SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene857

Length: 981 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene857

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	F14J9.26 protein n=2 Tax=Arabidopsis thaliana RepID=O80540_ARATH	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).	-	-	50%
Blast2go	protein	-	-	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7KJS1

Fln msg:

Fln protein: MGSRANQMLKLRIVIIGLFVIFVLLLSVSISTYSKRKISGREFESQPQLEDLCAETPPTCEKLPRVVAQALLHYAANNVTPQQTAAEIKITAGVLGRLSPCNMLVFGLGYDSLLWATLNHGGRTIFLEEDEEWIAKMREKHPVLESHFVEYPADTMVTDAYDLLKYAMSEPECGPQGREELEFSRCKLALRNLPAEIYSREWDAIMIDAPRGYFPEAPGRMHAIYTSAVLAFSSTRPTQVFVHDVNRTVEDMYSNTFLCRHNLVAAQGSLWHFTIPPKPTSFTTFCSV*

Protein Length: 290

Fln nts: ATGGGGGCAGCTGCAAATAAGAAAGAAC_-_ATGGGATCAAGAGCCAACCAGATGCTGAAGCTCAGAATTGTCATTATAGGTCTCTTTGTAATTTTCGTCCTGCTGCTGTCTGTAAGCATCAGTACTTATTCCAAGAGAAAAATCAGTGGTCGCGAGTTCGAATCCCAGCCCCAATTGGAGGACCTGTGCGCCGAAACCCCTCCTACCTGCGAAAAGCTTCCCAGGGTAGTGGCCCAAGCCCTGCTCCACTATGCCGCCAACAACGTGACTCCGCAGCAGACTGCGGCGGAAATAAAGATAACAGCGGGAGTGCTGGGAAGGCTGAGCCCCTGCAACATGCTGGTTTTCGGGCTGGGCTACGACAGCCTCCTGTGGGCGACCCTCAACCATGGCGGGCGAACAATTTTTCTGGAAGAAGATGAGGAATGGATAGCCAAGATGCGAGAAAAGCACCCGGTACTGGAATCACACTTTGTGGAATACCCGGCGGATACCATGGTCACCGATGCGTACGATCTGTTGAAATACGCGATGTCGGAACCGGAATGCGGGCCCCAGGGAAGGGAGGAGCTGGAGTTTTCGAGGTGTAAGCTGGCGTTACGGAATCTTCCGGCGGAGATTTACAGTCGGGAGTGGGACGCCATCATGATCGACGCACCCAGAGGTTACTTCCCGGAGGCGCCCGGGCGGATGCACGCCATTTACACCTCGGCTGTTCTTGCATTCAGCTCTACCAGGCCCACCCAGGTCTTTGTCCACGACGTGAATCGAACCGTGGAGGATATGTACTCGAACACATTTCTCTGCAGACACAACCTGGTGGCTGCTCAAGGAAGCTTGTGGCATTTCACCATCCCTCCTAAACCCACCTCCTTCACCACATTTTGCTCCGTTTGA___CATTTGCTCCAGAGTTTCCATGTGGTGTTATGTATAAAATTTTGTCTCTCAACAATAATGGCCTTATCAAATCAATGTTTCATCAT

Fln Alignment:

sp_v1.1_unigene857___ESQPQLEDLCAETPPTCEKLPRVVAQALLHYAANNVTPQQTAAEIKITAGVLGRLSPCNMLVFGLGYDSLLWATLNHGGRTIFLEEDEEWIAKMREKHPVLESHFVEYPADTMVTDAYDLLKYAMSEPECGPQGREELEFSRCKLALRNLPAEIYSREWDAIMIDAPRGYFPEAPGRMHAIYTSAVLAFSSTR--PTQVFVHDVNRTVEDMYSNTFLCRHNLVAAQGSLWHFTIP
D7KJS1_____________EQQTPEETRTARCSGACNKLPRSLAQALIHYSTSVITPQQTLKEIAVSSTVLGKKSPCNFLVFGLGHDSLMWSSLNYGGRTVFLEEDEAWIKQIKRRFPMLESYHVTY--DSKVNQADNLIEVGKG-PECTAIG--DPRYSMCQLALKGLPAEIYETSWDLIMVDAPTGYYDEAPGRMTAIYTAGMMARNRKQGGETDVFVHDVNREIENKFSKTFLCEGYMTKQEGRLRHFVIP

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
253		90	10		0.90298
263		70		30	1.0
312		88		11	0.923564
404		33		66	1.0
484	12	87			0.992554
485	37		50	12	1.0
486			87	12	0.992554
487		87	12		0.992554
556	88		11		0.923564
591	11	88			0.923564
595		88	11		0.923564
865		90		9	0.90298
893		10		90	0.991528
907	90		10		0.991528

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain