SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene842

Length: 1436 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene842

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	mo-molybdopterin cofactor sulfurase	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	molybdenum cofactor sulfurase family protein	-	-	76%

Source	InterPros	Term	Type	Identity
Blast2go	Molybdenum cofactor sulfurase, C-terminal	IPR005302	-	76%
Blast2go	MOSC, N-terminal beta barrel	IPR005303	-	76%
Blast2go	Pyruvate kinase-like, insert domain	IPR011037	-	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NM27

Fln msg:

Fln protein: MERIGSLISSVFGNEEAQNPAAKVKAIYIYPIKACRGISVPQACICPTGFRWDRQWLVVNSKGRACTQRVEPKLALVEVSLPMEAFSEEWEPTADSFLTVKAPGMDPLKIPLLQKNREKVENVSIWEWSGPALDEGTDAADWFSRYFGKPCRLVRFDTASEVRPTPAEYARGFKTMFSDEYPFLVISQESLDTLNKQLKEPLPINRFRTNIFVENCEPFAEDLWKTLRINGLTFHGVKLCARCKVPTVNQETGIAGAEPTETLSKFRSGNILFSGKKKRGEVFFGQNLVCEESLKPKAGKEKTISVGDSIYVLKMASSSGEAAA*

Protein Length: 326

Fln nts: CAATGGAATAATTATTGAGCAAATCATTACAATCGACCTGAAGCCCGGGTCGTGATCAAAGTACATTAGCCTGGGTAATCATCAAAGTACGTTAGCGTCAAGCCTAATTCCTCGAATTCCCGTCAAAGAGTTAGAATTCAGAGTGTAGCGAGCTGATATTTATCCATTGCAAGGGGAACTAGACGAAACCAAAATAAGCTGAAGGCAGTGCAGGCGTAATT_-_ATGGAGAGAATCGGGTCATTGATCAGTTCTGTTTTCGGTAACGAGGAAGCTCAGAATCCTGCTGCTAAGGTCAAAGCAATTTACATATATCCTATCAAGGCTTGCCGAGGCATTTCTGTGCCTCAGGCCTGCATTTGCCCCACCGGGTTCAGATGGGATAGACAATGGCTAGTTGTAAATTCAAAGGGTCGGGCATGCACACAAAGAGTGGAACCAAAGCTTGCTTTAGTGGAAGTATCTCTACCAATGGAGGCATTTAGTGAGGAATGGGAACCTACAGCTGATTCATTTCTAACTGTGAAAGCACCAGGGATGGACCCTTTAAAAATTCCTCTACTACAGAAAAATCGTGAAAAGGTAGAGAATGTTTCAATATGGGAATGGTCTGGCCCAGCACTTGATGAGGGTACTGATGCAGCTGACTGGTTTTCGAGGTATTTTGGCAAACCTTGTCGGTTGGTACGGTTTGATACAGCATCAGAGGTCAGGCCAACACCTGCTGAATATGCTCGTGGTTTTAAGACTATGTTTTCTGACGAGTACCCTTTTCTTGTGATCTCTCAGGAGTCATTGGATACTTTGAACAAGCAACTGAAGGAACCTCTTCCAATCAACCGCTTTAGGACCAATATCTTCGTAGAGAATTGTGAACCCTTTGCTGAAGATTTGTGGAAAACTTTGAGAATTAATGGATTGACATTCCATGGTGTGAAGCTTTGTGCGCGGTGCAAGGTGCCTACTGTGAATCAAGAAACAGGAATTGCAGGAGCTGAACCGACTGAAACCTTGTCAAAATTTAGATCTGGCAATATCTTATTCTCAGGAAAGAAAAAACGTGGAGAGGTTTTCTTTGGACAGAATTTGGTTTGTGAGGAATCATTGAAGCCTAAAGCTGGAAAAGAAAAAACCATCAGTGTGGGCGATTCAATATATGTTCTCAAGATGGCTAGCTCATCGGGAGAAGCAGCTGCATGA___TAGAGTTAAAACACTGCACTTTTATAAGAATAAGAATAACATGTTAGTTTTTACAAGTAGTTACCATAGTCCGAAAAAATTGTTTTATAAGAATAACATGTTATTTGTTTTAGGTAGTTACCATAGTCTGAAAAACTTATAAAATGGTTTAAGGGGACGTACGTGCAAAAACTTCCATCCTTTTATACGGATGCTACCACAATCATTTGATTTTGTCATAATTTGGTTTCTTACGTACCT

Fln Alignment:

sp_v1.1_unigene842___MERIGSLISSVFGNEEAQNPAAKVKAIYIYPIKACRGISVPQACICPTGFRWDRQWLVVNSKGRACTQRVEPKLALVEVSLPMEAFSEEWEPTADSFLTVKAPGMDPLKIPLLQKNREKVENVSIWEWSGPALDEGTDAADWFSRYFGKPCRLVRFDTASEVRPTPAEYARGFKTMFSDEYPFLVISQESLDTLNKQLKEPLPINRFRTNIFVENCEPFAEDLWKTLRINGLTFHGVKLCARCKVPTVNQETGIAGAEPTETLSKFRSGNILFSGKKKRGEVFFGQNLVCEESLKPKAGKEKTISVGDSIYVLKM
A9NM27_____________MERIGSLISSVFGNAEAEKPAAKVKAIYIYPIKACRGISLPQVCVCPTGFRWDRQWLVVNSKCRAYTQRPEPKLALVEVSLPMEAFSEEWEPTADSFLTVKAPGMDPLKVPLLQQNREKVENVSMWEWSGSALDEGADAADWFSRYLGKPCWLVRFDTASEVRPTPAEYARGFKTMFSDEYPFLVISQESLDTLNKQLKEPLPINRFRTNIFVENCEPFAEDLWKTLRINGLTFHGVKLCARCKVPTVNQETGIPGNEPAETLSKFRSGDILFSGKKKRGEVFFGQNLICEESLNPKVCKAKTINVGDSVYVLKM

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
351		80		20	0.995493
551	66		33		0.997452
1031	10		90		0.90298
1252		11		88	0.923564
1270		85		14	0.993533
1360		53		46	1.0
1402		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain