SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene838

Length: 2109 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene838
CGTCGTGACCTTGGCTGTCACTCAGTATTTTTATAAACCAGTAGTAGTTCATCCAGTACACCTGCCCTGCACAGTACGTCTGCTTCTCCAAGGTCATATCTTTCAACGTTTTCTTCTCAGATCCAATCCGTCGTGACCTTGGCTGTCAGTGACCTTTTCTGTTTCCCCATTTCGGTTTTCGTAATCGTGAGCTCATTTTCATCGTCTCCCAAGCCATTTCACATGTACCCAAATGCTCATTTCCACATTTCAGAAACACCCATCTCCTCGTTTGTATATATTATCTGAGTCCGGTAACTGATTTTCCTACTGGTTCCTTATTAGGCCCATGACTTTGCCATATCTCTAAGTCAACCAAGATCTGATTTTGTTAAAACCCATCAGCTATATCATTCTTCCATGAAACCTAAGGGCTTATGTAGGCAACATTCAGTACACTGTACGTGCTACTGAGAATGAGGGTGAACCTCTTTCAATTGCAGGAGGATTGATCAACGGCCGGGTTGAATAGTTCGTGCGTGAAATGTTATGTCAGCACAAATGCACAGGCGTGTGCGACCTGTTCAGGTTGAAACCTCAGCATGTTACTGTGTAGCCGATGTGGGTCTAACTGTGATAGATGCTAAGAAATATGTACCTGGTACCAGACATTGTGGTCAACCAGAAATCAAAGCAACAATTCATTCTTCAAAGAGAAAATCTCATAAAAGTGAGAAAGGACGGGAACCTATTCCTTTGATACCTGGTCTTCCAGATGACCTTGCTATTGCTTGCTTAATTCGGGTTCCACGTGTCTTCCATCGGAAACTCAGGCTCGTATGTAAAAGGTGGTACCGTCTTTTGGCTGGAAATTTCTTCTATTCTCTAAGAAAAAGCCTTGGCATAGCAGAAGAGTGGATCTATGTATTCAAACAGGACCGTGATGGTCGCATTTCATGGCATGCATTTGATCCTAGGTACCAATTATGGCAGCCTCTGCCCCCTGTGCCGGCTGAATACTGCGAGGCACTTGGTTTTGGATGTGCTGTCCTCAGTGGATGCCATCTCTATTTGTTTGGGGGCAAAAGTCCATTAAAAGGATCTATGAGAAGGGTAGTCTACTACAGTGCACGGACAAATAAATGGCATCGAGCACCAGACATGCTCAGGAGGCGTCATTTCTTTGGGGCCTGTGTTTTTAATAATTGTTTGTATGTTGCAGGGGGAGAATGTGATGGTAGTTTTCATTCCCTCAAATCAGCAGAGGTGTACGACCCAAATAGAAGTAAATGGTCTTTCATATCCGACATGAGCACCTCTATTGTTCCTTTTTTTGGGGTGGTATATGGAGACAAATGGTTTCTCAAAGGCCTAGGTTCTCACAGGCAAGTTATATGTGAGATGTATGTGCCATCATTAAATCAGTGGTCTACTGTAGTAGGTGGCATAGTCGATGGATGGCAGACGCCAAGTGGCACATTAAATGGAAAACTTTATGCCCTTGACTGTAAGGATGGTTGCAGAATGCGAGTGTATGATAATGTCAATGACTCGTGGGACAGATTGATAGACAGCAAGCTTCATCTTGGCAATTCTCATGCGCTTGAGGCTGCAGCATTGCTTCCTCTTGGGGGTAAACTTTGTATTGTTCGAAATAACATGAGCATATCTGTTGTGGATGTGGCAAATCTTGATTGTAATGCTAAGAAAGGTCAATTGTGGGAGACCCTTTCCGGCAAAGGTCAGTTCAAAACTTTTGTCACAAACCTATGGTCAAATATTGCTGGTAAAAATGGGTCAAAGAGCCAAATATTACATTGCCAGGTACTTCAGGCATAGCTCTCATTGTCTTTGATTACTTGATTGTATACACAATTGTTTTGAAAATCTAGCCCATCATGTTCATGCTCATCAGGCTTGAAATGAAATGGCTTCCTTGCACAAATTTGAGAAGTATCGAGGTTCCATATGTAATAGGATGACCAATGTTATAAAATAATCCTTTTGAAAGGAATGTGCGCTTTTCCATGTGAGGGGGTTCAAGCATATCTCAGCTTTTTGGATAAATTTATATATATATATATATATGGAGGATTGTTCGAAAATCTAGGCGTCACTGGCAGGCCAACT

Ace file of the UniGene sp_v1.1_unigene838

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein AFR, putative n=1 Tax=Ricinus communis RepID=B9SEQ0_RICCO	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	26%
Blast2go	protein	-	-	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKU6

Fln msg: your sequence is shorter than subject: 430 - 469

Fln protein: MSAQMHRRVRPVQVETSACYCVADVGLTVIDAKKYVPGTRHCGQPEIKATIHSSKRKSHKSEKGREPIPLIPGLPDDLAIACLIRVPRVFHRKLRLVCKRWYRLLAGNFFYSLRKSLGIAEEWIYVFKQDRDGRISWHAFDPRYQLWQPLPPVPAEYCEALGFGCAVLSGCHLYLFGGKSPLKGSMRRVVYYSARTNKWHRAPDMLRRRHFFGACVFNNCLYVAGGECDGSFHSLKSAEVYDPNRSKWSFISDMSTSIVPFFGVVYGDKWFLKGLGSHRQVICEMYVPSLNQWSTVVGGIVDGWQTPSGTLNGKLYALDCKDGCRMRVYDNVNDSWDRLIDSKLHLGNSHALEAAALLPLGGKLCIVRNNMSISVVDVANLDCNAKKGQLWETLSGKGQFKTFVTNLWSNIAGKNGSKSQILHCQVLQA*

Protein Length: 431

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTATTTTTATAAACCAGTAGTAGTTCATCCAGTACACCTGCCCTGCACAGTACGTCTGCTTCTCCAAGGTCATATCTTTCAACGTTTTCTTCTCAGATCCAATCCGTCGTGACCTTGGCTGTCAGTGACCTTTTCTGTTTCCCCATTTCGGTTTTCGTAATCGTGAGCTCATTTTCATCGTCTCCCAAGCCATTTCACATGTACCCAAATGCTCATTTCCACATTTCAGAAACACCCATCTCCTCGTTTGTATATATTATCTGAGTCCGGTAACTGATTTTCCTACTGGTTCCTTATTAGGCCCATGACTTTGCCATATCTCTAAGTCAACCAAGATCTGATTTTGTTAAAACCCATCAGCTATATCATTCTTCCATGAAACCTAAGGGCTTATGTAGGCAACATTCAGTACACTGTACGTGCTACTGAGAATGAGGGTGAACCTCTTTCAATTGCAGGAGGATTGATCAACGGCCGGGTTGAATAGTTCGTGCGTGAAATGTT_-_ATGTCAGCACAAATGCACAGGCGTGTGCGACCTGTTCAGGTTGAAACCTCAGCATGTTACTGTGTAGCCGATGTGGGTCTAACTGTGATAGATGCTAAGAAATATGTACCTGGTACCAGACATTGTGGTCAACCAGAAATCAAAGCAACAATTCATTCTTCAAAGAGAAAATCTCATAAAAGTGAGAAAGGACGGGAACCTATTCCTTTGATACCTGGTCTTCCAGATGACCTTGCTATTGCTTGCTTAATTCGGGTTCCACGTGTCTTCCATCGGAAACTCAGGCTCGTATGTAAAAGGTGGTACCGTCTTTTGGCTGGAAATTTCTTCTATTCTCTAAGAAAAAGCCTTGGCATAGCAGAAGAGTGGATCTATGTATTCAAACAGGACCGTGATGGTCGCATTTCATGGCATGCATTTGATCCTAGGTACCAATTATGGCAGCCTCTGCCCCCTGTGCCGGCTGAATACTGCGAGGCACTTGGTTTTGGATGTGCTGTCCTCAGTGGATGCCATCTCTATTTGTTTGGGGGCAAAAGTCCATTAAAAGGATCTATGAGAAGGGTAGTCTACTACAGTGCACGGACAAATAAATGGCATCGAGCACCAGACATGCTCAGGAGGCGTCATTTCTTTGGGGCCTGTGTTTTTAATAATTGTTTGTATGTTGCAGGGGGAGAATGTGATGGTAGTTTTCATTCCCTCAAATCAGCAGAGGTGTACGACCCAAATAGAAGTAAATGGTCTTTCATATCCGACATGAGCACCTCTATTGTTCCTTTTTTTGGGGTGGTATATGGAGACAAATGGTTTCTCAAAGGCCTAGGTTCTCACAGGCAAGTTATATGTGAGATGTATGTGCCATCATTAAATCAGTGGTCTACTGTAGTAGGTGGCATAGTCGATGGATGGCAGACGCCAAGTGGCACATTAAATGGAAAACTTTATGCCCTTGACTGTAAGGATGGTTGCAGAATGCGAGTGTATGATAATGTCAATGACTCGTGGGACAGATTGATAGACAGCAAGCTTCATCTTGGCAATTCTCATGCGCTTGAGGCTGCAGCATTGCTTCCTCTTGGGGGTAAACTTTGTATTGTTCGAAATAACATGAGCATATCTGTTGTGGATGTGGCAAATCTTGATTGTAATGCTAAGAAAGGTCAATTGTGGGAGACCCTTTCCGGCAAAGGTCAGTTCAAAACTTTTGTCACAAACCTATGGTCAAATATTGCTGGTAAAAATGGGTCAAAGAGCCAAATATTACATTGCCAGGTACTTCAGGCATAG___CTCTCATTGTCTTTGATTACTTGATTGTATACACAATTGTTTTGAAAATCTAGCCCATCATGTTCATGCTCATCAGGCTTGAAATGAAATGGCTTCCTTGCACAAATTTGAGAAGTATCGAGGTTCCATATGTAATAGGATGACCAATGTTATAAAATAATCCTTTTGAAAGGAATGTGCGCTTTTCCATGTGAGGGGGTTCAAGCATATCTCAGCTTTTTGGATAAATTTATATATATATATATATATGGAGGATTGTTCGAAAATCTAGGCGTCACTGGCAGGCCAACT

Fln Alignment:

sp_v1.1_unigene838___AIACLIRVPRVFHRKLRLVCKRWYRLLAGNFFYSLRKSLGIAEEWIYVFKQDRDGRISWHAFDPRYQLWQPLPPVPA-----EYCEALGF---------------------------------GCAV--LSGCHLYLFGGKSPLKGSMRRVVYYSARTNKWHRAPDMLRRRHFFGACVFNNCLYVAGG--ECDGSFHSLKSAEVYDPNRSKWSFISDM---STSIVPFFGVVYGDKWFLKGLGSHRQVIC----------------EMYVPSLNQWSTVVGGIVDGWQT-PSGT-----LNGKLYALD---CKDGCRMRVYDNVNDSWDRLIDSKLHLGNSHXXXXXXXXXXGGKLCIVRNNMSISVVDVANLDCNAKKGQ-LWETLSGKGQFKTFVTNL----WSNIAGKNGSKSQILHCQV
B8LKU6_____________SIRILARVPLGCYSKLKLVCKTWNHVLRDSEIFELRKEISFSEEWLYILMKDEEEKLIWNALDPLSGKWQSLPPMPAIIYEEEFNKATGWSLWNAMGTSGYRLTGIVRGWFGRKDSLDRTPFCGCAVGAINGC-LYVLGGFAK-ACALKCVWRYDPRINTWTEVAPMTTARAYCKTAVLNNKLYVVGGVNRGRGGLTPLQSAEAYDPVTNTWTQISNMPFARAQVLPTAFLADMLKPIATGMTAFRGKLCVPQSLYSWPFFVDVGGETYDPATDSWMEMPNGMGDGWPARQAGTKLSVVVDGNLYALDPSSSLDSGKIKMYDPQEDTWKVILRKVPVIDFSDSESPYLLAGFLGKLHVITKDIG---DNIAVLQADTSEGAVLSSSSSSPSDPSTSISDSEADGWKSIGSRHFGFVELVSCQV

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
819		80		20	0.995493
826	80	20			0.995493
827	80		20		0.995493
828	80	20			0.995493
838	20	80			0.995493
840			20	80	0.995493
842		20		80	0.995493
882		16		83	0.994512
886	85		14		0.993533
888	85	14			0.993533
891	85			14	0.993533
895		14	85		0.993533
896	85	14			0.993533
897			85	14	0.993533
901	85	14			0.993533
903		85	14		0.993533
907		14	85		0.993533
908	14			85	0.993533
1080	71		14		0.984337
1309		83		16	0.994512
1311		16		66	0.988813
1615		27	72		1.0
2009	25	75			0.996473
2084		66		33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
2049	2067	TA TA TA TA TA TA TA TA TA T	19

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain