SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene868

Length: 1016 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene868

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RZV5_RICCO	-	-	1.0e-06	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Blast2go	unknown [Picea sitchensis]	-	-	0.0	86%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQA9

Fln msg: Separated hits, possible frame ERROR between 118 and 121, and possible frame ERROR between 732 and 741, your sequence is shorter than subject: 284 - 359

Fln protein: EVDVYDQDGWWKGVVDGILPQNKYVIYFGQTLEKLQYAxxQLRLHQDWIDGKWVSSSENVGIKEPNPKCSLLSV*NVENMASKSVKRSNKTNENQNEVEVSEFSGECKADIQCETWNDGSSQLTKKSSKRTKKSSKRKQGTKDQSNNGSACRRKILIEENMDGNETQDENLHNIPVKVAKIASLKDLSSPTESENTITISIPYLEIVDQKICHPGNTSEIRGKATLKQMYLLAYHFVLKALYLxxxxHNWKLETLLTDLREVLHISNEEHANELRCIMSGQYN*

Protein Length: 285

Fln nts: AGAAGTGGATGTATATGATCAAGATGGTTGGTGGAAGGGAGTTGTTGATGGCATTCTGCCTCAAAATAAATATGTTATTTACTTCGGCCAGACTTTGGAGAAATTGCAGTATGCTATxxxACAGCTCCGGCTTCATCAGGATTGGATAGACGGCAAGTGGGTTAGCAGTTCAGAGAATGTGGGAATAAAAGAACCAAATCCAAAGTGCTCACTGCTTTCTGTCTGAAATGTGGAGAATATGGCTTCAAAATCAGTGAAAAGATCTAATAAAACCAATGAAAATCAAAATGAAGTTGAGGTTTCCGAATTCTCAGGAGAATGTAAAGCAGACATACAGTGTGAGACCTGGAATGATGGAAGTAGTCAGCTAACCAAAAAATCTTCCAAGAGAACCAAAAAATCTTCCAAGAGAAAGCAGGGAACTAAGGATCAGTCCAATAATGGTTCAGCCTGCAGAAGGAAAATCCTGATTGAAGAAAATATGGATGGTAATGAGACACAAGATGAAAATCTTCATAACATTCCTGTTAAGGTTGCTAAAATAGCCTCACTCAAAGATCTCAGTTCCCCTACTGAATCTGAGAACACAATTACAATCTCTATTCCTTATCTGGAAATTGTTGACCAAAAAATATGTCATCCGGGTAATACCTCTGAAATACGTGGAAAAGCAACTTTAAAACAGATGTACCTCCTAGCTTATCATTTTGTACTCAAGGCACTCTATCTTCxxxxxxxxxCTCATAATTGGAAACTTGAAACTCTCCTCACAGATCTTCGAGAAGTGCTCCACATTAGTAATGAGGAGCACGCTAATGAGCTGAGATGCATAATGTCTGGTCAATACAACTAAGAGTTGCTTGTGATATCTAGGCAATATAACTGAGACTTGACTAGTAATCTTTGTTTTGTATTAATAACTTTAGCACACAGTCTGTGCCAAAGTTGCAGAGGCTGACTACTGACTGACTGTTGGGATGATAACTCAAGGAATTAATCCATGTTTATGAAATATAAC

Fln Alignment:

sp_v1.1_unigene868___EVDVYDQDGWWKGVVDGILPQNKYVIYFGQTLEKLQYAIxQLRLHQDWIDGKWVSSSENVGIKEPNPKCSLLSV*NVENMASKSVKRSNKTNENQNEVEVSEFSGECKADIQCETWNDGXXXXXXXXXXXXXXXXXXXXGTKDQSNNGSACRRKILIEENMDGNETQD-ENLHNIPVKVAKIASLKDLSSPTESENTITISIPYLEIVDQKICHPGNTSEIRGKATLKQMYLLAYHFVLKALYLQxxxHNWKLETLLTDLREVLHISNEEHANELRCIMSGQY
B8LQA9_____________EVDVYDQDGWWRGFVDGILPQNKYVVYFKQTLEKLEYDIxQLRLHQDWIDGKWVKNSENMGIKEPNPKCPLLSAGDVENIPSKSVKRSNKTNEKRSEVKVSESSGECKADRQCETLKDG-------CSQPTKKSSKRKQGTKDQSNNGSACRRKILSEENVDGTETHDEENIPNFHVKVVKRAPLKDLSSPTESENTFTISIPYLEIVDQNICHPGNTSEIHGKVTLKQMYLLAYHFVLKALYLQxxxHNWKLETLLTDLREVLHINNEEHANELRCITSGQY

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
492	83	16			0.994512
503	16		83		0.994512
544	85	14			0.993533
547		85	14		0.993533
549		85	14		0.993533
554	85			14	0.993533
555	85			14	0.993533
556	85		14		0.993533
558	85	14			0.993533
560		85	14		0.993533
564		14	85		0.993533
566	14			85	0.993533
708	16			83	0.994512
711	16			83	0.994512
712	83		16		0.994512
713		83		16	0.994512
716	80	20			0.995493
717	80	20			0.995493
718			80	20	0.995493
720	20	80			0.995493
722	20	80			0.995493
724	20	80			0.995493
725			20	80	0.995493
727			20	80	0.995493
745	66			33	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain