTGATGGGGAGAGCCAGGTCAAGGACTTCATTCACACATTGATGCTTTATGGTGGCTACAATGAGATGGCTGATATCTTGGTGAACTTGACCTCCTTGGCGTCTGAGATGGCCAAGCTCGTTTCAGAGGGTTACCGCATCACTGTCCTGGCGCCCAATGATGAGGCTATGGGGGAACTCACAACAGATCAGCTGAGTGAACCGCATGCTCCGGAGAAGATCGTATATTATCACATTATCCCAGAGTATCAGACTGAGGAAAGCTTGTACACTGCTGTGAGGAGGTTCGGGAAGGTCAAGTATGATACTCTTAGGATCCCTCATAAGATGGTCACTCAGGAAGCAGATGGGACTGTTATGTTTGGTCACGGACAGACAACTGCCCACCTGTATGATCATGATATTTACGTTGATGGGAGAATATCTGTTCAGGGCATCGATAAGGTCTTGTTCCCACCAGAAGAAGCGGCAAACCACCATGTTAAGGGAAGAAAGCTGGAAGAAGAGCAGGAGGAGGTTGAGGAAACCAAGAAGCCGAGTAAAGGGCGGTTACTTGGAATGTTGTGTAACCTGGTAGATAGGTTTGGTCAAAATTCCCTTCTTTCGGGCTGCCAGTAA___TGACATCTGATGTGAAAAGAGTTTCGTTGAGGGTGGAAAAGGAGCTTTTTGAGCTGAAATGCCTCGGTAAAATCACCAATGTTGTAATCAAGGGTTATATGCATCATTCTTGTGTCTTTTGTCTACCATACTCTAGATAAGATATGTTGTAGGATTTGGTGTAATAGTAGGGTGTATTACTAGTAAATGAATTGAAGGTTCAACTAGGATCAGATTTCCCTTGCACATAAGAAGGCCATCAAGTATATTGAGATGATTAGCTTTGATATAATTCATTTGTATATTAATTGTGAGAATGATTACATAAAACAGGACACTCCTGTCTTGAGGAGGACTGAGATTCCTCTCTTCATAAGTGTGCTCAAGACCAGTTTTGAGTGCCATAATAAAAATGATTCTTTCTATGTTAATGTCTAATTATTTTCAATGATCCAAAGA

Fln Alignment:

sp_v1.1_unigene879___MDRVKRCSFVLYMLLIIGIAESTAKPLQIKHGGIQNISTQVSAISSNSVLVALLDSHYTXXXXXXXXXXXXQPLEEVVGSSNITIFAPNNVFLEKNLDPEFKRFLHEPGNLRSLQRLLQYHVVPRRIVAEEWRNETHQSLNRDGLKFEVNGDDRKVDLGAVIHPNAVVKPDGVIHGIDRVLVPKSVQDDFNAWRTGVVLAVKPEGAPVVDGPYQKKSVSGAGVKLYSSPPTPPHSIYYXXXXXXXXXXXXXXXXXXXHHWFDGESQVKDFIHTLMLYGGYNEMADILVNLTSLASEMAKLVSEGYRITVLAPNDEAMGELTTDQLSEPHAPEKIVYYHIIPEYQTEESLYTAVRRFGKVKYDTLRIPHKMVTQEADGTVMFGHGQTTAHLYDHDIYVDGRISVQGIDKVLFPPE-----EAANHHVKGRKLXXXXXXXXXTK-KPSKGRLL
A9NXQ4_____________MDYQSPRSIIVAILLALFIAASNAAALQ-KAGLPSNSSSSQVAINSNSVLVALLDSHYTELAELVEKALLLQTLEEVVGSSNVTIFAPQNDILERKLDPEFKRFLHEPGNLKALQKLLMFHVVPRRIVAEDWRNGTHQTLAKDRLKLSMKGDKKTIDLASVAHPNAVVRPDGVIHGIDRMLIPKSVQDDFSKWRSGVSLAVMPQGAPVLD-PIKKLSKSVAASSLSAKSP-PIHSIYYALAPGPSLAPAPAPGPSTGHYWFDGESQVKDFINTLVLYGGYNEMADILVNLTSLASELAKLVSEGYKVTVLAPNDEAMGELTTEQLSEPGAQEHIMYYHIIPEYQTEESMYNAVRRFGKMKYDTLRIPHKITSQEADGTVLFGEGEQSAHLFDHDIYVDGRISVQGIDKVLFPPQPKDVKTVKTVKTKGRKLREEEEEEAVNESQPTRGRLL

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
708	87		12		0.992554
818			50	50	1.0
1036	16		83		0.997339
1075	14	85			0.994053
1479	90		9		0.999872
1480	90		9		0.999872
1967			11	88	0.923564
1968			55	11	1.0
1973	60	40			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain