SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene839

Length: 2129 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene839
CGTCGTGACCTTGGCTGTCACTCAGTTAGGAGTGGGTTATTGGGTGTTTTAAGTTTCTGCCCAGCTGCTACCACGGGCCACTTCGTAGGCCTTGATTTTTTTTTGTGTATTGGAGCACAGGTGGAGTGTGGTCTTACATGAGTGAAGGGTTGGTTTTCAAAGGTATTATTTGAGCACACGCCCATATGGATTGCAAACCAGTTACCTGGATGGATTGTTGCAGAGTATTTATTTTGACATGGGTGTTGTTCAACATGGTTTCAATGATTGGCTGTGCATCAAACTGTGAAATGGATTGTCCCTTGGGGGATGTGGAATCATTCATCAATAACTTTGGGGATCCATATGGGACCCCGATAGATCACTTTGGAGTTGCAGAGGGGACGAAGGGTGTGGAGAGTGTTGCTGCTCAGGAGATTGTGGCGTTGGCCAATATGCCTGAAAATGTTGAGTGGTTGAAGAGCATAAGGAGAAGAATCCATGAGCACCCGGAGCTTGCTTATGAGGAATTTGAGACAAGTAAGCTCATTAGGCAGGAGCTTGATCGAATGAATATTAGCTATAGGTACCCTGTGGCCAGAACAGGTGTGGTGGCTTCCATTGGTAATGGAAATCCTCCTTTCGTAGCTCTTCGAGCAGACATGGATGCTTTGCCAATTCAGGAGGCAGTTGAGTGGGAACACAAAAGCAAATCCCCAGGGAAAATGCACGCCTGTGGACATGATGCACATGTTACCATGCTTCTTGGTGGCGCAAAGATTTTGCAACAACGTCAGCATTTGTTACAGGGAACTGTCGTATTACTCTTCCAGCCTGCAGAGGAATCAGGCGTAGGATCAAAAAGAATGATAGAAGAGGGAGCACTGGAAAATGTGGAAGGCATATTCGCTATGCATGTTTCAAGCGATTATCCTACATCTGTGATTGGTTCGAAACCTGGGCCCTTACTCGCTGGCTGTGGGTTCTTCAAGGCAGTAATAACTGGGAAAGGTGGGCATGCAGCAATCCCACAACATTCAATTGATCCTATATTGGCAGGTTCTGCTTCTGTCGTCAGTTTACAACATCTCGTTTCACGTGAAGCCAATCCCTTGGATTCTCAGGTAGTATCTGTTGCCGCATTCAATGGAGGTGGTGCACTCAATGTCATTCCAGACTCAGTTACTATTGGTGGCACATTTCGGGCTTTCTCAAATGACAGCTTTTACAAACTCAGGCAGAGAATAGAAGAGGTTATTTTAGGACAAGCTGCTGTCCATAGGTGCACTGCAGTTGTAGATTTCTTTGAAAAAGAGGATCAGTTTTATCCTCCAACTTTCAATGACAGGGACATGCACAAACATGTACACAGAGTTGCGGCTGATGTAGTGGGTCTCCATAATTTTAAGATAGTGCCTCCCATGATGGGTGCAGAGGACTTTGCCTTCTACACAGAGGTTACTCCTGCTGCCTTCTTTTATATTGGAATGAGGAACGAGGCCATTGGGTCAATTCATTCAGGACATTCTCCTTACTTTATGATTGATGAAAATATTCTCCCTACTGGTGCTGCAATGCATGCTGCAATAGCTGAAAGATTCCTTAATGAACATAAATCCAGGACCACAAAACTCTGAGAACCTTGCAGTACTATCACGTTTCCTTTAATTTCGTACATTTTCTGCTCTTAGGAAAGGCAGATAACCTTCAGGATGCATTCAACTATAGCAACCAATGTACAGTTCCTTCTTTCATGTGTCATAGGCTGTCTACAAGATCACTCAGAAGTGATCTGTAAATCGAAATTGATATAGATGAATTTCTTCCTCCCAACAGTATGATAGAAGGCCTACGTGAAAGGTTCCTTACACAAGAGGGAGTAAATAACTCGATGCTTTACCGGAGGGGACAGATAACTGAATGTCTTAGTGAAAAATTAAATGGCAATATGTAATTGTTTCATTGTTTTTACTTCAGGGTCAATTTTTGGTAATACAAGATAGCAAGTTACTATGTTATGTTTTACAACAATAGGGATCTTTTTCTCCGATCTATTTGTTAAAGTCAGCCTCACTTTTTGCAGATAAATAATTCTCAAATGTTATTTTACAATTACTAAAGTGAACATCAACTTTATTCTTTCTTCTGAG

Ace file of the UniGene sp_v1.1_unigene839

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ILL9; iaa-amino acid hydrolase 9	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	iaa-amino acid hydrolase ilr1	-	-	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of systemic acquired resistance	GO:0010112	Biological Process	0.0	81%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	0.0	81%

Source	InterPros	Term	Type	Identity
Blast2go	Peptidase M20	IPR002933	-	81%
Blast2go	Peptidase M20, dimerisation	IPR011650	-	81%
Blast2go	Amidohydrolase	IPR017439	-	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVQ4

Fln msg:

Fln protein: MDCKPVTWMDCCRVFILTWVLFNMVSMIGCASNCEMDCPLGDVESFINNFGDPYGTPIDHFGVAEGTKGVESVAAQEIVALANMPENVEWLKSIRRRIHEHPELAYEEFETSKLIRQELDRMNISYRYPVARTGVVASIGNGNPPFVALRADMDALPIQEAVEWEHKSKSPGKMHACGHDAHVTMLLGGAKILQQRQHLLQGTVVLLFQPAEESGVGSKRMIEEGALENVEGIFAMHVSSDYPTSVIGSKPGPLLAGCGFFKAVITGKGGHAAIPQHSIDPILAGSASVVSLQHLVSREANPLDSQVVSVAAFNGGGALNVIPDSVTIGGTFRAFSNDSFYKLRQRIEEVILGQAAVHRCTAVVDFFEKEDQFYPPTFNDRDMHKHVHRVAADVVGLHNFKIVPPMMGAEDFAFYTEVTPAAFFYIGMRNEAIGSIHSGHSPYFMIDENILPTGAAMHAAIAERFLNEHKSRTTKL*

Protein Length: 478

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTAGGAGTGGGTTATTGGGTGTTTTAAGTTTCTGCCCAGCTGCTACCACGGGCCACTTCGTAGGCCTTGATTTTTTTTTGTGTATTGGAGCACAGGTGGAGTGTGGTCTTACATGAGTGAAGGGTTGGTTTTCAAAGGTATTATTTGAGCACACGCCCAT_-_ATGGATTGCAAACCAGTTACCTGGATGGATTGTTGCAGAGTATTTATTTTGACATGGGTGTTGTTCAACATGGTTTCAATGATTGGCTGTGCATCAAACTGTGAAATGGATTGTCCCTTGGGGGATGTGGAATCATTCATCAATAACTTTGGGGATCCATATGGGACCCCGATAGATCACTTTGGAGTTGCAGAGGGGACGAAGGGTGTGGAGAGTGTTGCTGCTCAGGAGATTGTGGCGTTGGCCAATATGCCTGAAAATGTTGAGTGGTTGAAGAGCATAAGGAGAAGAATCCATGAGCACCCGGAGCTTGCTTATGAGGAATTTGAGACAAGTAAGCTCATTAGGCAGGAGCTTGATCGAATGAATATTAGCTATAGGTACCCTGTGGCCAGAACAGGTGTGGTGGCTTCCATTGGTAATGGAAATCCTCCTTTCGTAGCTCTTCGAGCAGACATGGATGCTTTGCCAATTCAGGAGGCAGTTGAGTGGGAACACAAAAGCAAATCCCCAGGGAAAATGCACGCCTGTGGACATGATGCACATGTTACCATGCTTCTTGGTGGCGCAAAGATTTTGCAACAACGTCAGCATTTGTTACAGGGAACTGTCGTATTACTCTTCCAGCCTGCAGAGGAATCAGGCGTAGGATCAAAAAGAATGATAGAAGAGGGAGCACTGGAAAATGTGGAAGGCATATTCGCTATGCATGTTTCAAGCGATTATCCTACATCTGTGATTGGTTCGAAACCTGGGCCCTTACTCGCTGGCTGTGGGTTCTTCAAGGCAGTAATAACTGGGAAAGGTGGGCATGCAGCAATCCCACAACATTCAATTGATCCTATATTGGCAGGTTCTGCTTCTGTCGTCAGTTTACAACATCTCGTTTCACGTGAAGCCAATCCCTTGGATTCTCAGGTAGTATCTGTTGCCGCATTCAATGGAGGTGGTGCACTCAATGTCATTCCAGACTCAGTTACTATTGGTGGCACATTTCGGGCTTTCTCAAATGACAGCTTTTACAAACTCAGGCAGAGAATAGAAGAGGTTATTTTAGGACAAGCTGCTGTCCATAGGTGCACTGCAGTTGTAGATTTCTTTGAAAAAGAGGATCAGTTTTATCCTCCAACTTTCAATGACAGGGACATGCACAAACATGTACACAGAGTTGCGGCTGATGTAGTGGGTCTCCATAATTTTAAGATAGTGCCTCCCATGATGGGTGCAGAGGACTTTGCCTTCTACACAGAGGTTACTCCTGCTGCCTTCTTTTATATTGGAATGAGGAACGAGGCCATTGGGTCAATTCATTCAGGACATTCTCCTTACTTTATGATTGATGAAAATATTCTCCCTACTGGTGCTGCAATGCATGCTGCAATAGCTGAAAGATTCCTTAATGAACATAAATCCAGGACCACAAAACTCTGA___GAACCTTGCAGTACTATCACGTTTCCTTTAATTTCGTACATTTTCTGCTCTTAGGAAAGGCAGATAACCTTCAGGATGCATTCAACTATAGCAACCAATGTACAGTTCCTTCTTTCATGTGTCATAGGCTGTCTACAAGATCACTCAGAAGTGATCTGTAAATCGAAATTGATATAGATGAATTTCTTCCTCCCAACAGTATGATAGAAGGCCTACGTGAAAGGTTCCTTACACAAGAGGGAGTAAATAACTCGATGCTTTACCGGAGGGGACAGATAACTGAATGTCTTAGTGAAAAATTAAATGGCAATATGTAATTGTTTCATTGTTTTTACTTCAGGGTCAATTTTTGGTAATACAAGATAGCAAGTTACTATGTTATGTTTTACAACAATAGGGATCTTTTTCTCCGATCTATTTGTTAAAGTCAGCCTCACTTTTTGCAGATAAATAATTCTCAAATGTTATTTTACAATTACTAAAGTGAACATCAACTTTATTCTTTCTTCTGAG

Fln Alignment:

sp_v1.1_unigene839___MDCKPVTWMDCCRVFILTWVLFNMVSMIGCASNCEMDCPLGDVESFINNFGDPYGTPIDHFGVAEGTKGVESVAAQEIVALANMPENVEWLKSIRRRIHEHPELAYEEFETSKLIRQELDRMNISYRYPVARTGVVASIGNGNPPFVALRADMDALPIQEAVEWEHKSKSPGKMHACGHDAHVTMLLGGAKILQQRQHLLQGTVVLLFQPAEESGVGSKRMIEEGALENVEGIFAMHVSSDYPTSVIGSKPGPLLAGCGFFKAVITGKGGHAAIPQHSIDPILAGSASVVSLQHLVSREANPLDSQVVSVAAFNGGGALNVIPDSVTIGGTFRAFSNDSFYKLRQRIEEVILGQAAVHRCTAVVDFFEKEDQFYPPTFNDRDMHKHVHRVAADVVGLHNFKIVPPMMGAEDFAFYTEVTPAAFFYIGMRNEAIGSIHSGHSPYFMIDENILPTGAAMHAAIAERFLNEHKSRTTKL
A9NVQ4_____________MDWRAVTWMDCCRAFILIWVLFNMISMIVYASNCEMDCPLGDVESLVNNFEDQYGIPIDHFGVAEGTRGVGSVAAQEIVEVANLPENVEWLKRIRRRIHEHPELAYEEFETSKLIRHELDQMNVSYRYPVARTGVVASIGNGNPPFVALRADMDALPIQEAVEWEHKSKSPGKMHACGHDAHVTMLLGGAKILQQRQHLLQGTVILLFQPAEESGAGSKRMIAEGALENVEGIFAMHVSSDYPTSVIGSKPGPLLAGCGFFKAVITGKGGHAAIPQHSIDPILAGSASVVSLQHLVSREANPLDSQVVSVAAFNGGGALNVIPDSVTIGGTFRAFSNESFYRLRQRIEEVILGQAAVHRCTAVVDFFEKEDQFYPPTFNDKDMHKHVHRVAADVVGVHNFKIVPPMMGAEDFVFYTEVTPAAFFYIGMRNEAIGSTRSGHSPYFMIDENVLPTGAAMHAAIAERFLNEHKFRTKKL

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
855	88		11		0.923564
975	58		41		1.0
985			10	90	0.90298
1053		11		88	0.923564
1240			11	88	0.923564
1241			11	88	0.923564
1242			11	66	0.999999
1828	12		87		0.992554
1993		12		87	0.992554
2071	25			75	0.996473
2074	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain