SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene833

Length: 2790 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene833
CGTCGTGACCTTGGCTGTCACTCAATTAATATCTGGACTCGAATACCAATTGCTCACCCAGCGATTCGATTCGATACTGGCAGTCATGTGTCCTCCAAGCAGAAACAGGGGCAGCCACCATCAGAAATAAAATGGTGGACGGAGGAACCGTGGAAGGTGAAGGAGGCCTTCAGCGTATTGGACAAAGACGGCGACGGAAAAATCAGTTTGTTGGATCTCCAGCATTTCTTCAGCTTGGGGAAGGGGCTGAGCAGAGAGGAAATGGAGGCCATGATATCTGTTGCCGACGCCGACAACAGCGGCTCTGTGGATTTTGAGGAGTTTCGCCGGATCTTGCAGCTGAATATGCCGGAAATTCAAGAAATCAAAGACAGCAGACCGAATTCTGATGATGACGGTGAGATGTGGGCGTTGAAGGAGGCGTTTAATGTGATGGACAGAGACGGAGACGGGATTGTGAGCGCAGAGGATCTCAAGGCGTTCCTCTCCTCCTCTATCGCTACAGGCGGCGGTAGCGGTGAAAGCTGCAATGTAATAATGAGCGACGAGGATTTGGCGGAGATGATAGAGGCGACAGGCGGGTCCGCCAAATGTGGCGTTTGCTACGAAGATTTTGTCCGAATGATGATAACGATGATGAATGGCTTCTCTTAATTTGGCTGTTTTCGTTAGGCGTTGTCTACTGAAGTCTCAATTTTCCGATGGAAAGTAATTATTTATGCAGTTGTCTATAACGTGATTTTTTAAAGCTTTTCGGCGGGTTTTTCCCGTCAAAATCTCGCAGCAATTTATTGGAATGGCAAGTTTGATAGTTAGTTTGTGCACAATCAAAGCGTCCCAGGGGTTTTTCAGGGTGCTGAATCCAAATATGCAGTTAAAAAACCATTTTAACTGCAACAAATCAAGATTTAACCTCAATTTCTTCCGCCGGATTCCGTCACCGGAATCTCCAAAAAATCGCATTATAGACAACTCCATATGCTAACATTACAGATAAAATTAACAAGATCCAACCATCCGCCAAAATGTAGAGACCAAAAATACAATTCGCAATATTTTAGTATATATTTCAGTTGTGCTGTAGGGATCTCCCCTCAATACATAAAGAACCAGCCCAGAGATGCTGCATAAAGCTACACTCGCTTAACAAGTTGATATTCCAGATTCTCCTGTAATGTACACTTTTGAGAAAAGCACGGCCTTTCTCTAAAATCTATATACAGCTTCTAGCCATCACAACTTGACGACATGGCTCTCTAAAACTGATAAACTGAGATCTTCTCTTGATTGTGATCGTCGACTCTGCAACCGCATTTGACCTCTGTGAGGTGTCCACAAGGGTCCAGTATCAGTTTGTATTTGCCCCAAATTGCTTGGAAAACACAATCCAACTGACACAGTTGACTGATGCTTGAGAGAATCAGCATGTTGCACACTTCCACCCGCAAGGCTTTGCGCAAGTCCAAATGGTTGCTGACACCCTGAATTTGAAGGGCTAAGTGGTATCTTTGCTCTTCCATCCCCAGAACGACTTGGAGAAATTCCATTACCGATGGAATTACGTCCTTGGAAGCGAAAAGGCGATGGAATTTTGATAATGGGGCTGCCACTTGAAGTGTGTTGTCCAAAAAGAGGCAAATGCGGTTTACGCCATAGCCTCAAGATCCCTTTACGAAGGCACGATAAAGCAAATATTATTATTAAAAAGAACATAAAGAGCACTGCCGTAAGGGTAGTTGGATCTAAATCAAAATGTCTTTTCTCAAAAATGTGAAAATTAGCCTGGCCTCCCACCGGCGGCCGTTTTAACAAAAATGTTCCAGCTTCAAGCAATGCAGCACCTAAAGTCCAAGTAATGCTACCAGACCCCACAACTACTTGTTTCTCCTTCAATTGCAAACCATCTCTCAGGAGTGATACTATATATGGAGCACGAAAACAATATTGTTCTATAAAAGGCTGTGGAACAACACTCCGCTCAGCATCTTGCCAAGTTTTAGTGCAGAACTCCCGACCCTTCTCTAGAACATCATTAAATGAAGCGGCAGCAGAAAGATTAAAAAACTTGAACACAACAAAGAAACCTGACATAGCATAGAATTGCCCTTGAGGTTGTTGCTGCTGATCACTGATAGCACAAGGATGTTGTTTGCAGTCTGTCCCTGTCCCCGAATGTGACCATTCAGAGGCATTTATGGTTGATTTCGCCAGAGCTTCACATTCTTCCCAGTTGGGCTCACCAATCAACTCAAGCCCTACTCGAGATTCTTCTTTACTTATGTCTCTTCCACCAACCAGAGGACTTCCATTCTGGAGTAAGAAAGAACACTGAGAACATGAGTATTGCTGTCTATAACCAGCATGTATGCAAGGATGATTGAGATGCAACTGACCACCAGAGAATTTCCCACTGTCAGTTTTTAAATTTTTTCTGAGTAGAAGTACAACGGACTTTTCAAAGGCATCATTTAGGCCATAACCTGTAAGGGAATATGCATTTAGATGGCGTTCCATTGTTCCAATGGTCAGATTCAAGCCATATTTAGATTCAAATGTCACCTGTAATGAGGAACCCCCTAAGTCAAGTGCACCAAACGTCTCCAGAATCGGCATATTCTGCAATCTACCCATCATATAATTAAGAGCTACCCATCCATAGTAAGCCTCTTCTACCCCAGTAATTATCCTAACCCAGTTTCTTCGACACATAAATGGAGATTCTTCTAGAATTGACCATGCCTTGTCCAGGATCCATTCTGAATCTGAACTTGGCATCCTGCGAAGCCCTGC

Ace file of the UniGene sp_v1.1_unigene833 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	adenosine diphosphatase, putative (EC:3.6.1.5)	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	73%
Blast2go	protein	-	-	65%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Nucleoside phosphatase GDA1/CD39	IPR000407	-	0.0	65%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZM5

Fln msg: W2: There is no M at the beginning,

Fln protein: RRDLGCHSINIWTRIPIAHPAIRFDTGSHVSSKQKQGQPPSEIKWWTEEPWKVKEAFSVLDKDGDGKISLLDLQHFFSLGKGLSREEMEAMISVADADNSGSVDFEEFRRILQLNMPEIQEIKDSRPNSDDDGEMWALKEAFNVMDRDGDGIVSAEDLKAFLSSSIATGGGSGESCNVIMSDEDLAEMIEATGGSAKCGVCYEDFVRMMITMMNGFS*

Protein Length: 219

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTAATATCTGGACTCGAATACCAATTGCTCACCCAGCGATTCGATTCGATACTGGCAGTCATGTGTCCTCCAAGCAGAAACAGGGGCAGCCACCATCAGAAATAAAATGGTGGACGGAGGAACCGTGGAAGGTGAAGGAGGCCTTCAGCGTATTGGACAAAGACGGCGACGGAAAAATCAGTTTGTTGGATCTCCAGCATTTCTTCAGCTTGGGGAAGGGGCTGAGCAGAGAGGAAATGGAGGCCATGATATCTGTTGCCGACGCCGACAACAGCGGCTCTGTGGATTTTGAGGAGTTTCGCCGGATCTTGCAGCTGAATATGCCGGAAATTCAAGAAATCAAAGACAGCAGACCGAATTCTGATGATGACGGTGAGATGTGGGCGTTGAAGGAGGCGTTTAATGTGATGGACAGAGACGGAGACGGGATTGTGAGCGCAGAGGATCTCAAGGCGTTCCTCTCCTCCTCTATCGCTACAGGCGGCGGTAGCGGTGAAAGCTGCAATGTAATAATGAGCGACGAGGATTTGGCGGAGATGATAGAGGCGACAGGCGGGTCCGCCAAATGTGGCGTTTGCTACGAAGATTTTGTCCGAATGATGATAACGATGATGAATGGCTTCTCTTAA___TTTGGCTGTTTTCGTTAGGCGTTGTCTACTGAAGTCTCAATTTTCCGATGGAAAGTAATTATTTATGCAGTTGTCTATAACGTGATTTTTTAAAGCTTTTCGGCGGGTTTTTCCCGTCAAAATCTCGCAGCAATTTATTGGAATGGCAAGTTTGATAGTTAGTTTGTGCACAATCAAAGCGTCCCAGGGGTTTTTCAGGGTGCTGAATCCAAATATGCAGTTAAAAAACCATTTTAACTGCAACAAATCAAGATTTAACCTCAATTTCTTCCGCCGGATTCCGTCACCGGAATCTCCAAAAAATCGCATTATAGACAACTCCATATGCTAACATTACAGATAAAATTAACAAGATCCAACCATCCGCCAAAATGTAGAGACCAAAAATACAATTCGCAATATTTTAGTATATATTTCAGTTGTGCTGTAGGGATCTCCCCTCAATACATAAAGAACCAGCCCAGAGATGCTGCATAAAGCTACACTCGCTTAACAAGTTGATATTCCAGATTCTCCTGTAATGTACACTTTTGAGAAAAGCACGGCCTTTCTCTAAAATCTATATACAGCTTCTAGCCATCACAACTTGACGACATGGCTCTCTAAAACTGATAAACTGAGATCTTCTCTTGATTGTGATCGTCGACTCTGCAACCGCATTTGACCTCTGTGAGGTGTCCACAAGGGTCCAGTATCAGTTTGTATTTGCCCCAAATTGCTTGGAAAACACAATCCAACTGACACAGTTGACTGATGCTTGAGAGAATCAGCATGTTGCACACTTCCACCCGCAAGGCTTTGCGCAAGTCCAAATGGTTGCTGACACCCTGAATTTGAAGGGCTAAGTGGTATCTTTGCTCTTCCATCCCCAGAACGACTTGGAGAAATTCCATTACCGATGGAATTACGTCCTTGGAAGCGAAAAGGCGATGGAATTTTGATAATGGGGCTGCCACTTGAAGTGTGTTGTCCAAAAAGAGGCAAATGCGGTTTACGCCATAGCCTCAAGATCCCTTTACGAAGGCACGATAAAGCAAATATTATTATTAAAAAGAACATAAAGAGCACTGCCGTAAGGGTAGTTGGATCTAAATCAAAATGTCTTTTCTCAAAAATGTGAAAATTAGCCTGGCCTCCCACCGGCGGCCGTTTTAACAAAAATGTTCCAGCTTCAAGCAATGCAGCACCTAAAGTCCAAGTAATGCTACCAGACCCCACAACTACTTGTTTCTCCTTCAATTGCAAACCATCTCTCAGGAGTGATACTATATATGGAGCACGAAAACAATATTGTTCTATAAAAGGCTGTGGAACAACACTCCGCTCAGCATCTTGCCAAGTTTTAGTGCAGAACTCCCGACCCTTCTCTAGAACATCATTAAATGAAGCGGCAGCAGAAAGATTAAAAAACTTGAACACAACAAAGAAACCTGACATAGCATAGAATTGCCCTTGAGGTTGTTGCTGCTGATCACTGATAGCACAAGGATGTTGTTTGCAGTCTGTCCCTGTCCCCGAATGTGACCATTCAGAGGCATTTATGGTTGATTTCGCCAGAGCTTCACATTCTTCCCAGTTGGGCTCACCAATCAACTCAAGCCCTACTCGAGATTCTTCTTTACTTATGTCTCTTCCACCAACCAGAGGACTTCCATTCTGGAGTAAGAAAGAACACTGAGAACATGAGTATTGCTGTCTATAACCAGCATGTATGCAAGGATGATTGAGATGCAACTGACCACCAGAGAATTTCCCACTGTCAGTTTTTAAATTTTTTCTGAGTAGAAGTACAACGGACTTTTCAAAGGCATCATTTAGGCCATAACCTGTAAGGGAATATGCATTTAGATGGCGTTCCATTGTTCCAATGGTCAGATTCAAGCCATATTTAGATTCAAATGTCACCTGTAATGAGGAACCCCCTAAGTCAAGTGCACCAAACGTCTCCAGAATCGGCATATTCTGCAATCTACCCATCATATAATTAAGAGCTACCCATCCATAGTAAGCCTCTTCTACCCCAGTAATTATCCTAACCCAGTTTCTTCGACACATAAATGGAGATTCTTCTAGAATTGACCATGCCTTGTCCAGGATCCATTCTGAATCTGAACTTGGCATCCTGCGAAGCCCTGC

Fln Alignment:

sp_v1.1_unigene833___PSEIKWWTEEPWKVKEAFSVLDKDGDGKISLLDLQHFFS-----LGKGLSREEMEAMISVADADNSGSVDFEEFRRILQLNMPEIQEIKDSRPNSDDDGEMWALKEAFNVMDRDGDGIVSAEDLKAFLSSSIATGGGSGESCNVIMSDEDLAEMIEATGGSAKCGVCYEDFVRMMITMMNGFS
A9NZM5_____________PSEIKSWTEEPWKVKEAFNLLDKDGDGKIGLSDLQDFFSSSRFNVGKGLSREEMESMISVADTDNSGSVDFEEFHRILRLIMPEIDETEKRRSNTDD-AQMWALKEAFNVIDTDGDGIVSAEDLKTFFSSITASASSSSEICNAMMSEEDLGDMIEAAGGSAKCGVCYEGFARLMMTMMNGFS

SNPs (tot: 103)

Position	A %	C %	G %	T %	Probability
117	33		66		1.0
606			33	66	0.997452
625	66		33		0.997452
681	25			75	0.996473
1043		14		85	0.993533
1061		85		14	0.993533
1124	80		20		0.995493
1153	87			12	0.992554
1184		20		80	0.999996
1277	90		10		0.90298
1298		87		12	0.992554
1302		12		87	0.992554
1356	89	10			0.999919
1364	88	11			0.999937
1366	88			11	0.999937
1367		11	11	77	0.999842
1376	11			88	0.999937
1551	87		12		0.992554
1593	14		85		0.993533
1597	33		66		1.0
1700	25		75		0.996473
1713		75		25	0.996473
1890		90		10	0.90298
1891		10		90	0.90298
1898		10	90		0.90298
1902	10	90			0.90298
1903	88		11		0.923564
1909	87			12	0.992554
1910	87			12	0.992554
1920	85	14			0.993533
1922		85		14	0.999981
1923			14	85	0.999981
1925		85		14	0.999981
1932	14		85		0.999981
1946		25	75		1.0
1947	90		10		0.90298
1952		75		25	1.0
1954		75		25	1.0
1957	12		87		0.992554
1976		57	42		1.0
1983	57		42		1.0
1996	14	71		14	0.984337
1997	28	42	28		1.0
2003	83	16			0.994512
2004	66			33	1.0
2010		20		80	0.995493
2011	20		80		0.995493
2016		50	50		1.0
2017	75		25		0.996473
2061	20	80			0.995493
2088	20	80			0.995493
2284	66		33		1.0
2319		83	16		0.994512
2385	66		33		0.997452
2386		66	33		0.997452
2393	83		16		0.999991
2394	16			83	0.999991
2396			16	83	0.999991
2416		87	12		0.992554
2417	12		87		0.992554
2421			12	87	0.992554
2422	12		87		0.992554
2424	12			87	0.992554
2428		12		87	0.992554
2429	12			87	0.992554
2430	12			87	0.992554
2432	87		12		0.992554
2434		12		87	0.992554
2435	12			87	0.992554
2438	12			87	0.992554
2439		12		87	0.992554
2490	87			12	0.992554
2491		87	12		0.992554
2494	87			12	0.992554
2498	12	75		12	0.975346
2501	12	12		75	0.975346
2502	12		87		0.992554
2503	12			75	0.975346
2504			12	87	0.992554
2506	12			87	0.992554
2508	12		75		0.975346
2509	12		87		0.992554
2511		12	87		0.992554
2512	25			75	1.0
2513	12	87			0.992554
2516		85		14	0.993533
2517	85	14			0.993533
2523		14		85	0.993533
2524	85		14		0.993533
2526		83	16		0.994512
2530	16		83		0.994512
2532	16	83			0.994512
2533			16	83	0.994512
2537	20			80	0.995493
2538			20	80	0.995493
2539			20	80	0.995493
2540		80		20	0.995493
2542	20			80	0.995493
2544			20	80	0.995493
2545	20	80			0.995493
2546		20		80	0.995493
2642	75	25			0.996473
2645	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain