SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene854

Length: 1252 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene854

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	EDS5 n=1 Tax=Glycine max RepID=D6BM32_SOYBN	-	-	2.0e-10	52%
FL-Next	sp=Enhanced disease susceptibility 5; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	58%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Multi antimicrobial extrusion protein	IPR002528	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q945F0

Fln msg: Distance to subject end: 403 aas, your sequence is shorter than subject: 270 - 543

Fln protein: MERCINRCLLQSQSIVSGSYGVFQPITSAWVYSCTLPSDVPDPSLKQNQLRFCSASTAPFRHKHLHKKSNGGTCATAGQVARCTPEAQQIVEAENSCCEFVPSNCSDEIELEIMKSLEGTEEVLKVSSSKQFRDERKGPSKMDSGPSVDTSQNGVERQISTEIYPSRSANGLQPMESRREESIENNADLEKLSNESLLEEMTVEEQPTTSRLGSTREDGELQSKGIWQQMKDIVGFAGPALGIWLSPHIMSLINTAVIGNCSSLELAALG

Protein Length: 271

Fln nts: CGTCGTGACCTTGGCTGTCAGTGTGTTAGTTAACACACAGGCTGTGTGGGAGAGCTTATGATACTCGTGAACTTCACTGAGAATAGATGTTGATGTTAGAATGTGCCAAATGCGCCATGTTGTTTGATCTTTGGCCATAGAAACTGGGTGTTAGGTAACACACAGACTGTGTGGGAGAGCTTATGATCCTGTGAACTCACTGAGAACAGCATTGCATTCGACTGTGGAAATCTATTATTGTTTCTGTTGATTTCCATATTGAGAACAGTTTTAAACTGTTTTATAGTTCTCATCTGGGGGCGTGGCTCGGAATTCAGAAGCTTTTTTGAAACGGGCTGTTCCTAACTATACCTATGTGTTTTTGGGTCTTGGAAATCCGCATTAAAATTTAAACTCTTCCTGAGGATTTCCAAGGTTCACAGTTACGAACACTAAGAATT_-_ATGGAGCGTTGCATTAATCGATGCCTTTTACAGAGCCAATCTATAGTCTCTGGGTCGTATGGAGTTTTCCAGCCAATTACGTCGGCCTGGGTTTACTCATGTACTCTCCCGTCAGATGTTCCCGACCCCAGTTTAAAGCAAAATCAGTTGAGATTTTGTTCTGCATCGACTGCGCCTTTCAGACACAAACATTTGCACAAAAAATCAAATGGTGGCACCTGCGCTACCGCTGGTCAAGTCGCTAGATGTACTCCAGAGGCCCAACAAATTGTTGAAGCTGAAAATTCATGTTGCGAATTTGTTCCTTCGAATTGCAGCGATGAGATTGAGCTAGAAATTATGAAATCCTTGGAAGGCACAGAGGAAGTTTTAAAAGTATCATCGAGCAAACAGTTTAGAGATGAACGAAAAGGTCCGAGTAAGATGGATTCTGGACCTTCAGTTGATACAAGCCAAAATGGCGTGGAGAGGCAGATTAGCACGGAGATATACCCTTCCAGATCTGCAAACGGTCTGCAACCAATGGAGTCTCGAAGAGAAGAATCAATCGAGAACAATGCAGATCTCGAGAAATTATCAAATGAATCTCTCTTGGAAGAGATGACTGTGGAGGAACAACCTACTACTAGTAGGCTTGGTTCTACGAGAGAGGATGGGGAACTTCAATCTAAGGGTATTTGGCAGCAGATGAAAGATATTGTAGGGTTTGCAGGACCAGCGCTTGGGATTTGGTTATCTCCACATATCATGAGTCTCATTAACACAGCCGTTATAGGCAATTGCAGCTCTTTGGAACTTGCTGCTCTTGGACC

Fln Alignment:

sp_v1.1_unigene854___REDGELQSKGIWQQMKDIVGFAGPALGIWLSPHIMSLINTAVIGNCSSLELAALG
Q945F0_____________KERGDLVKQSIWEQMKEIVKFTGPAMGMWICGPLMSLIDTVVIGQGSSIELAALG

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
908	33		66		0.997452
958		33		66	1.0
1041		10		90	0.90298
1077			90	10	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain